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Gene: Vezt (vezatin, adherens junctions transmembrane protein) Rattus norvegicus

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Symbol:

Vezt

Name:

vezatin, adherens junctions transmembrane protein

RGD ID:

1359117

Description:

Predicted to enable myosin binding activity. Predicted to be involved in cell-cell adhesion and synapse maturation. Predicted to act upstream of or within chordate embryonic development. Predicted to be located in nucleus. Predicted to be part of stereocilia ankle link complex. Predicted to be active in glutamatergic synapse; plasma membrane; and postsynapse. Orthologous to human VEZT (vezatin, adherens junctions transmembrane protein); INTERACTS WITH 2,6-dinitrotoluene; acrylamide; carbonyl sulfide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC94969; transmembrane protein vezatin; vezatin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	30,399,208 - 30,484,429 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	30,421,243 - 30,484,347 (-)	Ensembl				GRCr8
mRatBN7.2	7	28,512,214 - 28,597,429 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	28,534,249 - 28,597,356 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	30,523,904 - 30,595,207 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	32,686,151 - 32,757,454 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	32,464,268 - 32,527,945 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	34,888,487 - 34,951,712 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	34,888,491 - 34,951,644 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	34,946,142 - 35,009,809 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	31,096,615 - 31,159,787 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	25,627,720 - 25,690,723 (-)	NCBI		Celera
RGSC_v3.1	7	31,116,887 - 31,180,058 (-)	NCBI
Cytogenetic Map	7	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-nitrophenol (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bortezomib (ISO)

carbonyl sulfide (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

formaldehyde (ISO)

ozone (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-cell adhesion (IBA,IEA,ISO)

chordate embryonic development (ISO)

synapse maturation (ISO)

Cellular Component

acrosomal vesicle (IEA)

adherens junction (IEA)

cytoplasmic vesicle (IEA)

glutamatergic synapse (ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

plasma membrane (IBA,IEA,ISO)

postsynapse (ISO)

stereocilia ankle link complex (ISO,ISS)

stereocilium membrane (IEA)

Molecular Function

myosin binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Vezatin, a novel transmembrane protein, bridges myosin VIIA to the cadherin-catenins complex.	Kussel-Andermann P, etal., EMBO J 2000 Nov 15;19(22):6020-9.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:16199027	PMID:17567809

Genomics

Comparative Map Data

Vezt
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	30,399,208 - 30,484,429 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	30,421,243 - 30,484,347 (-)	Ensembl				GRCr8
mRatBN7.2	7	28,512,214 - 28,597,429 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	28,534,249 - 28,597,356 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	30,523,904 - 30,595,207 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	32,686,151 - 32,757,454 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	32,464,268 - 32,527,945 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	34,888,487 - 34,951,712 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	34,888,491 - 34,951,644 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	34,946,142 - 35,009,809 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	31,096,615 - 31,159,787 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	25,627,720 - 25,690,723 (-)	NCBI		Celera
RGSC_v3.1	7	31,116,887 - 31,180,058 (-)	NCBI
Cytogenetic Map	7	q13	NCBI

VEZT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	95,217,807 - 95,302,799 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	95,217,746 - 95,302,799 (+)	Ensembl			hg38	GRCh38
GRCh37	12	95,611,583 - 95,696,575 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	94,135,653 - 94,220,697 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	95,282,459 - 95,367,461 (+)	NCBI		Celera
Cytogenetic Map	12	q22	NCBI
HuRef	12	92,680,071 - 92,764,871 (+)	NCBI		HuRef
CHM1_1	12	95,577,045 - 95,662,018 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	95,198,602 - 95,283,569 (+)	NCBI		T2T-CHM13v2.0

Vezt
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	93,797,384 - 93,871,661 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	93,775,027 - 93,871,679 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	93,961,522 - 94,035,799 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	93,939,165 - 94,035,817 (-)	Ensembl			mm10	GRCm38
MGSCv37	10	93,430,845 - 93,498,493 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	93,397,899 - 93,465,547 (-)	NCBI		MGSCv36	mm8
Celera	10	95,942,273 - 96,009,945 (-)	NCBI		Celera
Cytogenetic Map	10	C2	NCBI

Vezt
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	31,801,979 - 31,867,693 (+)	Ensembl
ChiLan1.0	NW_004955405	31,801,946 - 31,869,588 (+)	NCBI	ChiLan1.0	ChiLan1.0

VEZT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	103,290,683 - 103,373,557 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	103,287,038 - 103,371,478 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	92,809,279 - 92,893,527 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	96,203,543 - 96,287,046 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	96,203,543 - 96,287,046 (+)	Ensembl			panPan2	panpan1.1

VEZT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	35,162,734 - 35,232,689 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	35,162,833 - 35,228,040 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	35,549,421 - 35,617,480 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	35,827,134 - 35,900,837 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	35,827,144 - 35,897,273 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	35,100,370 - 35,168,435 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	35,195,245 - 35,263,216 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	35,458,034 - 35,525,824 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Vezt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	24,719,785 - 24,796,647 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936507	11,438,901 - 11,515,151 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936507	11,438,790 - 11,518,021 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VEZT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	88,031,979 - 88,104,742 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	88,000,027 - 88,104,768 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	92,199,802 - 92,302,330 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VEZT
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	90,622,655 - 90,708,046 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	154,462,342 - 154,545,044 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vezt
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	11,808,192 - 11,868,985 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624750	11,808,192 - 11,869,019 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Vezt
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	173,067,264 - 173,130,235 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Vezt
881 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	334
Count of miRNA genes:	199
Interacting mature miRNAs:	238
Transcripts:	ENSRNOT00000030015
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	21541977	51639954	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	21541977	51639954	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	21541977	35707405	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	28624575	65788017	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
61369	Mcs2	Mammary carcinoma susceptibility QTL 2	3.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	20920494	37412865	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

RH134549

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	28,534,402 - 28,534,616 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	34,888,645 - 34,888,858	NCBI	Rnor6.0
Rnor_5.0	7	34,946,300 - 34,946,513	UniSTS	Rnor5.0
RGSC_v3.4	7	31,096,773 - 31,096,986	UniSTS	RGSC3.4
Celera	7	25,627,878 - 25,628,091	UniSTS
RH 3.4 Map	7	194.2	UniSTS
Cytogenetic Map	7	q13	UniSTS

BF399551

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	28,535,408 - 28,535,610 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	34,889,651 - 34,889,852	NCBI	Rnor6.0
Rnor_5.0	7	34,947,306 - 34,947,507	UniSTS	Rnor5.0
RGSC_v3.4	7	31,097,779 - 31,097,980	UniSTS	RGSC3.4
Celera	7	25,628,884 - 25,629,085	UniSTS
RH 3.4 Map	7	195.4	UniSTS
Cytogenetic Map	7	q13	UniSTS

BE118041

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	28,548,210 - 28,548,392 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	34,902,451 - 34,902,632	NCBI	Rnor6.0
Rnor_5.0	7	34,960,106 - 34,960,287	UniSTS	Rnor5.0
RGSC_v3.4	7	31,110,579 - 31,110,760	UniSTS	RGSC3.4
Celera	7	25,641,680 - 25,641,861	UniSTS
RH 3.4 Map	7	194.8	UniSTS
Cytogenetic Map	7	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001006984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC105868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000030015 ⟹ ENSRNOP00000038458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	30,421,243 - 30,484,347 (-)	Ensembl
mRatBN7.2 Ensembl	7	28,534,249 - 28,597,356 (-)	Ensembl
Rnor_6.0 Ensembl	7	34,888,491 - 34,951,644 (-)	Ensembl

RefSeq Acc Id:

NM_001006984 ⟹ NP_001006985

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	30,421,239 - 30,484,366 (-)	NCBI
mRatBN7.2	7	28,534,245 - 28,597,375 (-)	NCBI
Rnor_6.0	7	34,888,487 - 34,951,644 (-)	NCBI
Rnor_5.0	7	34,946,142 - 35,009,809 (-)	NCBI
RGSC_v3.4	7	31,096,615 - 31,159,787 (-)	RGD
Celera	7	25,627,720 - 25,690,723 (-)	RGD

Sequence:

show sequence

CGCCTGCCCTCCTGCCTTCATTTCCCATCGTGCTGAGGCGGGTGGTATGGCGGAGAAGGATGAC
ACCGGAGTTTGACGAAGAGGTGGTTTTTGAGAATTCTCCACTTTACCAGTACCTACAGGATTTG
GGACACACAGATTTTGAAATATGTTCTTCTTTGTCACCAAAAACAGAAACATGCTTGACAACAG
AGGAACCTCAGACGCCTCCCACCAGAGTCCTACAGAAACAAGGCATCCTGTTGAAACTGACAGA
AACCATCAAGAGTTGGACTCTTTCCTCTCAGTACAGTAAGAAAGATGACTTACTCCACAAGCTG
GACACCGGGTTTCGACTGGACGCACTGGACGCCATCCTGCAACAGGAAGTCCTGCTCCAAGAGG
ATGTGGAGCTGATTGAGCTGCTTGATCCCAGCATCCTGTCTGCAGGGCACCCGCAACAGGAAAA
TGGACACCTTCCAACACTCTGCTCCCTGGCAACCCCTAACATTTGGGATGTCTCCATGCTGTTT
GCCTTCATTAGTCTGCTCATCATGCTTCCCACGTGGTGGATTGTGTCTTCCTGGCTGGTATGGG
GAATAATTCTATTTCTTTACTTGATCATACGAGTCTTGAAATTCTGGAGGACAGCCAAACTGCA
AATGACTCTGAAAAAATACAGGGTCCGTTTGGAAGACATGGCAGCCAATAGCCGAGCCTTCACC
AACCTTGTGAGAAAGTCGCTCCGTCTCATCCAAGAAACCGAAGTCATTTCCAGGGGATTTACTC
TTTTGCTTGACAGGGTCAGTGCTGCTTGCTCATTTAATAAGGCTGCACAGCATCCCAGCCAGCA
TCTCATCGGCCTTCGGAAAGCCGTCTACAGGACCGTACGAGCCAACTTTCAAGCCGCAAGGCTA
GCTACCCTGTACATGCTGAAAAACTACCCCCTGAACTCTGAGAGTGACAATGTCACCAACTACA
TCTGTGTGGTACCTTTTAAGGAGCTGGGGCTCGGACTCAGTGAAGACCAGATATCAGAAGAGGA
AGCCCGGAACCTGACGGATGGCTTCAGCCTGCCAGCCTTGAAGGTTTTGTTCCAACTCTGGGTG
GCACAGAGTTCAGAGTTCTTCAGACGCCTAGCTCTGCTACTTTCCACAGCAAATTCGCCTTCTG
GGCCCTTACTGACTGCTGCACTCTTGCCTCATCGTATTCTCTCTGATGTGACTCAAGGTCTACC
TCATGCTCACACTGCCTGCTTGGACGAGCTAAAGCGCAGCTATGAGTTCTTTCGGTACTTTGAA
ACTCAGCACCAGTCAGTCCCTCAGCGCTTACCCAAAACCCAGCCGAAGTGGAGAGAGCTGAACA
ACGTCCACACGGCAGTGCGCAGCTTACAGCTCCATCTGAAAGCGCTGCTGAATGAAGTAATAAT
TCTTGAAGATGAACTTGAGAAGCTCGTTTGTACTAAAGAAACCCAAGAGCTGCTGTCAGAGGCT
TATCCAGTCCTAGAGCAGAGATTAAAGCTAATCGAGCCACATGTTCAGGCCAGCAACAGCTGCT
GGGAAGAAGCCATCTCCCAAGTGGACAGACTGCTCCGGAGGAATACAGATCAAAAAGGCAAGCC
TGGAGTAGCGTGTGAGAACCCACACTGCACCGCGGCGCCCTTGTTGCGGCCGACGCTACACATT
GAGGACAGAGACCCCATCCCTGAGGAGCAGGAATTAGAAGCTTATGTGGATGGCATAGACATAG
AAAGTGAGTTCCGAAAGGACAGTTTGTATCACGTGTCGCAGGAAGACAGAGAGAGACAGAAGCG
TGAGCAGGAGGAGTCCAAGAGGGTGCTGCAGGAGCTAAAGTCTGTGCTGGGATTTAAAGCTTCA
GAGGCCGAAAGGCAGAAATGGAAGCAACTTCTGTTCAGTGACCACGCTGTGTTGAAATCCTTGT
CTCCTGTAGAGCCAGTGGAATCTGTAAGTAACTCAGAGACACCCATGAATTCAGATACAGAACA
GGCCCATAGCGAGGCTACAGAAGAGGAGACTAGTAAGCCCTGTGCGAGCGACAAGGAAGACACT
AGGACTGAGTATATGTGTGATGGCCCTCCAAAGGGGCAGAGCAAAGACACCTCTGGAGACCAAG
GCCACCTCCTCCAAGGAGCCCACCAGTGTGAGAGCGAGGCCAAGCCTCCTCAGGCTGCTGCTGC
AGGGGCCACCGCCCCTCCAACTCCCAGGGACTCACCCCGGCTCTCCATTAAGCAGAGGCTGGCT
CGACTCCAGTTGTCACCAGAATACACCTTCACTGCTGGCCTGGCTGCGGAAGTGGCCGCCAGGT
CTCTGTCCTTTACCACCATGCAGGAACAGACTTTTGGCGACGAGGAGGACGAGGACAAAGAACA
GCTAGTTGAAGGAGGTGAAAGGGAGCTGGAGGAAAAATAAAAGCCAAGATGAAGTGATTGTCTT
GATTGTTCCTTTTACAAAAGTGTTCGAGCTGCAAGACTGGGGAGGGAAATGAGTGCGTGTTTAC
TCTCTAGAAAGCTGCGGCGTGAAGTTACAGGGTGAATACTGATTTGAAAACCTGACCTGAAATG
AATAGATTCCTGTCTAGGCAGATCTTTTAGGCATAGGAGAGAAAGGTAAGGGCAGTTCTATTTG
TGGCAAAACTGATAATCTTGGCAAATCTTTAAGTACTTTTTTATAAGAAATGAGTTTATCATTT
TTTGCCAAAACTTTGCTGCCATGAGGTAATGAGGATGAGTCTTGCAGAGCCTAAACCTTTAGAA
TGAGCCCTTTCTACTGTGTCCTTGCGGTGTGTAACTGCAGCGGTCATGTTAATACATTGTTCGT
ATTTTATTTTGTTTATACCGCTCTTAAAAAAGATACAGGTTCTAAATAAAATATTTAATTACTA
CAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017594734 ⟹ XP_017450223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	30,421,696 - 30,484,429 (-)	NCBI
mRatBN7.2	7	28,534,245 - 28,597,429 (-)	NCBI
Rnor_6.0	7	34,888,487 - 34,951,712 (-)	NCBI

Sequence:

show sequence

TCGCGACGCATGCCGGGAGTTGTAGTTTTCGGTGCCCCTGAGGTGGGCAGGAGCCGAAGCCTGG
GTGCCGCCTGCCCTCCTGCCTTCATTTCCCATCGTGCTGAGGCGGGTGGTATGGCGGAGAAGGA
TGACACCGGAGTTTGACGAAGAGGTGGTTTTTGAGAATTCTCCACTTTACCAGTACCTACAGGA
TTTGGGACACACAGATTTTGAAATATGTTCTTCTTTGTCACCAAAAACAGAAACATGCTTGACA
ACAGAGGAACCTCAGACGCCTCCCACCAGAGTCCTACAGAAACAAGGCATCCTGTTGAAACTGA
CAGAAACCATCAAGAGTTGGACTCTTTCCTCTCAGTACAGTAAGAAAGATGACTTACTCCACAA
GCTGGACACCGGGTTTCGACTGGACGCACTGGACGCCATCCTGCAACAGGAAGTCCTGCTCCAA
GAGGATGTGGAGCTGATTGAGCTGCTTGATCCCAGCATCCTGTCTGCAGGGCACCCGCAACAGG
AAAATGGACACCTTCCAACACTCTGCTCCCTGGCAACCCCTAACATTTGGGATGTCTCCATGCT
GTTTGCCTTCATTAGTCTGCTCATCATGCTTCCCACGTGGTGGATTGTGTCTTCCTGGCTGGTA
TGGGGAATAATTCTATTTCTTTACTTGATCATACGAGTCTTGAAATTCTGGAGGACAGCCAAAC
TGCAAATGACTCTGAAAAAATACAGGGTCCGTTTGGAAGACATGGCAGCCAATAGCCGAGCCTT
CACCAACCTTGTGAGAAAGTCGCTCCGTCTCATCCAAGAAACCGAAGTCATTTCCAGGGGATTT
ACTCTGGTCAGTGCTGCTTGCTCATTTAATAAGGCTGCACAGCATCCCAGCCAGCATCTCATCG
GCCTTCGGAAAGCCGTCTACAGGACCGTACGAGCCAACTTTCAAGCCGCAAGGCTAGCTACCCT
GTACATGCTGAAAAACTACCCCCTGAACTCTGAGAGTGACAATGTCACCAACTACATCTGTGTG
GTACCTTTTAAGGAGCTGGGGCTCGGACTCAGTGAAGACCAGATATCAGAAGAGGAAGCCCGGA
ACCTGACGGATGGCTTCAGCCTGCCAGCCTTGAAGGTTTTGTTCCAACTCTGGGTGGCACAGAG
TTCAGAGTTCTTCAGACGCCTAGCTCTGCTACTTTCCACAGCAAATTCGCCTTCTGGGCCCTTA
CTGACTGCTGCACTCTTGCCTCATCGTATTCTCTCTGATGTGACTCAAGGTCTACCTCATGCTC
ACACTGCCTGCTTGGACGAGCTAAAGCGCAGCTATGAGTTCTTTCGGTACTTTGAAACTCAGCA
CCAGTCAGTCCCTCAGCGCTTACCCAAAACCCAGCCGAAGTGGAGAGAGCTGAACAACGTCCAC
ACGGCAGTGCGCAGCTTACAGCTCCATCTGAAAGCGCTGCTGAATGAAGTAATAATTCTTGAAG
ATGAACTTGAGAAGCTCGTTTGTACTAAAGAAACCCAAGAGCTGCTGTCAGAGGCTTATCCAGT
CCTAGAGCAGAGATTAAAGCTAATCGAGCCACATGTTCAGGCCAGCAACAGCTGCTGGGAAGAA
GCCATCTCCCAAGTGGACAGACTGCTCCGGAGGAATACAGATCAAAAAGGCAAGCCTGGAGTAG
CGTGTGAGAACCCACACTGCACCGCGGCGCCCTTGTTGCGGCCGACGCTACACATTGAGGACAG
AGACCCCATCCCTGAGGAGCAGGAATTAGAAGCTTATGTGGATGGCATAGACATAGAAAGTGAG
TTCCGAAAGGACAGTTTGTATCACGTGTCGCAGGAAGACAGAGAGAGACAGAAGCGTGAGCAGG
AGGAGTCCAAGAGGGTGCTGCAGGAGCTAAAGTCTGTGCTGGGATTTAAAGCTTCAGAGGCCGA
AAGGCAGAAATGGAAGCAACTTCTGTTCAGTGACCACGGGGTAAAGTCCGAGTGGAATTAGAGA
GGGACGGCCTCCGCTGGACCTGCTGTGGCCATGTTCTATTGTCGCTGCTTCCGTAGTGCAGTTA
CCGCAGCATAGGCATGTGTCTTGGAGACGGACGCGTCTTACAAAATGCTTTTTAAGTGTACGCC
AGACCTTCAAGACGCACTCTTTTCCCTCCGTCCTGCTTCATGATCTGTTGTATTGTACTAACCC
TCATGCTGGGAGGCGAGACCACCTAGCGAGCAACCCACTGCCTACTAACACCGAGAGGGGCTAA
CTAAGCTTGATTTTTCCTGCAAGGACAACTTCTACTGTACGGATCGATATTCTGTCTGTGTTAT
ACTTTGTTTGGTACTTGGTCTCCAATGCCGATTTGATTCCATCCGTGTTCTGTATAGGACTACA
AATGTAGACATACGCTCTACGTCCACCAGGTTCTGTTAGGTGATCGGCAAGGTGAACTATGTTA
CATTGCTTATGCTGCTTTACCTTGTGAATATATATGTGTGTATATTTGATGAAGATGCGTTTGT
GTGGGTCACTTTAGGCCCAGGCTTTAGTGAGCATCAGAACCAAGTGGGATGGCTCGTAAACACA
CCCACCCCCACCCAGTCTCCCGTTCTGCCTGTGGTCAGACTCTAGCATCTGCCTCCAGCAGCCT
CCTAGGGGTTAACTGGGCCTGCTGATTCAGGGACCGTGCTTGGAGAAGCACTGCCTTTGAACTG
CAGACTCCCCAGCAACTCCCATCTCATCTCGTCAGGTATTCTGTCTCATAAAACTCCCCATATG
TATAAAGTTACATTTATTTTACTAGAAAATTTTATTAAGTTTTTATTTATTTGTTGCTCCTTTT
TAAAAAAAAAAGCGACTGGGAATTTTAAAGTTGTTGGGCCCTTAGTTATTTTTTTTCTTTTTTC
TTTTCTTTTCCTCCTTGTGTTCTTTGAAGCTGTGTTGAAATCCTTGTCTCCTGTAGAGCCAGTG
GAATCTGTAAGTAACTCAGAGACACCCATGAATTCAGATACAGAACAGGCCCATAGCGAGGCTA
CAGAAGAGGAGACTAGTAAGCCCTGTGCGAGCGACAAGGAAGACACTAGGACTGAGTATATGTG
TGATGGCCCTCCAAAGGGGCAGAGCAAAGACACCTCTGGAGACCAAGGCCACCTCCTCCAAGGA
GCCCACCAGTGTGAGAGCGAGGCCAAGCCTCCTCAGGCTGCTGCTGCAGGGGCCACCGCCCCTC
CAACTCCCAGGGACTCACCCCGGCTCTCCATTAAGCAGAGGCTGGCTCGACTCCAGTTGTCACC
AGAATACACCTTCACTGCTGGCCTGGCTGCGGAAGTGGCCGCCAGGTCTCTGTCCTTTACCACC
ATGCAGGAACAGACTTTTGGCGACGAGGAGGACGAGGACAAAGAACAGCTAGTTGAAGGAGGTG
AAAGGGAGCTGGAGGAAAAATAAAAGCCAAGATGAAGTGATTGTCTTGATTGTTCCTTTTACAA
AAGTGTTCGAGCTGCAAGACTGGGGAGGGAAATGAGTGCGTGTTTACTCTCTAGAAAGCTGCGG
CGTGAAGTTACAGGGTGAATACTGATTTGAAAACCTGACCTGAAATGAATAGATTCCTGTCTAG
GCAGATCTTTTAGGCATAGGAGAGAAAGGTAAGGGCAGTTCTATTTGTGGCAAAACTGATAATC
TTGGCAAATCTTTAAGTACTTTTTTATAAGAAATGAGTTTATCATTTTTTGCCAAAACTTTGCT
GCCATGAGGTAATGAGGATGAGTCTTGCAGAGCCTAAACCTTTAGAATGAGCCCTTTCTACTGT
GTCCTTGCGGTGTGTAACTGCAGCGGTCATGTTAATACATTGTTCGTATTTTATTTTGTTTATA
CCGCTCTTAAAAAAGATACAGGTTCTAAATAAAATATTTAATTACTACAA

hide sequence

RefSeq Acc Id:

XM_039078694 ⟹ XP_038934622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	30,421,696 - 30,484,429 (-)	NCBI
mRatBN7.2	7	28,534,245 - 28,597,429 (-)	NCBI

RefSeq Acc Id:

XM_039078696 ⟹ XP_038934624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	30,421,696 - 30,484,429 (-)	NCBI
mRatBN7.2	7	28,535,320 - 28,597,429 (-)	NCBI

RefSeq Acc Id:

XM_039078697 ⟹ XP_038934625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	30,421,696 - 30,455,402 (-)	NCBI
mRatBN7.2	7	28,534,245 - 28,571,376 (-)	NCBI

RefSeq Acc Id:

XM_063263202 ⟹ XP_063119272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	30,421,696 - 30,455,402 (-)	NCBI

RefSeq Acc Id:

XM_063263203 ⟹ XP_063119273

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	30,421,696 - 30,458,314 (-)	NCBI

RefSeq Acc Id:

XR_005486572

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	30,399,208 - 30,484,429 (-)	NCBI
mRatBN7.2	7	28,512,214 - 28,597,429 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001006985	(Get FASTA)	NCBI Sequence Viewer
	XP_017450223	(Get FASTA)	NCBI Sequence Viewer
	XP_038934622	(Get FASTA)	NCBI Sequence Viewer
	XP_038934624	(Get FASTA)	NCBI Sequence Viewer
	XP_038934625	(Get FASTA)	NCBI Sequence Viewer
	XP_063119272	(Get FASTA)	NCBI Sequence Viewer
	XP_063119273	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83840	(Get FASTA)	NCBI Sequence Viewer
	EDM16893	(Get FASTA)	NCBI Sequence Viewer
	EDM16894	(Get FASTA)	NCBI Sequence Viewer
	EDM16895	(Get FASTA)	NCBI Sequence Viewer
	EDM16896	(Get FASTA)	NCBI Sequence Viewer
	EDM16897	(Get FASTA)	NCBI Sequence Viewer
	EDM16898	(Get FASTA)	NCBI Sequence Viewer
	EDM16899	(Get FASTA)	NCBI Sequence Viewer
	EDM16900	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038458
GenBank Protein	Q5XI52	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001006985 ⟸ NM_001006984

- UniProtKB:

Q5XI52 (UniProtKB/Swiss-Prot), A6IFZ9 (UniProtKB/TrEMBL), A6IG00 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTPEFDEEVVFENSPLYQYLQDLGHTDFEICSSLSPKTETCLTTEEPQTPPTRVLQKQGILLKL
TETIKSWTLSSQYSKKDDLLHKLDTGFRLDALDAILQQEVLLQEDVELIELLDPSILSAGHPQQ
ENGHLPTLCSLATPNIWDVSMLFAFISLLIMLPTWWIVSSWLVWGIILFLYLIIRVLKFWRTAK
LQMTLKKYRVRLEDMAANSRAFTNLVRKSLRLIQETEVISRGFTLLLDRVSAACSFNKAAQHPS
QHLIGLRKAVYRTVRANFQAARLATLYMLKNYPLNSESDNVTNYICVVPFKELGLGLSEDQISE
EEARNLTDGFSLPALKVLFQLWVAQSSEFFRRLALLLSTANSPSGPLLTAALLPHRILSDVTQG
LPHAHTACLDELKRSYEFFRYFETQHQSVPQRLPKTQPKWRELNNVHTAVRSLQLHLKALLNEV
IILEDELEKLVCTKETQELLSEAYPVLEQRLKLIEPHVQASNSCWEEAISQVDRLLRRNTDQKG
KPGVACENPHCTAAPLLRPTLHIEDRDPIPEEQELEAYVDGIDIESEFRKDSLYHVSQEDRERQ
KREQEESKRVLQELKSVLGFKASEAERQKWKQLLFSDHAVLKSLSPVEPVESVSNSETPMNSDT
EQAHSEATEEETSKPCASDKEDTRTEYMCDGPPKGQSKDTSGDQGHLLQGAHQCESEAKPPQAA
AAGATAPPTPRDSPRLSIKQRLARLQLSPEYTFTAGLAAEVAARSLSFTTMQEQTFGDEEDEDK
EQLVEGGERELEEK

hide sequence

RefSeq Acc Id:	XP_017450223 ⟸ XM_017594734
- Peptide Label:	isoform X5
- UniProtKB:	A0A8L2QL87 (UniProtKB/TrEMBL), A6IFZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTPEFDEEVVFENSPLYQYLQDLGHTDFEICSSLSPKTETCLTTEEPQTPPTRVLQKQGILLKL TETIKSWTLSSQYSKKDDLLHKLDTGFRLDALDAILQQEVLLQEDVELIELLDPSILSAGHPQQ ENGHLPTLCSLATPNIWDVSMLFAFISLLIMLPTWWIVSSWLVWGIILFLYLIIRVLKFWRTAK LQMTLKKYRVRLEDMAANSRAFTNLVRKSLRLIQETEVISRGFTLVSAACSFNKAAQHPSQHLI GLRKAVYRTVRANFQAARLATLYMLKNYPLNSESDNVTNYICVVPFKELGLGLSEDQISEEEAR NLTDGFSLPALKVLFQLWVAQSSEFFRRLALLLSTANSPSGPLLTAALLPHRILSDVTQGLPHA HTACLDELKRSYEFFRYFETQHQSVPQRLPKTQPKWRELNNVHTAVRSLQLHLKALLNEVIILE DELEKLVCTKETQELLSEAYPVLEQRLKLIEPHVQASNSCWEEAISQVDRLLRRNTDQKGKPGV ACENPHCTAAPLLRPTLHIEDRDPIPEEQELEAYVDGIDIESEFRKDSLYHVSQEDRERQKREQ EESKRVLQELKSVLGFKASEAERQKWKQLLFSDHGVKSEWN hide sequence

Ensembl Acc Id:

ENSRNOP00000038458 ⟸ ENSRNOT00000030015

RefSeq Acc Id:	XP_038934622 ⟸ XM_039078694
- Peptide Label:	isoform X1
- UniProtKB:	A6IG00 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934625 ⟸ XM_039078697
- Peptide Label:	isoform X4
- UniProtKB:	A6IG01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934624 ⟸ XM_039078696
- Peptide Label:	isoform X3
- UniProtKB:	A6IFZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119273 ⟸ XM_063263203
- Peptide Label:	isoform X6
- UniProtKB:	A6IG00 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119272 ⟸ XM_063263202
- Peptide Label:	isoform X2
- UniProtKB:	A6IG01 (UniProtKB/TrEMBL)

Protein Domains

Myosin-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XI52-F1-model_v2	AlphaFold	Q5XI52	1-782	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695151

Promoter ID:

EPDNEW_R5676

Type:

initiation region

Name:

Vezt_1

Description:

vezatin, adherens junctions transmembrane protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	34,951,629 - 34,951,689	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359117	AgrOrtholog
BioCyc Gene	G2FUF-34380	BioCyc
Ensembl Genes	ENSRNOG00000006514	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000030015	ENTREZGENE
IMAGE_CLONE	IMAGE:7114280	IMAGE-MGC_LOAD
InterPro	Myosin-bd	UniProtKB/Swiss-Prot
	Vezatin	UniProtKB/Swiss-Prot
KEGG Report	rno:299738	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94969	IMAGE-MGC_LOAD
NCBI Gene	299738	ENTREZGENE
PANTHER	PTHR15989	UniProtKB/Swiss-Prot
	VEZATIN	UniProtKB/Swiss-Prot
Pfam	Vezatin	UniProtKB/Swiss-Prot
PhenoGen	Vezt	PhenoGen
RatGTEx	ENSRNOG00000006514	RatGTEx
UniProt	A0A8L2QL87	ENTREZGENE, UniProtKB/TrEMBL
	A6IFZ8	ENTREZGENE, UniProtKB/TrEMBL
	A6IFZ9	ENTREZGENE, UniProtKB/TrEMBL
	A6IG00	ENTREZGENE, UniProtKB/TrEMBL
	A6IG01	ENTREZGENE, UniProtKB/TrEMBL
	A6IG02_RAT	UniProtKB/TrEMBL
	A6IG04_RAT	UniProtKB/TrEMBL
	A6IG05_RAT	UniProtKB/TrEMBL
	Q5XI52	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Vezt	vezatin, adherens junctions transmembrane protein	MGC94969	transmembrane protein vezatin	Symbol and Name updated	1299863	APPROVED
2005-07-29	MGC94969	transmembrane protein vezatin			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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