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Gene: Kazn (kazrin, periplakin interacting protein) Rattus norvegicus

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Symbol:

Kazn

Name:

kazrin, periplakin interacting protein

RGD ID:

1359147

Description:

Predicted to be involved in keratinization. Predicted to be located in cornified envelope and desmosome. Orthologous to human KAZN (kazrin, periplakin interacting protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Kaz; kazrin; LOC313672; MGC105638; similar to CG11206-PA

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KAZN (kazrin, periplakin interacting protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Kazn (kazrin, periplakin interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kazn (kazrin, periplakin interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KAZN (kazrin, periplakin interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KAZN (kazrin, periplakin interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kazn (kazrin, periplakin interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KAZN (kazrin, periplakin interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KAZN (kazrin, periplakin interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kazn (kazrin, periplakin interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Kazn (kazrin, periplakin interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Kazn (kazrin, periplakin interacting protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	KAZN (kazrin, periplakin interacting protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kaznb (kazrin, periplakin interacting protein b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kaznb (kazrin, periplakin interacting protein b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kazna (kazrin, periplakin interacting protein a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	kazna (kazrin, periplakin interacting protein a)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Liprin-gamma	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Liprin-gamma	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	kazn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	kazn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	159,675,803 - 160,666,084 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	159,675,803 - 160,664,154 (-)	Ensembl				GRCr8
mRatBN7.2	5	154,392,793 - 155,381,567 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	154,392,793 - 154,779,074 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	157,111,339 - 157,463,462 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	158,884,642 - 159,236,752 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	158,873,755 - 159,230,993 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	160,637,235 - 161,730,513 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	160,639,578 - 160,742,479 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	164,348,122 - 164,739,996 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	161,041,203 - 161,399,651 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	152,777,835 - 153,127,761 (-)	NCBI		Celera
RGSC_v3.1	5	161,051,390 - 161,409,839 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amphotericin B (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

butanal (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlormequat chloride (EXP)

clobetasol (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

dimethylarsinic acid (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

genistein (ISO)

ketamine (EXP)

lipopolysaccharide (ISO)

malathion (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

mitomycin C (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

N,N-diethyl-m-toluamide (EXP)

okadaic acid (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

potassium chromate (ISO)

progesterone (ISO)

propanal (ISO)

quercetin (ISO)

raloxifene (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tetraphene (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

uranium atom (ISO)

valproic acid (ISO)

vincaleukoblastine (ISO)

zearalenone (ISO)

zinc sulfate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

keratinization (IEA)

Cellular Component

anchoring junction (IEA)

cornified envelope (IEA,ISO)

cytoskeleton (IEA)

cytosol (IEA,ISO)

desmosome (IEA,ISO)

nuclear speck (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15337775	PMID:15632090

Genomics

Comparative Map Data

Kazn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	159,675,803 - 160,666,084 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	159,675,803 - 160,664,154 (-)	Ensembl				GRCr8
mRatBN7.2	5	154,392,793 - 155,381,567 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	154,392,793 - 154,779,074 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	157,111,339 - 157,463,462 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	158,884,642 - 159,236,752 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	158,873,755 - 159,230,993 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	160,637,235 - 161,730,513 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	160,639,578 - 160,742,479 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	164,348,122 - 164,739,996 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	161,041,203 - 161,399,651 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	152,777,835 - 153,127,761 (-)	NCBI		Celera
RGSC_v3.1	5	161,051,390 - 161,409,839 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

KAZN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	13,892,824 - 15,118,043 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	13,892,792 - 15,118,043 (+)	Ensembl			hg38	GRCh38
GRCh37	1	14,925,181 - 15,444,539 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	14,797,800 - 15,317,131 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	13,408,144 - 13,927,446 (+)	NCBI		Celera
Cytogenetic Map	1	p36.21	NCBI
HuRef	1	13,444,857 - 13,964,389 (+)	NCBI		HuRef
CHM1_1	1	14,723,693 - 15,242,861 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	13,334,833 - 14,562,121 (+)	NCBI		T2T-CHM13v2.0

Kazn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	141,829,701 - 142,801,231 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	141,829,701 - 142,205,056 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	142,102,390 - 142,239,401 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	142,102,390 - 142,239,401 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	141,658,305 - 141,795,316 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	141,374,467 - 141,426,643 (-)	NCBI		MGSCv36	mm8
Celera	4	143,919,796 - 144,298,560 (-)	NCBI		Celera
Cytogenetic Map	4	D3- E1	NCBI
cM Map	4	75.46	NCBI

Kazn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	3,003,894 - 3,063,909 (-)	Ensembl
ChiLan1.0	NW_004955527	2,963,713 - 3,970,331 (-)	NCBI	ChiLan1.0	ChiLan1.0

KAZN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	211,796,528 - 213,026,267 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	211,043,485 - 212,274,031 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	13,032,125 - 14,261,897 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	14,740,009 - 15,255,377 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	14,031,858 - 15,251,972 (+)	Ensembl			panPan2	panpan1.1

KAZN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	82,336,553 - 82,490,834 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	78,873,943 - 79,882,899 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	82,986,417 - 83,996,803 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	82,988,859 - 83,996,696 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	79,738,681 - 80,750,015 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	80,757,019 - 81,768,142 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	81,822,182 - 82,835,083 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Kazn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	36,159,375 - 37,040,368 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	2,802,891 - 2,862,978 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	2,561,729 - 2,865,137 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KAZN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	74,236,437 - 74,378,956 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	73,297,134 - 74,402,794 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	68,270,004 - 68,735,043 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KAZN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	117,154,382 - 118,374,021 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	117,154,375 - 117,237,882 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	20,868,158 - 21,394,442 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kazn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	414,993 - 1,486,004 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Kazn
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	15,092,499 - 16,071,699 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Kazn
7270 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	77
Count of miRNA genes:	65
Interacting mature miRNAs:	67
Transcripts:	ENSRNOT00000019447
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
1549904	Neuinf1	Neuroinflammation QTL 1	3	0	nervous system integrity trait (VT:0010566)	blood T lymphocyte count (CMO:0000110)	5	160111176	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	160071170	172129029	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	156396728	167181764	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	156289283	171137955	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat

Markers in Region

BE110084

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	154,704,721 - 154,704,875 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	160,961,062 - 160,961,215	NCBI	Rnor6.0
Rnor_5.0	5	164,665,455 - 164,665,608	UniSTS	Rnor5.0
RGSC_v3.4	5	161,324,497 - 161,324,650	UniSTS	RGSC3.4
Celera	5	153,053,140 - 153,053,293	UniSTS
RH 3.4 Map	5	1057.6	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH129688

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	154,427,348 - 154,427,529 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	160,673,066 - 160,673,246	NCBI	Rnor6.0
Rnor_5.0	5	164,382,836 - 164,383,016	UniSTS	Rnor5.0
RGSC_v3.4	5	161,041,257 - 161,041,437	UniSTS	RGSC3.4
Celera	5	152,777,889 - 152,778,069	UniSTS
RH 3.4 Map	5	1057.6	UniSTS
Cytogenetic Map	5	q36	UniSTS

BE097302

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	154,718,913 - 154,719,098 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	160,975,431 - 160,975,615	NCBI	Rnor6.0
Rnor_5.0	5	164,679,821 - 164,680,005	UniSTS	Rnor5.0
RGSC_v3.4	5	161,339,410 - 161,339,594	UniSTS	RGSC3.4
Celera	5	153,067,929 - 153,068,113	UniSTS
RH 3.4 Map	5	1058.2	UniSTS
Cytogenetic Map	5	q36	UniSTS

AU049336

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	154,631,118 - 154,631,281 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	160,886,864 - 160,887,026	NCBI	Rnor6.0
Rnor_5.0	5	164,592,577 - 164,592,739	UniSTS	Rnor5.0
RGSC_v3.4	5	161,250,102 - 161,250,264	UniSTS	RGSC3.4
Celera	5	152,980,767 - 152,980,929	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	13	73	188	91	90	59	73	59	6	371	180	12	168	108	97	31	26	26

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019447 ⟹ ENSRNOP00000019447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	159,675,803 - 160,664,154 (-)	Ensembl
mRatBN7.2 Ensembl	5	154,392,793 - 154,779,074 (-)	Ensembl
Rnor_6.0 Ensembl	5	160,639,578 - 160,742,479 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108272 ⟹ ENSRNOP00000079377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	154,427,301 - 154,515,626 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118606 ⟹ ENSRNOP00000088366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	159,675,803 - 159,805,188 (-)	Ensembl
mRatBN7.2 Ensembl	5	154,427,301 - 154,522,260 (-)	Ensembl

RefSeq Acc Id:

NM_001014070 ⟹ NP_001014092

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,710,298 - 160,061,881 (-)	NCBI
mRatBN7.2	5	154,427,292 - 154,778,913 (-)	NCBI
Rnor_6.0	5	160,673,012 - 161,035,539 (-)	NCBI
Rnor_5.0	5	164,348,122 - 164,739,996 (-)	NCBI
RGSC_v3.4	5	161,041,203 - 161,399,651 (-)	RGD
Celera	5	152,777,835 - 153,127,761 (-)	RGD

Sequence:

show sequence

CTGCGCCGGAGGAGCCGGCGCTTGCCGGTGCCTGGGGGTCGGGGCGCGGGGAAACCCGGGCCGC
TGGGGTGACCCAACAGGTAGAGCCGGGGCCACGGCCGGCCACGCGCCCCCCGCGTGCATCATGC
AGCTCTTTGTCACCTCTCTCGCCCCCAGGCCAAAATCCTGAGCATGATGGAAGACAATAAGCAG
CTCGCGCTCCGCATCGATGGGGCGGTCCAGTCGGCCAGCCAGGAGGTGACCAACCTGCGAGCCG
AACTCACGGCCACCAACCGGAGACTGGCGGAATTGAGCGGCGGAGGCGGCGGCCCCGGCTCGGG
CCCGGGAGCTGCGACCAGCGCCTCGGCAGCAGCGGTGACGGTGGCTGACTCGGCGGTGGCGACC
ATGGAGAACCATCAGCACGGAGCTCAAGTGCTCCTGCGGGAGGAAGTGGTCCAGCTTCAGGAGG
AAGTCCACCTTCTCCGACAGATGAAGGAAATGCTGGCAAAGGACCTAGAGGAGTCACAGGGCGG
CAAATGCTCCGAGGTGCTGTCGGCCACTGAACTCCGGGTGCAGCTGGTACAGAAGGAGCAGGAG
CTGGCCAGAGCCAGGGAAGCCTTGCAAGCCATGAAAGCTGACCGGAAGCGCTTAAAGGGCGAGA
AGACCGACCTGGTGAGCCAGATGCAGCAGTTGTACGCCACGCTGGAGAGCCGCGAGGAGCAGTT
GCGAGACTTCATCCGCAACTATGAACAACACCGCAAGGAGAGTGAGGATGCTGTCAAAGCGCTG
GCCAAGGAGAAAGACCTGCTGGAGCGAGAGAAGTGGGAGCTCCGACGGCAGGCCAAGGAGGCCA
CGGACCATGCTGCGGCCCTGCGCTCCCAGCTGGACCTCAAGGACAACCGCATGAAGGAGCTGGA
GGCCGAGCTAGCCATGGCCAAGCAGTCCTTAGCCACACTGACCAAGGATGTTCCCAAGAGGCAT
TCACTCGCCATGCCCGGCGAGACGGTGCTCAATGGCAACCAGGAATGGGTGGTGCAGGCTGACC
TCCCACTGACTGCCGCCATCCGGCAGAGCCAACAGACTCTCTACCACTCCCACCCTCCCCACCC
TGCAGACCGACAAGCGGTCAGGGTGAGCCCCTGCCACTCAAGACAGCCTTCCGTCATCTCTGAT
GCTTCCGCTGCTGAAGGTGACCGGTCATCTACACCGAGCGACATCAACTCCCCAAGACACCGGA
CACACTCCCTCTGCAACGGCGACAGTCCCGGCCCAGTTCAGAAGAGCCTACACAACCCTATTGT
ACAGTCACTAGAGGATCTTGAAGACCAAAAACGGAAAAAGAAGAAAGAGAAGATGGGATTTGGC
TCCATCTCTCGAGTCTTCGCCAGAGGGAAACAACGGAAGTCCCTCGACCCGGGCCTCTTTGATG
GTACCGCCCCTGATTATTACATAGAGGAAGACGCGGACTGGTGATAACCCACCGCCCTCCGCCC
GTTGTCCACGGGCGTGTCTGTGTGTGGATGAGCCTTGGAGAGTGTGCGAGAGTGTGCGTGCGCG
TGGGGATGCGGAGCCTGTGTGTGGGGTGTGTGTGCACGGAGGCACTCGCCCTCGTGGGTGCGTG
TAGCCAAGCGCCTGGAACAGACAGAAACACAAATGTGACCCCCAACCCCCCTCCGCGTCGTCAC
CTCTGTAATCGCTGTACATACCACAAACCGTGTGTGACTCTGTCAACCCCGTTGTCTCTGAGCG
ATACACTTGTGTTTGTTTCTCTCGTTTGTTTTGTTTTTCGATGTTTTTTGGGGGGGGGGGTTGT
TTGTTTGTTTCTGTTTAAATCCGTCGTGTTTTTGTTTTTAATTTGCCCCTTTCTCCTCCCTCCT
CCCTTTTTATGAAACTTGAACACTTGAAGGACTGCTGTGTATTTGTAAATAACAAAAGTAGTGT
GCACTTTGTGCTTGTAAAGTCCCTGGTCCAGCCGCTACTCCTACAGCCCACGTCGCCAAGGACG
CGCGGTCTGTGTTTCATGTCCCCTCCTTCTTCGGTGTGAACGTGTGGGACCAGACCTTGTTCTC
GGGGTGTGCCCGAGTCACTTTAACCACAAAAACACCCCCGCCATCGTCGTCAGGGTAAGGTCAC
TCTGCAGAGACCCGTGAGCCCATCCAAGACTTTTTGGCTGGGCCACAGTGTTTATAAGGGGGTC
ATATGGGCTCTTTTTAATGGCCTGCCTGTTTTTAAATTGTGTTGCTGTTTCTTTCTTTATGGAG
CAAAAAGAGAGAAAGAAAACTTGCATTTAATTTATTTGCACAAATGCAGAAAGCGTATTCTATC
TAAATTATTACGTAAATATTGGAATGTATATTTTTCCACGGGGTGGGCGGGAGGCGGGCGTTTC
TGCTGACTTGTCTATTCTGTGTTCATGCCGCTGCAGACACTGTGCAAGGTAGAATTCAGGTGGC
TAGAGCTGGGGACCTCAGACGACCAGCTTGCTTCTTCTTTTTTTCTCTTTTCTGTCCCCCCCCC
CCCGGCTGCTGTCCCTGCATGAGAGGACTCCCACCTTCTGCTCTGGCCTTTCTCTCTAGATATT
CTCTCTCTTTATATATATATCTATATATTTATTTATCTGACATACAGATCATGACTTCGGTGAG
CAGAGAACACTAACAGTCAAATTCCCCTTCTCTTGGACCTGTCTTTGGAACCATGTTGATTGAG
ACAAGGGAAGGTTAGCCTGGGGCACATCTGTGGGGTCTAACCAGACATCTGGGCTTGAGTCAGT
GGGTAAGAGGCTCCTGGTGGCACATACACAATGCCTCTCTATCCTTAGCTTATTCCAAACATAG
GGCAAGCCAGTGTCAACAAAGATGATGCCCACCTTCTGGGAGGGGCTGTTGGGGGCAGTATCTA
GCAGGCAAGCCCTTTGCCCTCTTTCGTCCAGTTGACTTCTTTGCCCACACATGGACTTTCTCAT
AATCCCTGGATCCCTGTCCTCTGATTATATCAGCGACTCAAGCAGACTAAGCCCAAAAGGGCTG
GCAGGTGCCTGTGCCTGTTTGTGGGGGTAGCACTGTCCCTATGGGGCCTCACCTGGGGCATGGA
GAACCCACAAGTTTCCAGCCAGTACCACCCCACCCCCGAACTCAGTTTCCTCTTTCTCTCCTCC
CCATCCCCTTTTAACTGATCCTAAACCACTAATAACTCAGCCCACACCCCTTATGGCCACTGCT
GTGCTCCCTCTAACAGAAACATTCTCAACTCTTGAAAGATTTTTCAGTACCGGATGGAAAATCT
GGAATGTATAGGATCTTGTGTCCAAAGTCTCTAAAAAAACAAGCCAAAAAGCCCCTCACCAGGT
CACCTCTTCCCTCCCGACCTGGCCCAGAGGCCGGAGAGAGAGCAGGCAGGGACACCAGATGGGC
CTTCCTGGGTACACAACAACCCTTTCGGCTCAGCTGATTAACCCAGCCTGGTGGTGAGGGAGAG
AGGCCAGAGCTGGCATCAGAGGGAGGTCTTAGAAAACACTACCCCCACCCCATGAATTTTCGGG
TTTTCTTTTCCTTTCTTTTTTTTATGGTTCCCCCACACACACCCTTCCTTTTAACTTACAAGAA
AATAAGGTTGCAACCACTCCCGGTTAATGGCTTAGTCACTCCTCTTCGTTTCAGTTTTTTGGAA
ATTAGGAGATTATCCTGTGAGTTACTAAGGATGGTTTATTTTCGAGAACCACATCAGATAGGGA
ATGAGTTATGGGTAACTCTAGATGAAAATGACCCTTCCCCCCCCCCCGGGAGAGGTTTCTCGAA
GGCATGGATGCAAAATATAAAATATTAAAAAAAAGTCTAAATAAAGCTTATTTTAAAATAAAAA
AAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001415945 ⟹ NP_001402874

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,675,803 - 160,061,881 (-)	NCBI
mRatBN7.2	5	154,392,794 - 154,778,913 (-)	NCBI

RefSeq Acc Id:

XM_006239310 ⟹ XP_006239372

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,675,803 - 160,435,617 (-)	NCBI
mRatBN7.2	5	154,392,793 - 155,152,694 (-)	NCBI
Rnor_6.0	5	160,637,235 - 161,496,657 (-)	NCBI
Rnor_5.0	5	164,348,122 - 164,739,996 (-)	NCBI

Sequence:

show sequence

AGGCTGCTGGCCAGGGAACACCGTGCAGTCATTGCACACCCTAAATGACCAGATTTCCCATTTC
ATTGTCACCAAGTCGAAGGCACTGGAGGAAGACGATGACCCCTTTCTACCCACGGAGAAAGAGA
CACTGAAGAACTCGATGATACTGATGAGACATCTCTTAATGGATGCCCAGGCCAAAATCCTGAG
CATGATGGAAGACAATAAGCAGCTCGCGCTCCGCATCGATGGGGCGGTCCAGTCGGCCAGCCAG
GAGGTGACCAACCTGCGAGCCGAACTCACGGCCACCAACCGGAGACTGGCGGAATTGAGCGGCG
GAGGCGGCGGCCCCGGCTCGGGCCCGGGAGCTGCGACCAGCGCCTCGGCAGCAGCGGTGACGGT
GGCTGACTCGGCGGTGGCGACCATGGAGAACCATCAGCACGGAGCTCAAGTGCTCCTGCGGGAG
GAAGTGGTCCAGCTTCAGGAGGAAGTCCACCTTCTCCGACAGATGAAGGAAATGCTGGCAAAGG
ACCTAGAGGAGTCACAGGGCGGCAAATGCTCCGAGGTGCTGTCGGCCACTGAACTCCGGGTGCA
GCTGGTACAGAAGGAGCAGGAGCTGGCCAGAGCCAGGGAAGCCTTGCAAGCCATGAAAGCTGAC
CGGAAGCGCTTAAAGGGCGAGAAGACCGACCTGGTGAGCCAGATGCAGCAGTTGTACGCCACGC
TGGAGAGCCGCGAGGAGCAGTTGCGAGACTTCATCCGCAACTATGAACAACACCGCAAGGAGAG
TGAGGATGCTGTCAAAGCGCTGGCCAAGGAGAAAGACCTGCTGGAGCGAGAGAAGTGGGAGCTC
CGACGGCAGGCCAAGGAGGCCACGGACCATGCTGCGGCCCTGCGCTCCCAGCTGGACCTCAAGG
ACAACCGCATGAAGGAGCTGGAGGCCGAGCTAGCCATGGCCAAGCAGTCCTTAGCCACACTGAC
CAAGGATGTTCCCAAGAGGCATTCACTCGCCATGCCCGGCGAGACGGTGCTCAATGGCAACCAG
GAATGGGTGGTGCAGGCTGACCTCCCACTGACTGCCGCCATCCGGCAGAGCCAACAGACTCTCT
ACCACTCCCACCCTCCCCACCCTGCAGACCGACAAGCGGTCAGGGTGAGCCCCTGCCACTCAAG
ACAGCCTTCCGTCATCTCTGATGCTTCCGCTGCTGAAGGTGACCGGTCATCTACACCGAGCGAC
ATCAACTCCCCAAGACACCGGACACACTCCCTCTGCAACGGCGACAGTCCCGGCCCAGTTCAGA
AGAGCCTACACAACCCTATTGTACAGTCACTAGAGGATCTTGAAGACCAAAAACGGAAAAAGAA
GAAAGAGAAGATGGGATTTGGCTCCATCTCTCGAGTCTTCGCCAGAGGGAAACAACGGAAGTCC
CTCGACCCGGGCCTCTTTGATGACTCCGACAGCCAGTGCAGCCCCACACGCCACAGCCTCAGCC
TGTCTGAGGGAGAGGAGCAGATGGACCGTCTACAGCACGTGGAGCTGGTGAGGACCACGCCCAT
GTCCCACTGGAAGGCTGGCACGGTGCAAGCCTGGCTGGAGGTGGTGATGGCCATGCCCATGTAC
GTCAAGGCCTGTGCGGAGAATGTCAAGAGTGGGAAGGTGCTGCTCAGCCTGAGCGACGAGGACC
TGGAGTTGGGCCTTGGTGTGTGCAGCTCCTTGCACAGGCGCAAGCTCCGACTGGCCATTGAGGA
CTACCGAGATGCCGAGGCGGGCCGCAGCCTGTCCAAAGCCGCCGACCTGGACCATCACTGGGTG
GCCAAGGCCTGGCTGAACGACATTGGCCTGTCCCAGTATTCCCAGGCCTTCCAGAACCACCTGG
TCGATGGGAGGATGCTGAACTCGCTGATGAAGAGGGACCTGGAGAAGCATCTGAACGTGTCCAA
GAAGTTTCACCAAGTTAGCATCTTGCTAGGGATCGAGCTGCTGTACCAAGTGAACTTCAGCAGG
GAGGCCCTCCAGGAGCGCAGAGCCCGCTGTGAAACACAGAACACAGACCCTGTGGTCTGGACCA
ACCAGCGGGTGCTCAAGTGGGTGCGAGATATCGACCTGAAGGAGTATGCCGACAACCTGACCAA
CAGCGGAGTCCACGGTGCTGTGCTGGTCCTGGAGCCCACGTTCAATGCTGAGGCCATGGCCACC
GCCCTGGGCATCCCCAGCGGGAAGCACATCCTCAGGAGACACCTGGCAGAGGAGATGAGCACCG
TCTTCCATCCAGCCAACTCCACAGGCATCCGAGAGTCTGAGCGCTTTGGGACACCGCCTGGCAG
GGCCTCCAGCATCACCAGAGCTGGGAAAGAGGACGGTAGCAGTAACAGCAAGTACAGAACTGGC
CGGCTGCCCCTGGGGAAGATAGGAAGAGGCTTCAGCAGCAAAGAGCCTGATTACTATGATGACT
ATGGCTCTCTGGAGAACGAGGACTGCGGGGACGATGACCTCCAAGGCAGGCCCGAGCAGTGTCG
TCTGGAGGAATACAGCAGCTTGGAGGTCACCAATGTGTAAGAAAGCCATGTGCCTCAACTCCAG
AACAGGGAGGAGGAGGAGGAGCCCAGTGTCCCAGAGCCGTCCATCCCCACTGTACAGCATGACC
CGGAGCTGAGGACAGACAGGCGTCAGAACAGAGTTCCCAGAGACGGTCACAATTTCCAGGGGGC
ACCAAGGACAGAGAATGCCCACCTTGGTGTCCTGTATCTCTGAGGACAGATCATCCGGTCACCA
CCCAGTGGGTGGCCCGGGTGCTGCTGGTTCTTTACACTGAACCTTCAAGGACAGTCAAGGAGGG
TCAGTCTTGTGGACCTGGAACACCCTGCCGGGAGGAGTAGGAAAGCCACTCAGCCTTGGCAGAG
CCAGGGACACTGAGAACCAATTGCAAAGCCAACCAGCAGCTGCCAGGTGATGGACGCTGACCAT
CAGCCCACTGGGCAGAGAACTTGAACTCTGACCTCCGCGTTCACTCAGGAAGGATGCAAAATGG
CCTGGGCATTGCTTCCATTTTAAGAGCAGCACATCATGAGGTGGACGTGTCGGGAGCAGGAAGG
GAATCTCTGCAGGGCAGAGGGGCCTGACAGCAGCCGCCCTAGGGGATTCAGACATCCCCTGTCA
CCAGGATGAATGTGATTTCCAGAGTGGGTTGGGGGATAGCTACCGAGTTCTGTCCCAAACAGCT
ATTCCAAGTGTGGGCATAAAATGGGAAACTGCTTGTCATTAACCCGACCAACCCCTCTGGTGAT
GTCCCTGTCAGCTGAGACAGGTAAGGTCGCCCATGAGCTAACAGAGGTGCAAATCTCACAGAAC
AAGGTCACCGGGTTGTCTGAGTGGGATCTTTTTAGCCACAGTCTTGATCTGCCAGTGTTTTGCT
GTGTGGCTTCCTCCCAGTGACCTCACCTCTCTGTGCCTCAGTGTCTTACCTATAATACTTCCGG
TTCCTTCCAGAGGAGCCGTGAGCATTAACATTCACTAACATTTGTCCCAAGCTTTGAGCCTCTC
AGGAAACAGCTGGACGGGATGGGACGTGGGGAGGAATGAGCCTAGTTCCACCCACAACATTTGC
AGACACCGGGCCAGTTCGATCCATTTTGGATGGGAGAGATAGGTAAGAGGGGAACGCAGAACGT
TTAATATTGAGAGTTTTGCCTGTGGGCCTACTGGGTGCAGGGTCCAAGCTGACTGAGCAGAGCC
TTCCTTGATGACAGGGAGGAATTCAGGGCAGCTCTGCTCTGTGCCAACTCTCCTCAGATTCCCA
GAGATGATAGGGGGGTTAGGGGATAGGCACAGCCTCTGAGCCACCAAAGTCAGACTTCTGTAGC
GGTGTAGAGAGCTTTTCTTTGTGGGAAGACCACACAAAGCCAGTAAACTTGAAAGTCACGGCCC
CCCATGTTAAAGACATCTCTCTAAGGGTCCCACAGGCATGGTCTCCCTCACAACCTGAGTCCAG
GGGCCTCGGAGATGGGGAGAAATCTTTCTGTTTGAGGCTCAGCCTCCAAAGGACACCTGGCAGA
CACCAGGACTCACAGGGTCAACCTCTGGGGTGTAACCCAGCTTGGTTCAGGCTCTACATTCCTG
AGTGTTTAAAATATGCATTCCCTGCCCCTGGAATCCTGAAGCAACTGAACCCTTAGTTCAATAA
GGAGAGGGGAGGCCCTCGTCTAATTGAAGCCAGCTGTCACTGTCAAACCAAGTCCCTAAAGGGC
TACACAGCTTCTGGAGCCAGGAATATACTGACAGCCTTCCTGGAAATGTTGCTGGCTTTGTGGG
CTCCTTGCAAGGGTAAGGTCTAGGTAGGGAGAGACTCCACACTTTCTTCCTACAGGCTGGGAGT
CAAATAGCATCAGGAGGCTCTTTCCCTGTGGACTCTGGGCCTCCATCTTGTGCATGTCTGTCTG
TCTCCATCCTCACCCAGTGGTCACTTTTAGCAGATTCTCTATTTCGACTCCTTACCACAGGTTG
CCGGGTGACTAGAGTCAGAAGTGGAGAGAGGGGCTCTCCCCTAAGCCTGGCCTGCACAGGGCAC
TTAGAACAGGGAACCCTGCCAAAGACTGAGGTCATGAAGGTAGGTGGGGTCACAGATGTAAATT
TGAACTTCAGGACCATGACTAAGAGCTCCAGCAGGATCAGGACAGCCCTTTCCAGGAGGCCCAG
GACCATTTCCCGGGTTGTGGGGGAAAGTGTCTCCTAAGTGGGTGGCAACTTCTGGGTCTCACTT
TACAGAAGCCAGTGTGGGTGGTGATGTCTCCTGCCCCGTGAAAGGTCTGTAAATGCAGGGCAAA
TGAACAGTGAACTCAGTGTCCGGCACCTTCCCGGAGGGAATTTTAACAATGTAACAATAAATGC
TTGACCTTGAGGCGA

hide sequence

RefSeq Acc Id:

XM_006239311 ⟹ XP_006239373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,675,803 - 159,805,239 (-)	NCBI
mRatBN7.2	5	154,392,793 - 154,522,252 (-)	NCBI
Rnor_6.0	5	160,637,235 - 160,769,524 (-)	NCBI
Rnor_5.0	5	164,348,122 - 164,739,996 (-)	NCBI

Sequence:

show sequence

GGTGTGTGAGGGAGGGCGTGTCCGGGGTGTGGCCAGAGGGTACCTCGGCAGCCCGGAAGGAGCG
GGAGGAGGAGCCCCCTTGATCTGGAGTTGTTCCCACGTGAGAAGATCGCGCTGGATTCCTCTGG
TGCGGCGGCCGCAGAGTGCCCGGCGCCCGGTGGGGCTGAGATCACTGGCGGGGCGCGCGTGGTC
GGCCCGATGCGGCGGCGACTCGGAGGTCTGTGAGCCGGCCGTCCGCCGTCGGAGCCCCGCGCGC
CGCCGTGGGGTCTCGCGTCCCGGTCACCCGGGATGCGGGCGGCCGATTCGGGTTCATGGGAGCG
TGTCCGCCAGCTTGCGGCACACGGCCAGCCGGCTCCGTCCTGCGGGCGGGATACCGGGCCCGCG
CGCGTCCCGGACCTCGGAGCCTGCAAGCTATGCGCGAACGCTGCGGGGCCCCGAGATCAGCAGG
GATTTGGGGCAGTTCCCGATGCAGCCGATGGCTACAGCAGCCAGCCGGTGCTCCTGCGGGAGGA
AGTGGTCCAGCTTCAGGAGGAAGTCCACCTTCTCCGACAGATGAAGGAAATGCTGGCAAAGGAC
CTAGAGGAGTCACAGGGCGGCAAATGCTCCGAGGTGCTGTCGGCCACTGAACTCCGGGTGCAGC
TGGTACAGAAGGAGCAGGAGCTGGCCAGAGCCAGGGAAGCCTTGCAAGCCATGAAAGCTGACCG
GAAGCGCTTAAAGGGCGAGAAGACCGACCTGGTGAGCCAGATGCAGCAGTTGTACGCCACGCTG
GAGAGCCGCGAGGAGCAGTTGCGAGACTTCATCCGCAACTATGAACAACACCGCAAGGAGAGTG
AGGATGCTGTCAAAGCGCTGGCCAAGGAGAAAGACCTGCTGGAGCGAGAGAAGTGGGAGCTCCG
ACGGCAGGCCAAGGAGGCCACGGACCATGCTGCGGCCCTGCGCTCCCAGCTGGACCTCAAGGAC
AACCGCATGAAGGAGCTGGAGGCCGAGCTAGCCATGGCCAAGCAGTCCTTAGCCACACTGACCA
AGGATGTTCCCAAGAGGCATTCACTCGCCATGCCCGGCGAGACGGTGCTCAATGGCAACCAGGA
ATGGGTGGTGCAGGCTGACCTCCCACTGACTGCCGCCATCCGGCAGAGCCAACAGACTCTCTAC
CACTCCCACCCTCCCCACCCTGCAGACCGACAAGCGGTCAGGGTGAGCCCCTGCCACTCAAGAC
AGCCTTCCGTCATCTCTGATGCTTCCGCTGCTGAAGGTGACCGGTCATCTACACCGAGCGACAT
CAACTCCCCAAGACACCGGACACACTCCCTCTGCAACGGCGACAGTCCCGGCCCAGTTCAGAAG
AGCCTACACAACCCTATTGTACAGTCACTAGAGGATCTTGAAGACCAAAAACGGAAAAAGAAGA
AAGAGAAGATGGGATTTGGCTCCATCTCTCGAGTCTTCGCCAGAGGGAAACAACGGAAGTCCCT
CGACCCGGGCCTCTTTGATGACTCCGACAGCCAGTGCAGCCCCACACGCCACAGCCTCAGCCTG
TCTGAGGGAGAGGAGCAGATGGACCGTCTACAGCACGTGGAGCTGGTGAGGACCACGCCCATGT
CCCACTGGAAGGCTGGCACGGTGCAAGCCTGGCTGGAGGTGGTGATGGCCATGCCCATGTACGT
CAAGGCCTGTGCGGAGAATGTCAAGAGTGGGAAGGTGCTGCTCAGCCTGAGCGACGAGGACCTG
GAGTTGGGCCTTGGTGTGTGCAGCTCCTTGCACAGGCGCAAGCTCCGACTGGCCATTGAGGACT
ACCGAGATGCCGAGGCGGGCCGCAGCCTGTCCAAAGCCGCCGACCTGGACCATCACTGGGTGGC
CAAGGCCTGGCTGAACGACATTGGCCTGTCCCAGTATTCCCAGGCCTTCCAGAACCACCTGGTC
GATGGGAGGATGCTGAACTCGCTGATGAAGAGGGACCTGGAGAAGCATCTGAACGTGTCCAAGA
AGTTTCACCAAGTTAGCATCTTGCTAGGGATCGAGCTGCTGTACCAAGTGAACTTCAGCAGGGA
GGCCCTCCAGGAGCGCAGAGCCCGCTGTGAAACACAGAACACAGACCCTGTGGTCTGGACCAAC
CAGCGGGTGCTCAAGTGGGTGCGAGATATCGACCTGAAGGAGTATGCCGACAACCTGACCAACA
GCGGAGTCCACGGTGCTGTGCTGGTCCTGGAGCCCACGTTCAATGCTGAGGCCATGGCCACCGC
CCTGGGCATCCCCAGCGGGAAGCACATCCTCAGGAGACACCTGGCAGAGGAGATGAGCACCGTC
TTCCATCCAGCCAACTCCACAGGCATCCGAGAGTCTGAGCGCTTTGGGACACCGCCTGGCAGGG
CCTCCAGCATCACCAGAGCTGGGAAAGAGGACGGTAGCAGTAACAGCAAGTACAGAACTGGCCG
GCTGCCCCTGGGGAAGATAGGAAGAGGCTTCAGCAGCAAAGAGCCTGATTACTATGATGACTAT
GGCTCTCTGGAGAACGAGGACTGCGGGGACGATGACCTCCAAGGCAGGCCCGAGCAGTGTCGTC
TGGAGGAATACAGCAGCTTGGAGGTCACCAATGTGTAAGAAAGCCATGTGCCTCAACTCCAGAA
CAGGGAGGAGGAGGAGGAGCCCAGTGTCCCAGAGCCGTCCATCCCCACTGTACAGCATGACCCG
GAGCTGAGGACAGACAGGCGTCAGAACAGAGTTCCCAGAGACGGTCACAATTTCCAGGGGGCAC
CAAGGACAGAGAATGCCCACCTTGGTGTCCTGTATCTCTGAGGACAGATCATCCGGTCACCACC
CAGTGGGTGGCCCGGGTGCTGCTGGTTCTTTACACTGAACCTTCAAGGACAGTCAAGGAGGGTC
AGTCTTGTGGACCTGGAACACCCTGCCGGGAGGAGTAGGAAAGCCACTCAGCCTTGGCAGAGCC
AGGGACACTGAGAACCAATTGCAAAGCCAACCAGCAGCTGCCAGGTGATGGACGCTGACCATCA
GCCCACTGGGCAGAGAACTTGAACTCTGACCTCCGCGTTCACTCAGGAAGGATGCAAAATGGCC
TGGGCATTGCTTCCATTTTAAGAGCAGCACATCATGAGGTGGACGTGTCGGGAGCAGGAAGGGA
ATCTCTGCAGGGCAGAGGGGCCTGACAGCAGCCGCCCTAGGGGATTCAGACATCCCCTGTCACC
AGGATGAATGTGATTTCCAGAGTGGGTTGGGGGATAGCTACCGAGTTCTGTCCCAAACAGCTAT
TCCAAGTGTGGGCATAAAATGGGAAACTGCTTGTCATTAACCCGACCAACCCCTCTGGTGATGT
CCCTGTCAGCTGAGACAGGTAAGGTCGCCCATGAGCTAACAGAGGTGCAAATCTCACAGAACAA
GGTCACCGGGTTGTCTGAGTGGGATCTTTTTAGCCACAGTCTTGATCTGCCAGTGTTTTGCTGT
GTGGCTTCCTCCCAGTGACCTCACCTCTCTGTGCCTCAGTGTCTTACCTATAATACTTCCGGTT
CCTTCCAGAGGAGCCGTGAGCATTAACATTCACTAACATTTGTCCCAAGCTTTGAGCCTCTCAG
GAAACAGCTGGACGGGATGGGACGTGGGGAGGAATGAGCCTAGTTCCACCCACAACATTTGCAG
ACACCGGGCCAGTTCGATCCATTTTGGATGGGAGAGATAGGTAAGAGGGGAACGCAGAACGTTT
AATATTGAGAGTTTTGCCTGTGGGCCTACTGGGTGCAGGGTCCAAGCTGACTGAGCAGAGCCTT
CCTTGATGACAGGGAGGAATTCAGGGCAGCTCTGCTCTGTGCCAACTCTCCTCAGATTCCCAGA
GATGATAGGGGGGTTAGGGGATAGGCACAGCCTCTGAGCCACCAAAGTCAGACTTCTGTAGCGG
TGTAGAGAGCTTTTCTTTGTGGGAAGACCACACAAAGCCAGTAAACTTGAAAGTCACGGCCCCC
CATGTTAAAGACATCTCTCTAAGGGTCCCACAGGCATGGTCTCCCTCACAACCTGAGTCCAGGG
GCCTCGGAGATGGGGAGAAATCTTTCTGTTTGAGGCTCAGCCTCCAAAGGACACCTGGCAGACA
CCAGGACTCACAGGGTCAACCTCTGGGGTGTAACCCAGCTTGGTTCAGGCTCTACATTCCTGAG
TGTTTAAAATATGCATTCCCTGCCCCTGGAATCCTGAAGCAACTGAACCCTTAGTTCAATAAGG
AGAGGGGAGGCCCTCGTCTAATTGAAGCCAGCTGTCACTGTCAAACCAAGTCCCTAAAGGGCTA
CACAGCTTCTGGAGCCAGGAATATACTGACAGCCTTCCTGGAAATGTTGCTGGCTTTGTGGGCT
CCTTGCAAGGGTAAGGTCTAGGTAGGGAGAGACTCCACACTTTCTTCCTACAGGCTGGGAGTCA
AATAGCATCAGGAGGCTCTTTCCCTGTGGACTCTGGGCCTCCATCTTGTGCATGTCTGTCTGTC
TCCATCCTCACCCAGTGGTCACTTTTAGCAGATTCTCTATTTCGACTCCTTACCACAGGTTGCC
GGGTGACTAGAGTCAGAAGTGGAGAGAGGGGCTCTCCCCTAAGCCTGGCCTGCACAGGGCACTT
AGAACAGGGAACCCTGCCAAAGACTGAGGTCATGAAGGTAGGTGGGGTCACAGATGTAAATTTG
AACTTCAGGACCATGACTAAGAGCTCCAGCAGGATCAGGACAGCCCTTTCCAGGAGGCCCAGGA
CCATTTCCCGGGTTGTGGGGGAAAGTGTCTCCTAAGTGGGTGGCAACTTCTGGGTCTCACTTTA
CAGAAGCCAGTGTGGGTGGTGATGTCTCCTGCCCCGTGAAAGGTCTGTAAATGCAGGGCAAATG
AACAGTGAACTCAGTGTCCGGCACCTTCCCGGAGGGAATTTTAACAATGTAACAATAAATGCTT
GACCTTGAGGCGA

hide sequence

RefSeq Acc Id:

XM_017593423 ⟹ XP_017448912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,675,803 - 160,666,084 (-)	NCBI
mRatBN7.2	5	154,392,793 - 155,381,567 (-)	NCBI
Rnor_6.0	5	160,637,235 - 161,730,513 (-)	NCBI

Sequence:

show sequence

CTTTAAGACCCAGTGTCACTGGGGCAGTGGTTGTATCCTGTGGCTATCCCCACTTTCTAGACTA
ACTGCCCCTGTCCTTTGTAATAGTGGGTCTGAACATTCTCCTCCCAGCCCAGGGTTAGGGTGTC
TAAGATACAGCCCTCGCTGTTTTCTCCCTTCAGGGAGAAACGGATGACTCGTCTCTGGTCTCTG
GTCTCCTCTCCTGGATCTGTAAATTCCATGGCCAGCAGTCTGGTGTCCCAGGTCTGACGCTTCC
TTGGCTGTGGACATGAAGAGGTTACTCCAGCCTTGGAGCCTGCTGGGCTGAGTTAGCACTTCCC
TTCCACATCCAGGAGCTCTCTCCAAGTAACAGCCCCCTTTGCATCACCGAGAGGGGATAGCAGA
GCAGGCTAGGGACACCGCTGCAGTAGGTCGCAGCAGGGGTTCTGTCAGCACGTGTCATCGCGTG
GATTCCCACCGTCAGGTCAGGCGGCCAGGAACTGGAAGGCAAAGGCATTCAGAGGAGTGAAGGA
TGAGCCAGCGACGCCGGTGCCCCCGCAGCTGCAGAGCGCTCCGCTGGAACTGCTGCCGCCGCTA
CTGCTGTCGCTGCGCACGCCTCTTGCTGCCTCCCCAGGCTGCAGCGGCCCCTGGGACCCAGAAG
CCAGACTGGAGCCACAGAGATCCAACCAGGACCCAGGAGCCACGGACTGCCGCCTGTGAGACCA
GCTCCCCAGGGAGCCTGGGCAGCGCTTTGCTGGCTGCCGGTGCAGGACTGGAGACCTCTCTAGC
CAGTGTGGCTGAGGAGGAATCGGCTCTTCCCTAGTCACAGGAGCGGCCCATCCACATCCAGGCT
TCTTTCTGGAGCAGAGGAAGTAACTCCTGTTGGGGCAGCTTAGATTGAGCTCTACCGCTAAGGC
TTGTACACCCCACCCCCTTATTTGCAGAGCCTTCCGGTGTCATTTCTCACCTGACAGGTTTGAG
AAAAGAAAAAAAAAACCCACAAAGACAGAGCTGAGTGCAGAGCCTTGTAAACTTTGGAGGCGGG
AACATTCTCTTGAAGAGGACAAGTGGCCCCAAATCTACCACTGTTCTTGCGCTAGTGGCAAAGC
CTGTTGGTGGGACACCAGCCACAAGGCCAACCGCAAGGACCTACCAGACCGTCATGGAGTCCGT
GTTGACAGCATCCAGTTCCCCCACAGGCCGTGTTACCTTCTCCCGTGTCTTCGGCCAACAGTGC
CAGCTAATGGAAGCAGCCGTGCAGTCATTGCACACCCTAAATGACCAGATTTCCCATTTCATTG
TCACCAAGTCGAAGGCACTGGAGGAAGACGATGACCCCTTTCTACCCACGGAGAAAGAGACACT
GAAGAACTCGATGATACTGATGAGACATCTCTTAATGGATGCCCAGGCCAAAATCCTGAGCATG
ATGGAAGACAATAAGCAGCTCGCGCTCCGCATCGATGGGGCGGTCCAGTCGGCCAGCCAGGAGG
TGACCAACCTGCGAGCCGAACTCACGGCCACCAACCGGAGACTGGCGGAATTGAGCGGCGGAGG
CGGCGGCCCCGGCTCGGGCCCGGGAGCTGCGACCAGCGCCTCGGCAGCAGCGGTGACGGTGGCT
GACTCGGCGGTGGCGACCATGGAGAACCATCAGCACGGAGCTCAAGTGCTCCTGCGGGAGGAAG
TGGTCCAGCTTCAGGAGGAAGTCCACCTTCTCCGACAGATGAAGGAAATGCTGGCAAAGGACCT
AGAGGAGTCACAGGGCGGCAAATGCTCCGAGGTGCTGTCGGCCACTGAACTCCGGGTGCAGCTG
GTACAGAAGGAGCAGGAGCTGGCCAGAGCCAGGGAAGCCTTGCAAGCCATGAAAGCTGACCGGA
AGCGCTTAAAGGGCGAGAAGACCGACCTGGTGAGCCAGATGCAGCAGTTGTACGCCACGCTGGA
GAGCCGCGAGGAGCAGTTGCGAGACTTCATCCGCAACTATGAACAACACCGCAAGGAGAGTGAG
GATGCTGTCAAAGCGCTGGCCAAGGAGAAAGACCTGCTGGAGCGAGAGAAGTGGGAGCTCCGAC
GGCAGGCCAAGGAGGCCACGGACCATGCTGCGGCCCTGCGCTCCCAGCTGGACCTCAAGGACAA
CCGCATGAAGGAGCTGGAGGCCGAGCTAGCCATGGCCAAGCAGTCCTTAGCCACACTGACCAAG
GATGTTCCCAAGAGGCATTCACTCGCCATGCCCGGCGAGACGGTGCTCAATGGCAACCAGGAAT
GGGTGGTGCAGGCTGACCTCCCACTGACTGCCGCCATCCGGCAGAGCCAACAGACTCTCTACCA
CTCCCACCCTCCCCACCCTGCAGACCGACAAGCGGTCAGGGTGAGCCCCTGCCACTCAAGACAG
CCTTCCGTCATCTCTGATGCTTCCGCTGCTGAAGGTGACCGGTCATCTACACCGAGCGACATCA
ACTCCCCAAGACACCGGACACACTCCCTCTGCAACGGCGACAGTCCCGGCCCAGTTCAGAAGAG
CCTACACAACCCTATTGTACAGTCACTAGAGGATCTTGAAGACCAAAAACGGAAAAAGAAGAAA
GAGAAGATGGGATTTGGCTCCATCTCTCGAGTCTTCGCCAGAGGGAAACAACGGAAGTCCCTCG
ACCCGGGCCTCTTTGATGACTCCGACAGCCAGTGCAGCCCCACACGCCACAGCCTCAGCCTGTC
TGAGGGAGAGGAGCAGATGGACCGTCTACAGCACGTGGAGCTGGTGAGGACCACGCCCATGTCC
CACTGGAAGGCTGGCACGGTGCAAGCCTGGCTGGAGGTGGTGATGGCCATGCCCATGTACGTCA
AGGCCTGTGCGGAGAATGTCAAGAGTGGGAAGGTGCTGCTCAGCCTGAGCGACGAGGACCTGGA
GTTGGGCCTTGGTGTGTGCAGCTCCTTGCACAGGCGCAAGCTCCGACTGGCCATTGAGGACTAC
CGAGATGCCGAGGCGGGCCGCAGCCTGTCCAAAGCCGCCGACCTGGACCATCACTGGGTGGCCA
AGGCCTGGCTGAACGACATTGGCCTGTCCCAGTATTCCCAGGCCTTCCAGAACCACCTGGTCGA
TGGGAGGATGCTGAACTCGCTGATGAAGAGGGACCTGGAGAAGCATCTGAACGTGTCCAAGAAG
TTTCACCAAGTTAGCATCTTGCTAGGGATCGAGCTGCTGTACCAAGTGAACTTCAGCAGGGAGG
CCCTCCAGGAGCGCAGAGCCCGCTGTGAAACACAGAACACAGACCCTGTGGTCTGGACCAACCA
GCGGGTGCTCAAGTGGGTGCGAGATATCGACCTGAAGGAGTATGCCGACAACCTGACCAACAGC
GGAGTCCACGGTGCTGTGCTGGTCCTGGAGCCCACGTTCAATGCTGAGGCCATGGCCACCGCCC
TGGGCATCCCCAGCGGGAAGCACATCCTCAGGAGACACCTGGCAGAGGAGATGAGCACCGTCTT
CCATCCAGCCAACTCCACAGGCATCCGAGAGTCTGAGCGCTTTGGGACACCGCCTGGCAGGGCC
TCCAGCATCACCAGAGCTGGGAAAGAGGACGGTAGCAGTAACAGCAAGTACAGAACTGGCCGGC
TGCCCCTGGGGAAGATAGGAAGAGGCTTCAGCAGCAAAGAGCCTGATTACTATGATGACTATGG
CTCTCTGGAGAACGAGGACTGCGGGGACGATGACCTCCAAGGCAGGCCCGAGCAGTGTCGTCTG
GAGGAATACAGCAGCTTGGAGGTCACCAATGTGTAAGAAAGCCATGTGCCTCAACTCCAGAACA
GGGAGGAGGAGGAGGAGCCCAGTGTCCCAGAGCCGTCCATCCCCACTGTACAGCATGACCCGGA
GCTGAGGACAGACAGGCGTCAGAACAGAGTTCCCAGAGACGGTCACAATTTCCAGGGGGCACCA
AGGACAGAGAATGCCCACCTTGGTGTCCTGTATCTCTGAGGACAGATCATCCGGTCACCACCCA
GTGGGTGGCCCGGGTGCTGCTGGTTCTTTACACTGAACCTTCAAGGACAGTCAAGGAGGGTCAG
TCTTGTGGACCTGGAACACCCTGCCGGGAGGAGTAGGAAAGCCACTCAGCCTTGGCAGAGCCAG
GGACACTGAGAACCAATTGCAAAGCCAACCAGCAGCTGCCAGGTGATGGACGCTGACCATCAGC
CCACTGGGCAGAGAACTTGAACTCTGACCTCCGCGTTCACTCAGGAAGGATGCAAAATGGCCTG
GGCATTGCTTCCATTTTAAGAGCAGCACATCATGAGGTGGACGTGTCGGGAGCAGGAAGGGAAT
CTCTGCAGGGCAGAGGGGCCTGACAGCAGCCGCCCTAGGGGATTCAGACATCCCCTGTCACCAG
GATGAATGTGATTTCCAGAGTGGGTTGGGGGATAGCTACCGAGTTCTGTCCCAAACAGCTATTC
CAAGTGTGGGCATAAAATGGGAAACTGCTTGTCATTAACCCGACCAACCCCTCTGGTGATGTCC
CTGTCAGCTGAGACAGGTAAGGTCGCCCATGAGCTAACAGAGGTGCAAATCTCACAGAACAAGG
TCACCGGGTTGTCTGAGTGGGATCTTTTTAGCCACAGTCTTGATCTGCCAGTGTTTTGCTGTGT
GGCTTCCTCCCAGTGACCTCACCTCTCTGTGCCTCAGTGTCTTACCTATAATACTTCCGGTTCC
TTCCAGAGGAGCCGTGAGCATTAACATTCACTAACATTTGTCCCAAGCTTTGAGCCTCTCAGGA
AACAGCTGGACGGGATGGGACGTGGGGAGGAATGAGCCTAGTTCCACCCACAACATTTGCAGAC
ACCGGGCCAGTTCGATCCATTTTGGATGGGAGAGATAGGTAAGAGGGGAACGCAGAACGTTTAA
TATTGAGAGTTTTGCCTGTGGGCCTACTGGGTGCAGGGTCCAAGCTGACTGAGCAGAGCCTTCC
TTGATGACAGGGAGGAATTCAGGGCAGCTCTGCTCTGTGCCAACTCTCCTCAGATTCCCAGAGA
TGATAGGGGGGTTAGGGGATAGGCACAGCCTCTGAGCCACCAAAGTCAGACTTCTGTAGCGGTG
TAGAGAGCTTTTCTTTGTGGGAAGACCACACAAAGCCAGTAAACTTGAAAGTCACGGCCCCCCA
TGTTAAAGACATCTCTCTAAGGGTCCCACAGGCATGGTCTCCCTCACAACCTGAGTCCAGGGGC
CTCGGAGATGGGGAGAAATCTTTCTGTTTGAGGCTCAGCCTCCAAAGGACACCTGGCAGACACC
AGGACTCACAGGGTCAACCTCTGGGGTGTAACCCAGCTTGGTTCAGGCTCTACATTCCTGAGTG
TTTAAAATATGCATTCCCTGCCCCTGGAATCCTGAAGCAACTGAACCCTTAGTTCAATAAGGAG
AGGGGAGGCCCTCGTCTAATTGAAGCCAGCTGTCACTGTCAAACCAAGTCCCTAAAGGGCTACA
CAGCTTCTGGAGCCAGGAATATACTGACAGCCTTCCTGGAAATGTTGCTGGCTTTGTGGGCTCC
TTGCAAGGGTAAGGTCTAGGTAGGGAGAGACTCCACACTTTCTTCCTACAGGCTGGGAGTCAAA
TAGCATCAGGAGGCTCTTTCCCTGTGGACTCTGGGCCTCCATCTTGTGCATGTCTGTCTGTCTC
CATCCTCACCCAGTGGTCACTTTTAGCAGATTCTCTATTTCGACTCCTTACCACAGGTTGCCGG
GTGACTAGAGTCAGAAGTGGAGAGAGGGGCTCTCCCCTAAGCCTGGCCTGCACAGGGCACTTAG
AACAGGGAACCCTGCCAAAGACTGAGGTCATGAAGGTAGGTGGGGTCACAGATGTAAATTTGAA
CTTCAGGACCATGACTAAGAGCTCCAGCAGGATCAGGACAGCCCTTTCCAGGAGGCCCAGGACC
ATTTCCCGGGTTGTGGGGGAAAGTGTCTCCTAAGTGGGTGGCAACTTCTGGGTCTCACTTTACA
GAAGCCAGTGTGGGTGGTGATGTCTCCTGCCCCGTGAAAGGTCTGTAAATGCAGGGCAAATGAA
CAGTGAACTCAGTGTCCGGCACCTTCCCGGAGGGAATTTTAACAATGTAACAATAAATGCTTGA
CCTTGAGGCGA

hide sequence

RefSeq Acc Id:

XM_039110084 ⟹ XP_038966012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,675,803 - 159,786,817 (-)	NCBI
mRatBN7.2	5	154,392,793 - 154,503,742 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014092	(Get FASTA)	NCBI Sequence Viewer
	NP_001402874	(Get FASTA)	NCBI Sequence Viewer
	XP_006239372	(Get FASTA)	NCBI Sequence Viewer
	XP_006239373	(Get FASTA)	NCBI Sequence Viewer
	XP_017448912	(Get FASTA)	NCBI Sequence Viewer
	XP_038966012	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89223	(Get FASTA)	NCBI Sequence Viewer
	EDL81037	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019447
	ENSRNOP00000019447.7
	ENSRNOP00000088366
GenBank Protein	Q5FWS6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001014092 ⟸ NM_001014070
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I6AAP0 (UniProtKB/TrEMBL), A6ITY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMEDNKQLALRIDGAVQSASQEVTNLRAELTATNRRLAELSGGGGGPGSGPGAATSASAAAVTV ADSAVATMENHQHGAQVLLREEVVQLQEEVHLLRQMKEMLAKDLEESQGGKCSEVLSATELRVQ LVQKEQELARAREALQAMKADRKRLKGEKTDLVSQMQQLYATLESREEQLRDFIRNYEQHRKES EDAVKALAKEKDLLEREKWELRRQAKEATDHAAALRSQLDLKDNRMKELEAELAMAKQSLATLT KDVPKRHSLAMPGETVLNGNQEWVVQADLPLTAAIRQSQQTLYHSHPPHPADRQAVRVSPCHSR QPSVISDASAAEGDRSSTPSDINSPRHRTHSLCNGDSPGPVQKSLHNPIVQSLEDLEDQKRKKK KEKMGFGSISRVFARGKQRKSLDPGLFDGTAPDYYIEEDADW hide sequence

RefSeq Acc Id:	XP_006239372 ⟸ XM_006239310
- Peptide Label:	isoform X2
- UniProtKB:	A0A0H2UHL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MILMRHLLMDAQAKILSMMEDNKQLALRIDGAVQSASQEVTNLRAELTATNRRLAELSGGGGGP GSGPGAATSASAAAVTVADSAVATMENHQHGAQVLLREEVVQLQEEVHLLRQMKEMLAKDLEES QGGKCSEVLSATELRVQLVQKEQELARAREALQAMKADRKRLKGEKTDLVSQMQQLYATLESRE EQLRDFIRNYEQHRKESEDAVKALAKEKDLLEREKWELRRQAKEATDHAAALRSQLDLKDNRMK ELEAELAMAKQSLATLTKDVPKRHSLAMPGETVLNGNQEWVVQADLPLTAAIRQSQQTLYHSHP PHPADRQAVRVSPCHSRQPSVISDASAAEGDRSSTPSDINSPRHRTHSLCNGDSPGPVQKSLHN PIVQSLEDLEDQKRKKKKEKMGFGSISRVFARGKQRKSLDPGLFDDSDSQCSPTRHSLSLSEGE EQMDRLQHVELVRTTPMSHWKAGTVQAWLEVVMAMPMYVKACAENVKSGKVLLSLSDEDLELGL GVCSSLHRRKLRLAIEDYRDAEAGRSLSKAADLDHHWVAKAWLNDIGLSQYSQAFQNHLVDGRM LNSLMKRDLEKHLNVSKKFHQVSILLGIELLYQVNFSREALQERRARCETQNTDPVVWTNQRVL KWVRDIDLKEYADNLTNSGVHGAVLVLEPTFNAEAMATALGIPSGKHILRRHLAEEMSTVFHPA NSTGIRESERFGTPPGRASSITRAGKEDGSSNSKYRTGRLPLGKIGRGFSSKEPDYYDDYGSLE NEDCGDDDLQGRPEQCRLEEYSSLEVTNV hide sequence

RefSeq Acc Id:	XP_006239373 ⟸ XM_006239311
- Peptide Label:	isoform X3
- UniProtKB:	A0A0H2UHL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRAADSGSWERVRQLAAHGQPAPSCGRDTGPARVPDLGACKLCANAAGPRDQQGFGAVPDAADG YSSQPVLLREEVVQLQEEVHLLRQMKEMLAKDLEESQGGKCSEVLSATELRVQLVQKEQELARA REALQAMKADRKRLKGEKTDLVSQMQQLYATLESREEQLRDFIRNYEQHRKESEDAVKALAKEK DLLEREKWELRRQAKEATDHAAALRSQLDLKDNRMKELEAELAMAKQSLATLTKDVPKRHSLAM PGETVLNGNQEWVVQADLPLTAAIRQSQQTLYHSHPPHPADRQAVRVSPCHSRQPSVISDASAA EGDRSSTPSDINSPRHRTHSLCNGDSPGPVQKSLHNPIVQSLEDLEDQKRKKKKEKMGFGSISR VFARGKQRKSLDPGLFDDSDSQCSPTRHSLSLSEGEEQMDRLQHVELVRTTPMSHWKAGTVQAW LEVVMAMPMYVKACAENVKSGKVLLSLSDEDLELGLGVCSSLHRRKLRLAIEDYRDAEAGRSLS KAADLDHHWVAKAWLNDIGLSQYSQAFQNHLVDGRMLNSLMKRDLEKHLNVSKKFHQVSILLGI ELLYQVNFSREALQERRARCETQNTDPVVWTNQRVLKWVRDIDLKEYADNLTNSGVHGAVLVLE PTFNAEAMATALGIPSGKHILRRHLAEEMSTVFHPANSTGIRESERFGTPPGRASSITRAGKED GSSNSKYRTGRLPLGKIGRGFSSKEPDYYDDYGSLENEDCGDDDLQGRPEQCRLEEYSSLEVTN V hide sequence

RefSeq Acc Id:	XP_017448912 ⟸ XM_017593423
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESVLTASSSPTGRVTFSRVFGQQCQLMEAAVQSLHTLNDQISHFIVTKSKALEEDDDPFLPTE KETLKNSMILMRHLLMDAQAKILSMMEDNKQLALRIDGAVQSASQEVTNLRAELTATNRRLAEL SGGGGGPGSGPGAATSASAAAVTVADSAVATMENHQHGAQVLLREEVVQLQEEVHLLRQMKEML AKDLEESQGGKCSEVLSATELRVQLVQKEQELARAREALQAMKADRKRLKGEKTDLVSQMQQLY ATLESREEQLRDFIRNYEQHRKESEDAVKALAKEKDLLEREKWELRRQAKEATDHAAALRSQLD LKDNRMKELEAELAMAKQSLATLTKDVPKRHSLAMPGETVLNGNQEWVVQADLPLTAAIRQSQQ TLYHSHPPHPADRQAVRVSPCHSRQPSVISDASAAEGDRSSTPSDINSPRHRTHSLCNGDSPGP VQKSLHNPIVQSLEDLEDQKRKKKKEKMGFGSISRVFARGKQRKSLDPGLFDDSDSQCSPTRHS LSLSEGEEQMDRLQHVELVRTTPMSHWKAGTVQAWLEVVMAMPMYVKACAENVKSGKVLLSLSD EDLELGLGVCSSLHRRKLRLAIEDYRDAEAGRSLSKAADLDHHWVAKAWLNDIGLSQYSQAFQN HLVDGRMLNSLMKRDLEKHLNVSKKFHQVSILLGIELLYQVNFSREALQERRARCETQNTDPVV WTNQRVLKWVRDIDLKEYADNLTNSGVHGAVLVLEPTFNAEAMATALGIPSGKHILRRHLAEEM STVFHPANSTGIRESERFGTPPGRASSITRAGKEDGSSNSKYRTGRLPLGKIGRGFSSKEPDYY DDYGSLENEDCGDDDLQGRPEQCRLEEYSSLEVTNV hide sequence

Ensembl Acc Id:

ENSRNOP00000019447 ⟸ ENSRNOT00000019447

RefSeq Acc Id:	XP_038966012 ⟸ XM_039110084
- Peptide Label:	isoform X4
- UniProtKB:	A0A0H2UHL8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000088366 ⟸ ENSRNOT00000118606

Ensembl Acc Id:

ENSRNOP00000079377 ⟸ ENSRNOT00000108272

RefSeq Acc Id:	NP_001402874 ⟸ NM_001415945
- Peptide Label:	isoform 1
- UniProtKB:	Q5FWS6 (UniProtKB/Swiss-Prot), A0A0H2UHL8 (UniProtKB/TrEMBL)

Protein Domains

SAM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5FWS6-F1-model_v2	AlphaFold	Q5FWS6	1-780	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359147	AgrOrtholog
BioCyc Gene	G2FUF-39323	BioCyc
Ensembl Genes	ENSRNOG00000014322	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000019447	ENTREZGENE
	ENSRNOT00000019447.7	UniProtKB/Swiss-Prot
	ENSRNOT00000118606	ENTREZGENE
Gene3D-CATH	1.10.150.50	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7320330	IMAGE-MGC_LOAD
InterPro	Kazrin	UniProtKB/Swiss-Prot
	Kazrin_SAM_rpt_1	UniProtKB/Swiss-Prot
	Kazrin_SAM_rpt_2	UniProtKB/Swiss-Prot
	Kazrin_SAM_rpt_3	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	SAM/pointed_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:313672	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105638	IMAGE-MGC_LOAD
NCBI Gene	313672	ENTREZGENE
PANTHER	KAZRIN	UniProtKB/Swiss-Prot
	PTHR12776	UniProtKB/Swiss-Prot
Pfam	SAM_1	UniProtKB/Swiss-Prot
	SAM_2	UniProtKB/Swiss-Prot
PhenoGen	Kazn	PhenoGen
PROSITE	SAM_DOMAIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000014322	RatGTEx
SMART	SAM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47769	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHL8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AAP0	ENTREZGENE, UniProtKB/TrEMBL
	A6ITY6	ENTREZGENE, UniProtKB/TrEMBL
	KAZRN_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-13	Kazn	kazrin, periplakin interacting protein	LOC313672	kazrin	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-19	LOC313672	kazrin	LOC313672	similar to CG11206-PA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	LOC313672	similar to CG11206-PA			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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