Or8s16 (olfactory receptor family 8 subfamily S member 16) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Or8s16 (olfactory receptor family 8 subfamily S member 16) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or8s16
Name: olfactory receptor family 8 subfamily S member 16
RGD ID: 1333884
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in signal transduction. Predicted to be active in plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1104; olfactory receptor gene Olr1104; olfactory receptor Olr1104; Olr1104
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,345,014 - 131,345,973 (-)NCBIGRCr8
mRatBN7.27129,465,967 - 129,466,926 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,464,357 - 129,470,780 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7131,271,149 - 131,272,108 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,496,681 - 133,497,640 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07133,409,170 - 133,410,129 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07139,927,495 - 139,932,679 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,928,936 - 139,929,895 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07139,072,444 - 139,073,403 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,052,744 - 137,053,703 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17137,129,180 - 137,130,140 (-)NCBI
Celera7125,957,194 - 125,958,153 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Or8s16
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:31
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000047272
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system appendage
High
Medium
Low 23 1
Below cutoff 2 1 1 16 10 13 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000047272   ⟹   ENSRNOP00000045455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,464,499 - 129,470,780 (-)Ensembl
Rnor_6.0 Ensembl7139,928,936 - 139,929,895 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094932   ⟹   ENSRNOP00000086307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,464,357 - 129,470,780 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099089   ⟹   ENSRNOP00000085871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,464,451 - 129,470,780 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107332   ⟹   ENSRNOP00000083439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,464,357 - 129,470,780 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110972   ⟹   ENSRNOP00000078733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,464,357 - 129,467,838 (-)Ensembl
RefSeq Acc Id: NM_001000906   ⟹   NP_001000906
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,345,014 - 131,345,973 (-)NCBI
mRatBN7.27129,465,967 - 129,466,926 (-)NCBI
Rnor_6.07139,928,936 - 139,929,895 (-)NCBI
Rnor_5.07139,072,444 - 139,073,403 (-)NCBI
RGSC_v3.47137,052,744 - 137,053,703 (-)RGD
Celera7125,957,194 - 125,958,153 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000906 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000045455
  ENSRNOP00000045455.1
  ENSRNOP00000078733.1
  ENSRNOP00000083439.1
  ENSRNOP00000085871.1
  ENSRNOP00000086307.1
Reference Protein Sequences
RefSeq Acc Id: NP_001000906   ⟸   NM_001000906
- UniProtKB: D4AE45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000045455   ⟸   ENSRNOT00000047272
RefSeq Acc Id: ENSRNOP00000085871   ⟸   ENSRNOT00000099089
RefSeq Acc Id: ENSRNOP00000083439   ⟸   ENSRNOT00000107332
RefSeq Acc Id: ENSRNOP00000078733   ⟸   ENSRNOT00000110972
RefSeq Acc Id: ENSRNOP00000086307   ⟸   ENSRNOT00000094932
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AE45-F1-model_v2 AlphaFold D4AE45 1-319 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333884 AgrOrtholog
BioCyc Gene G2FUF-32146 BioCyc
Ensembl Genes ENSRNOG00000031284 Ensembl
  ENSRNOG00000067164 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047272 ENTREZGENE
  ENSRNOT00000047272.2 UniProtKB/TrEMBL
  ENSRNOT00000094932.1 UniProtKB/TrEMBL
  ENSRNOT00000099089.1 UniProtKB/TrEMBL
  ENSRNOT00000107332.1 UniProtKB/TrEMBL
  ENSRNOT00000110972.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:405216 UniProtKB/TrEMBL
NCBI Gene 405216 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or8s16 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031284 RatGTEx
  ENSRNOG00000067164 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt D4AE45 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or8s16  olfactory receptor family 8 subfamily S member 16  Olr1104  olfactory receptor 1104  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1104  olfactory receptor 1104   Olr1104_predicted  olfactory receptor 1104 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1104_predicted  olfactory receptor 1104 (predicted)      Symbol and Name status set to approved 70820 APPROVED