RGD1359108 (similar to RIKEN cDNA 3110043O21) - Rat Genome Database

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Gene: RGD1359108 (similar to RIKEN cDNA 3110043O21) Rattus norvegicus
Analyze
Symbol: RGD1359108
Name: similar to RIKEN cDNA 3110043O21
RGD ID: 1359108
Description: Predicted to enable GTPase activator activity; guanyl-nucleotide exchange factor activity; and small GTPase binding activity. Predicted to be involved in several processes, including autophagosome-lysosome fusion; axon extension; and stress granule assembly. Predicted to be located in several cellular components, including axon; cytoplasmic ribonucleoprotein granule; and perikaryon. Predicted to be part of Atg1/ULK1 kinase complex and guanyl-nucleotide exchange factor complex. Predicted to be active in several cellular components, including autophagosome; hippocampal mossy fiber to CA3 synapse; and presynaptic cytosol. Human ortholog(s) of this gene implicated in frontotemporal dementia and/or amyotrophic lateral sclerosis 1. Orthologous to human C9orf72 (C9orf72-SMCR8 complex subunit); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C9orf72; guanine nucleotide exchange C9orf72 homolog; guanine nucleotide exchange factor C9orf72 homolog; hypothetical protein LOC313155; MGC93924; protein C9orf72 homolog; similar to RIKEN cDNA 3110043O21 gene; uncharacterized protein C9orf72 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8554,562,570 - 54,587,649 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl554,562,570 - 54,587,637 (-)EnsemblGRCr8
mRatBN7.2549,766,340 - 49,791,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl549,766,325 - 49,791,408 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx551,959,515 - 51,984,642 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0553,559,771 - 53,584,898 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0553,461,625 - 53,486,752 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0550,666,444 - 50,691,523 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl550,668,040 - 50,684,409 (-)Ensemblrn6Rnor6.0
Rnor_5.0555,229,460 - 55,254,965 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4551,839,724 - 51,865,205 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera548,510,000 - 48,535,299 (-)NCBICelera
RGSC_v3.1551,839,902 - 51,865,384 (-)NCBI
Cytogenetic Map5q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Atg1/ULK1 kinase complex  (IEA,ISO,ISS)
autolysosome  (IEA)
autophagosome  (IBA,IEA,ISO,ISS)
axon  (IEA)
axonal growth cone  (IEA,ISO,ISS)
cytoplasm  (IEA,ISO,ISS)
cytoplasmic stress granule  (IEA,ISO,ISS)
cytoplasmic vesicle  (IEA)
cytosol  (IEA,ISO,ISS)
dendrite  (ISO,ISS)
endosome  (IBA,IEA,ISO,ISS)
extracellular region  (IEA)
extracellular space  (IEA,ISO,ISS)
glutamatergic synapse  (IEA,ISO)
growth cone  (IEA)
guanyl-nucleotide exchange factor complex  (IEA,ISO)
hippocampal mossy fiber to CA3 synapse  (IEA,ISO)
lysosome  (IEA,ISO,ISS)
main axon  (IEA,ISO,ISS)
neuron projection  (IEA,ISO,ISS)
nuclear membrane  (ISO)
nucleus  (IEA,ISO,ISS)
P-body  (IEA,ISO,ISS)
perikaryon  (IEA,ISO,ISS)
postsynapse  (IEA,ISO,ISS)
presynapse  (IEA,ISO,ISS)
presynaptic cytosol  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:24549040   PMID:26174152   PMID:26408000   PMID:26989253   PMID:27037575   PMID:27103069   PMID:27193190   PMID:27334615   PMID:27476503   PMID:27559131   PMID:27617292  
PMID:27723745   PMID:27875531   PMID:29398115   PMID:32745320   PMID:35451425   PMID:36438488  


Genomics

Comparative Map Data
RGD1359108
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8554,562,570 - 54,587,649 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl554,562,570 - 54,587,637 (-)EnsemblGRCr8
mRatBN7.2549,766,340 - 49,791,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl549,766,325 - 49,791,408 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx551,959,515 - 51,984,642 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0553,559,771 - 53,584,898 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0553,461,625 - 53,486,752 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0550,666,444 - 50,691,523 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl550,668,040 - 50,684,409 (-)Ensemblrn6Rnor6.0
Rnor_5.0555,229,460 - 55,254,965 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4551,839,724 - 51,865,205 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera548,510,000 - 48,535,299 (-)NCBICelera
RGSC_v3.1551,839,902 - 51,865,384 (-)NCBI
Cytogenetic Map5q21NCBI
C9orf72
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38927,546,546 - 27,573,866 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl927,535,640 - 27,573,895 (-)Ensemblhg38GRCh38
GRCh37927,546,544 - 27,573,864 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36927,536,544 - 27,563,842 (-)NCBIBuild 36Build 36hg18NCBI36
Celera927,474,665 - 27,501,967 (-)NCBICelera
Cytogenetic Map9p21.2NCBI
HuRef927,499,333 - 27,526,665 (-)NCBIHuRef
CHM1_1927,546,336 - 27,573,669 (-)NCBICHM1_1
T2T-CHM13v2.0927,557,112 - 27,584,475 (-)NCBIT2T-CHM13v2.0
C9orf72
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39435,191,285 - 35,226,153 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl435,191,285 - 35,226,175 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38435,191,285 - 35,226,153 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl435,191,285 - 35,226,175 (-)Ensemblmm10GRCm38
MGSCv37435,138,531 - 35,173,129 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36435,380,169 - 35,415,010 (-)NCBIMGSCv36mm8
Celera434,907,703 - 34,942,307 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map417.13NCBI
C9orf72
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554727,310,788 - 7,337,735 (+)Ensembl
ChiLan1.0NW_0049554727,299,092 - 7,337,591 (+)NCBIChiLan1.0ChiLan1.0
C9orf72
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21196,969,169 - 96,996,389 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1996,975,114 - 97,013,601 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0927,395,054 - 27,422,282 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1928,001,498 - 28,026,192 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl928,001,813 - 28,022,066 (-)EnsemblpanPan2panpan1.1
C9orf72
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11145,664,942 - 45,688,777 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1145,666,293 - 45,688,780 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1144,341,334 - 44,365,451 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01146,611,075 - 46,635,216 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1146,611,079 - 46,634,080 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11145,266,465 - 45,290,597 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01145,163,231 - 45,187,545 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01145,903,891 - 45,927,956 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
C9orf72
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947160,566,757 - 160,593,838 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366112,078,716 - 2,101,881 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366112,074,655 - 2,101,846 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C9orf72
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1038,389,331 - 38,415,901 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11038,389,366 - 38,415,903 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21043,532,175 - 43,558,682 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C9orf72
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1252,488,497 - 52,510,416 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
C9orf72
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473631,751,268 - 31,788,253 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473631,737,606 - 31,787,900 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
C9orf72
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11107,608,956 - 107,633,581 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in RGD1359108
173 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:143
Interacting mature miRNAs:170
Transcripts:ENSRNOT00000013181
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1578774Tcas8Tongue tumor susceptibility QTL 83.47tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)51570745160707451Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)51748608062486080Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51460607859606078Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51748608062486080Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2303577Gluco47Glucose level QTL 473blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51652001961520019Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat

Markers in Region
RH141650  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2549,771,371 - 49,771,576 (+)MAPPERmRatBN7.2
Rnor_6.0550,671,497 - 50,671,701NCBIRnor6.0
Rnor_5.0555,234,482 - 55,234,686UniSTSRnor5.0
RGSC_v3.4551,845,114 - 51,845,318UniSTSRGSC3.4
Celera548,515,116 - 48,515,320UniSTS
RH 3.4 Map5290.0UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
21 12 76 205 91 90 59 106 59 6 413 217 13 190 108 112 31 33 33

Sequence


Ensembl Acc Id: ENSRNOT00000013181   ⟹   ENSRNOP00000013181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl554,562,570 - 54,587,637 (-)Ensembl
mRatBN7.2 Ensembl549,766,340 - 49,791,408 (-)Ensembl
Rnor_6.0 Ensembl550,668,040 - 50,684,409 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106882   ⟹   ENSRNOP00000094028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl549,766,325 - 49,791,408 (-)Ensembl
RefSeq Acc Id: NM_001007702   ⟹   NP_001007703
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8554,562,570 - 54,587,357 (-)NCBI
mRatBN7.2549,766,340 - 49,791,128 (-)NCBI
Rnor_6.0550,666,444 - 50,691,523 (-)NCBI
Rnor_5.0555,229,460 - 55,254,965 (-)NCBI
RGSC_v3.4551,839,724 - 51,865,205 (-)RGD
Celera548,510,000 - 48,535,299 (-)RGD
Sequence:
RefSeq Acc Id: XM_039109829   ⟹   XP_038965757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8554,562,570 - 54,587,649 (-)NCBI
mRatBN7.2549,767,936 - 49,791,434 (-)NCBI
RefSeq Acc Id: XM_039109830   ⟹   XP_038965758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8554,573,413 - 54,587,636 (-)NCBI
mRatBN7.2549,777,448 - 49,791,178 (-)NCBI
RefSeq Acc Id: XR_010066381
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8554,573,413 - 54,587,645 (-)NCBI
RefSeq Acc Id: NP_001007703   ⟸   NM_001007702
- UniProtKB: Q66HC3 (UniProtKB/Swiss-Prot),   A6IIP4 (UniProtKB/TrEMBL),   R9PXU1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013181   ⟸   ENSRNOT00000013181
RefSeq Acc Id: XP_038965757   ⟸   XM_039109829
- Peptide Label: isoform X1
- UniProtKB: Q66HC3 (UniProtKB/Swiss-Prot),   A6IIP4 (UniProtKB/TrEMBL),   R9PXU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965758   ⟸   XM_039109830
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000094028   ⟸   ENSRNOT00000106882
Protein Domains
cDENN C9ORF72-type   dDENN C9ORF72-type   uDENN C9ORF72-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HC3-F1-model_v2 AlphaFold Q66HC3 1-481 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359108 AgrOrtholog
BioCyc Gene G2FUF-41634 BioCyc
Ensembl Genes ENSRNOG00000009478 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013181 ENTREZGENE
  ENSRNOT00000013181.7 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7113146 IMAGE-MGC_LOAD
InterPro C9orf72 UniProtKB/Swiss-Prot
KEGG Report rno:313155 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93924 IMAGE-MGC_LOAD
NCBI Gene 313155 ENTREZGENE
PANTHER GUANINE NUCLEOTIDE EXCHANGE C9ORF72 UniProtKB/Swiss-Prot
  PTHR31855 UniProtKB/Swiss-Prot
Pfam C9orf72-like UniProtKB/Swiss-Prot
PhenoGen RGD1359108 PhenoGen
PROSITE DENN_C9ORF72 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009478 RatGTEx
UniProt A6IIP4 ENTREZGENE, UniProtKB/TrEMBL
  A6IIP6_RAT UniProtKB/TrEMBL
  CI072_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  R9PXU1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 RGD1359108  similar to RIKEN cDNA 3110043O21  MGC93924  similar to RIKEN cDNA 3110043O21 gene  Symbol and Name updated 1299863 APPROVED
2005-07-29 MGC93924  similar to RIKEN cDNA 3110043O21 gene      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference