Mpzl1 (myelin protein zero-like 1) - Rat Genome Database

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Gene: Mpzl1 (myelin protein zero-like 1) Rattus norvegicus
Analyze
Symbol: Mpzl1
Name: myelin protein zero-like 1
RGD ID: 1359140
Description: Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human MPZL1 (myelin protein zero like 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC93692; myelin protein zero-like protein 1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81380,385,454 - 80,422,315 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1380,385,456 - 80,422,390 (-)EnsemblGRCr8
mRatBN7.21377,852,467 - 77,889,305 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1377,852,467 - 77,896,616 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1380,470,736 - 80,507,456 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01381,774,724 - 81,811,446 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01379,021,768 - 79,058,475 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01383,805,244 - 83,842,074 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1383,805,244 - 83,842,051 (-)Ensemblrn6Rnor6.0
Rnor_5.01388,685,410 - 88,722,238 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41381,321,155 - 81,357,929 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1377,565,342 - 77,602,116 (-)NCBICelera
RGSC_v3.11381,335,342 - 81,372,117 (-)NCBI
Cytogenetic Map13q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetylsalicylic acid  (EXP)
actinomycin D  (ISO)
adenine  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arotinoid acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
butyric acid  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
CHIR 99021  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cortisol  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diethyl maleate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
hydroxyurea  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
ketoconazole  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
mitomycin C  (ISO)
N-nitrosodiethylamine  (EXP)
nickel sulfate  (ISO)
Nutlin-3  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sarin  (ISO)
SB 431542  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
XAV939  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
6. Dissecting the interaction of SHP-2 with PZR, an immunoglobulin family protein containing immunoreceptor tyrosine-based inhibitory motifs. Zhao R and Zhao ZJ, J Biol Chem 2000 Feb 25;275(8):5453-9.
7. Cell surface glycoprotein PZR is a major mediator of concanavalin A-induced cell signaling. Zhao R, etal., J Biol Chem 2002 Mar 8;277(10):7882-8. Epub 2001 Dec 20.
Additional References at PubMed
PMID:15489334   PMID:17440960   PMID:19581412   PMID:21423176  


Genomics

Comparative Map Data
Mpzl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81380,385,454 - 80,422,315 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1380,385,456 - 80,422,390 (-)EnsemblGRCr8
mRatBN7.21377,852,467 - 77,889,305 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1377,852,467 - 77,896,616 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1380,470,736 - 80,507,456 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01381,774,724 - 81,811,446 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01379,021,768 - 79,058,475 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01383,805,244 - 83,842,074 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1383,805,244 - 83,842,051 (-)Ensemblrn6Rnor6.0
Rnor_5.01388,685,410 - 88,722,238 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41381,321,155 - 81,357,929 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1377,565,342 - 77,602,116 (-)NCBICelera
RGSC_v3.11381,335,342 - 81,372,117 (-)NCBI
Cytogenetic Map13q23NCBI
MPZL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381167,721,982 - 167,791,919 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1167,721,192 - 167,791,919 (+)Ensemblhg38GRCh38
GRCh371167,691,219 - 167,761,156 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,957,832 - 166,026,684 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341164,422,865 - 164,491,716NCBI
Celera1140,800,446 - 140,870,412 (+)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1138,937,273 - 139,007,435 (+)NCBIHuRef
CHM1_11169,113,411 - 169,183,386 (+)NCBICHM1_1
T2T-CHM13v2.01167,064,939 - 167,143,403 (+)NCBIT2T-CHM13v2.0
Mpzl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,419,745 - 165,462,144 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1165,419,809 - 165,462,107 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381165,592,176 - 165,634,541 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1165,592,240 - 165,634,538 (-)Ensemblmm10GRCm38
MGSCv371167,522,312 - 167,564,672 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361167,428,915 - 167,471,196 (-)NCBIMGSCv36mm8
Celera1168,036,719 - 168,079,026 (-)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map172.94NCBI
MPZL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2181,974,854 - 82,044,013 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1181,643,316 - 81,711,075 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01143,154,682 - 143,221,780 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,937,540 - 147,004,503 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,937,479 - 147,004,503 (+)EnsemblpanPan2panpan1.1
MPZL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1730,670,506 - 30,741,464 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl730,672,840 - 30,741,484 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha730,209,736 - 30,278,606 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0730,491,188 - 30,560,174 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl730,491,246 - 30,559,831 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1730,331,164 - 30,400,236 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0730,362,246 - 30,431,459 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0730,598,684 - 30,669,887 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mpzl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344100,492,287 - 100,511,980 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648118,338,708 - 18,356,229 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648118,340,269 - 18,358,729 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MPZL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl483,235,714 - 83,316,405 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1483,235,712 - 83,309,620 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2490,911,481 - 90,985,387 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MPZL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12561,248,180 - 61,309,746 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2561,245,562 - 61,309,881 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605562,970,101 - 63,033,207 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mpzl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248265,760,008 - 5,831,641 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248265,760,039 - 5,830,228 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mpzl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11044,704,633 - 44,742,331 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mpzl1
247 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:258
Count of miRNA genes:178
Interacting mature miRNAs:213
Transcripts:ENSRNOT00000004376
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
RH141095  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21377,852,622 - 77,852,826 (+)MAPPERmRatBN7.2
Rnor_6.01383,805,400 - 83,805,603NCBIRnor6.0
Rnor_5.01388,685,566 - 88,685,769UniSTSRnor5.0
RGSC_v3.41381,321,311 - 81,321,514UniSTSRGSC3.4
Celera1377,565,498 - 77,565,701UniSTS
Cytogenetic Map13q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 90 59 6 354 190 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000004376   ⟹   ENSRNOP00000004376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1380,385,456 - 80,422,228 (-)Ensembl
mRatBN7.2 Ensembl1377,852,467 - 77,889,323 (-)Ensembl
Rnor_6.0 Ensembl1383,805,244 - 83,842,051 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093821   ⟹   ENSRNOP00000089948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1380,385,888 - 80,422,228 (-)Ensembl
mRatBN7.2 Ensembl1377,852,467 - 77,896,616 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099714   ⟹   ENSRNOP00000088248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1380,385,456 - 80,422,390 (-)Ensembl
mRatBN7.2 Ensembl1377,852,467 - 77,889,292 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101772   ⟹   ENSRNOP00000084855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1380,386,812 - 80,422,228 (-)Ensembl
mRatBN7.2 Ensembl1377,853,825 - 77,889,323 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113749   ⟹   ENSRNOP00000097312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1380,385,456 - 80,402,010 (-)Ensembl
mRatBN7.2 Ensembl1377,852,467 - 77,869,056 (-)Ensembl
RefSeq Acc Id: NM_001007728   ⟹   NP_001007729
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81380,385,454 - 80,422,228 (-)NCBI
mRatBN7.21377,852,467 - 77,889,245 (-)NCBI
Rnor_6.01383,805,244 - 83,842,018 (-)NCBI
Rnor_5.01388,685,410 - 88,722,238 (-)NCBI
RGSC_v3.41381,321,155 - 81,357,929 (-)RGD
Celera1377,565,342 - 77,602,116 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250180   ⟹   XP_006250242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81380,385,454 - 80,422,315 (-)NCBI
mRatBN7.21377,852,467 - 77,889,305 (-)NCBI
Rnor_6.01383,805,244 - 83,842,074 (-)NCBI
Rnor_5.01388,685,410 - 88,722,238 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001007729   ⟸   NM_001007728
- Peptide Label: precursor
- UniProtKB: Q6AYT8 (UniProtKB/Swiss-Prot),   A6IDH5 (UniProtKB/TrEMBL),   A0A8I6A952 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250242   ⟸   XM_006250180
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000004376   ⟸   ENSRNOT00000004376
Ensembl Acc Id: ENSRNOP00000088248   ⟸   ENSRNOT00000099714
Ensembl Acc Id: ENSRNOP00000084855   ⟸   ENSRNOT00000101772
Ensembl Acc Id: ENSRNOP00000089948   ⟸   ENSRNOT00000093821
Ensembl Acc Id: ENSRNOP00000097312   ⟸   ENSRNOT00000113749
Protein Domains
Ig-like   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYT8-F1-model_v2 AlphaFold Q6AYT8 1-270 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698961
Promoter ID:EPDNEW_R9486
Type:initiation region
Name:Mpzl1_1
Description:myelin protein zero-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01383,842,054 - 83,842,114EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359140 AgrOrtholog
BioCyc Gene G2FUF-17566 BioCyc
Ensembl Genes ENSRNOG00000003248 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000004376 ENTREZGENE
  ENSRNOT00000004376.6 UniProtKB/Swiss-Prot
  ENSRNOT00000093821 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7096438 IMAGE-MGC_LOAD
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_V-set UniProtKB/Swiss-Prot
  Myelin_P0-rel UniProtKB/Swiss-Prot
KEGG Report rno:360871 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93692 IMAGE-MGC_LOAD
NCBI Gene 360871 ENTREZGENE
PANTHER PTHR13869 UniProtKB/Swiss-Prot
  PTHR13869:SF19 UniProtKB/Swiss-Prot
Pfam V-set UniProtKB/Swiss-Prot
PhenoGen Mpzl1 PhenoGen
PRINTS MYELINP0 UniProtKB/Swiss-Prot
PROSITE IG_LIKE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003248 RatGTEx
SMART IGv UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt A0A8I5ZYX9_RAT UniProtKB/TrEMBL
  A0A8I6A952 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9E7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ASF7_RAT UniProtKB/TrEMBL
  A6IDH4_RAT UniProtKB/TrEMBL
  A6IDH5 ENTREZGENE, UniProtKB/TrEMBL
  A6IDH6 ENTREZGENE, UniProtKB/TrEMBL
  A6IDH7 ENTREZGENE, UniProtKB/TrEMBL
  MPZL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-29 Mpzl1  myelin protein zero-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL