Kazn (kazrin, periplakin interacting protein) - Rat Genome Database

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Gene: Kazn (kazrin, periplakin interacting protein) Rattus norvegicus
Analyze
Symbol: Kazn
Name: kazrin, periplakin interacting protein
RGD ID: 1359147
Description: Predicted to be involved in keratinization. Predicted to be located in several cellular components, including cornified envelope; desmosome; and nuclear speck. Orthologous to human KAZN (kazrin, periplakin interacting protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Kaz; kazrin; LOC313672; MGC105638; similar to CG11206-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85159,675,803 - 160,666,084 (-)NCBIGRCr8
mRatBN7.25154,392,793 - 155,381,567 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5154,392,793 - 154,779,074 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5157,111,339 - 157,463,462 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05158,884,642 - 159,236,752 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05158,873,755 - 159,230,993 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05160,637,235 - 161,730,513 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5160,639,578 - 160,742,479 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05164,348,122 - 164,739,996 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45161,041,203 - 161,399,651 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15161,051,390 - 161,409,839 (-)NCBI
Celera5152,777,835 - 153,127,761 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
amphotericin B  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
butanal  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlormequat chloride  (EXP)
clobetasol  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
ketamine  (EXP)
lipopolysaccharide  (ISO)
malathion  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
mitomycin C  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N,N-diethyl-m-toluamide  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
tetraphene  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
zearalenone  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cornified envelope  (IEA,ISO)
cytoskeleton  (IEA)
cytosol  (IEA,ISO)
desmosome  (IEA,ISO)
nuclear speck  (IEA,ISO)
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15337775   PMID:15632090  


Genomics

Comparative Map Data
Kazn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85159,675,803 - 160,666,084 (-)NCBIGRCr8
mRatBN7.25154,392,793 - 155,381,567 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5154,392,793 - 154,779,074 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5157,111,339 - 157,463,462 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05158,884,642 - 159,236,752 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05158,873,755 - 159,230,993 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05160,637,235 - 161,730,513 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5160,639,578 - 160,742,479 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05164,348,122 - 164,739,996 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45161,041,203 - 161,399,651 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15161,051,390 - 161,409,839 (-)NCBI
Celera5152,777,835 - 153,127,761 (-)NCBICelera
Cytogenetic Map5q36NCBI
KAZN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38113,892,824 - 15,118,043 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl113,892,792 - 15,118,043 (+)EnsemblGRCh38hg38GRCh38
GRCh37114,925,181 - 15,444,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36114,797,800 - 15,317,131 (+)NCBINCBI36Build 36hg18NCBI36
Celera113,408,144 - 13,927,446 (+)NCBICelera
Cytogenetic Map1p36.21NCBI
HuRef113,444,857 - 13,964,389 (+)NCBIHuRef
CHM1_1114,723,693 - 15,242,861 (+)NCBICHM1_1
T2T-CHM13v2.0113,334,833 - 14,562,121 (+)NCBIT2T-CHM13v2.0
Kazn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394141,829,701 - 142,801,231 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4141,829,701 - 142,205,056 (-)EnsemblGRCm39 Ensembl
GRCm384142,102,390 - 142,239,401 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4142,102,390 - 142,239,401 (-)EnsemblGRCm38mm10GRCm38
MGSCv374141,658,305 - 141,795,316 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364141,374,467 - 141,426,643 (-)NCBIMGSCv36mm8
Celera4143,919,796 - 144,298,560 (-)NCBICelera
Cytogenetic Map4D3- E1NCBI
cM Map475.46NCBI
Kazn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555272,963,713 - 3,970,331 (-)NCBIChiLan1.0ChiLan1.0
KAZN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21211,796,528 - 213,026,267 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11211,043,485 - 212,274,031 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0113,032,125 - 14,261,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1114,740,009 - 15,255,377 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl114,031,858 - 15,251,972 (+)Ensemblpanpan1.1panPan2
KAZN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1282,336,553 - 82,490,834 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,873,943 - 79,882,899 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,986,417 - 83,996,803 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,988,859 - 83,996,696 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1279,738,681 - 80,750,015 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0280,757,019 - 81,768,142 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,822,182 - 82,835,083 (-)NCBIUU_Cfam_GSD_1.0
Kazn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505836,159,375 - 37,040,368 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364742,561,729 - 2,865,137 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KAZN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl674,236,437 - 74,378,956 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1673,297,134 - 74,402,794 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2668,270,004 - 68,735,043 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KAZN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120117,154,382 - 118,374,021 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20117,154,375 - 117,237,882 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605420,868,158 - 21,394,442 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kazn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624764414,993 - 1,486,004 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kazn
6886 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:65
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000019447
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

Markers in Region
BE110084  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25154,704,721 - 154,704,875 (+)MAPPERmRatBN7.2
Rnor_6.05160,961,062 - 160,961,215NCBIRnor6.0
Rnor_5.05164,665,455 - 164,665,608UniSTSRnor5.0
RGSC_v3.45161,324,497 - 161,324,650UniSTSRGSC3.4
Celera5153,053,140 - 153,053,293UniSTS
RH 3.4 Map51057.6UniSTS
Cytogenetic Map5q36UniSTS
RH129688  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25154,427,348 - 154,427,529 (+)MAPPERmRatBN7.2
Rnor_6.05160,673,066 - 160,673,246NCBIRnor6.0
Rnor_5.05164,382,836 - 164,383,016UniSTSRnor5.0
RGSC_v3.45161,041,257 - 161,041,437UniSTSRGSC3.4
Celera5152,777,889 - 152,778,069UniSTS
RH 3.4 Map51057.6UniSTS
Cytogenetic Map5q36UniSTS
BE097302  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25154,718,913 - 154,719,098 (+)MAPPERmRatBN7.2
Rnor_6.05160,975,431 - 160,975,615NCBIRnor6.0
Rnor_5.05164,679,821 - 164,680,005UniSTSRnor5.0
RGSC_v3.45161,339,410 - 161,339,594UniSTSRGSC3.4
Celera5153,067,929 - 153,068,113UniSTS
RH 3.4 Map51058.2UniSTS
Cytogenetic Map5q36UniSTS
AU049336  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25154,631,118 - 154,631,281 (+)MAPPERmRatBN7.2
Rnor_6.05160,886,864 - 160,887,026NCBIRnor6.0
Rnor_5.05164,592,577 - 164,592,739UniSTSRnor5.0
RGSC_v3.45161,250,102 - 161,250,264UniSTSRGSC3.4
Celera5152,980,767 - 152,980,929UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 74 28 25 2
Low 3 43 55 39 19 39 8 11 7 16 9 8
Below cutoff 2 2 2

Sequence


RefSeq Acc Id: ENSRNOT00000019447   ⟹   ENSRNOP00000019447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5154,392,793 - 154,779,074 (-)Ensembl
Rnor_6.0 Ensembl5160,639,578 - 160,742,479 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108272   ⟹   ENSRNOP00000079377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5154,427,301 - 154,515,626 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118606   ⟹   ENSRNOP00000088366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5154,427,301 - 154,522,260 (-)Ensembl
RefSeq Acc Id: NM_001014070   ⟹   NP_001014092
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,710,298 - 160,061,881 (-)NCBI
mRatBN7.25154,427,292 - 154,778,913 (-)NCBI
Rnor_6.05160,673,012 - 161,035,539 (-)NCBI
Rnor_5.05164,348,122 - 164,739,996 (-)NCBI
RGSC_v3.45161,041,203 - 161,399,651 (-)RGD
Celera5152,777,835 - 153,127,761 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415945   ⟹   NP_001402874
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,675,803 - 160,061,881 (-)NCBI
mRatBN7.25154,392,794 - 154,778,913 (-)NCBI
RefSeq Acc Id: XM_006239310   ⟹   XP_006239372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,675,803 - 160,435,617 (-)NCBI
mRatBN7.25154,392,793 - 155,152,694 (-)NCBI
Rnor_6.05160,637,235 - 161,496,657 (-)NCBI
Rnor_5.05164,348,122 - 164,739,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239311   ⟹   XP_006239373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,675,803 - 159,805,239 (-)NCBI
mRatBN7.25154,392,793 - 154,522,252 (-)NCBI
Rnor_6.05160,637,235 - 160,769,524 (-)NCBI
Rnor_5.05164,348,122 - 164,739,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593423   ⟹   XP_017448912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,675,803 - 160,666,084 (-)NCBI
mRatBN7.25154,392,793 - 155,381,567 (-)NCBI
Rnor_6.05160,637,235 - 161,730,513 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110084   ⟹   XP_038966012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,675,803 - 159,786,817 (-)NCBI
mRatBN7.25154,392,793 - 154,503,742 (-)NCBI
RefSeq Acc Id: NP_001014092   ⟸   NM_001014070
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZNB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239372   ⟸   XM_006239310
- Peptide Label: isoform X2
- UniProtKB: A0A0H2UHL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239373   ⟸   XM_006239311
- Peptide Label: isoform X3
- UniProtKB: A0A0H2UHL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448912   ⟸   XM_017593423
- Peptide Label: isoform X1
- UniProtKB: A0A0H2UHL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000019447   ⟸   ENSRNOT00000019447
RefSeq Acc Id: XP_038966012   ⟸   XM_039110084
- Peptide Label: isoform X4
- UniProtKB: A0A0H2UHL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088366   ⟸   ENSRNOT00000118606
RefSeq Acc Id: ENSRNOP00000079377   ⟸   ENSRNOT00000108272
RefSeq Acc Id: NP_001402874   ⟸   NM_001415945
- Peptide Label: isoform 1
- UniProtKB: Q5FWS6 (UniProtKB/Swiss-Prot),   A0A0H2UHL8 (UniProtKB/TrEMBL)
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FWS6-F1-model_v2 AlphaFold Q5FWS6 1-780 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359147 AgrOrtholog
BioCyc Gene G2FUF-39323 BioCyc
Ensembl Genes ENSRNOG00000014322 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019447 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000019447.7 UniProtKB/Swiss-Prot
  ENSRNOT00000108272.1 UniProtKB/TrEMBL
  ENSRNOT00000118606.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.287.1490 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7320330 IMAGE-MGC_LOAD
InterPro Kazrin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kazrin_SAM_rpt_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kazrin_SAM_rpt_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kazrin_SAM_rpt_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:313672 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105638 IMAGE-MGC_LOAD
NCBI Gene 313672 ENTREZGENE
PANTHER KAZRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12776 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kazn PhenoGen
PROSITE SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014322 RatGTEx
SMART SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHL8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AAP0_RAT UniProtKB/TrEMBL
  A6ITY6_RAT UniProtKB/TrEMBL
  KAZRN_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-13 Kazn  kazrin, periplakin interacting protein  LOC313672  kazrin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-19 LOC313672  kazrin  LOC313672  similar to CG11206-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC313672  similar to CG11206-PA      Symbol and Name status set to provisional 70820 PROVISIONAL