Or4c3 (olfactory receptor family 4 subfamily C member 3) - Rat Genome Database

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Gene: Or4c3 (olfactory receptor family 4 subfamily C member 3) Rattus norvegicus
Analyze
Symbol: Or4c3
Name: olfactory receptor family 4 subfamily C member 3
RGD ID: 1333798
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be active in plasma membrane. Orthologous to human OR4C3 (olfactory receptor family 4 subfamily C member 3); INTERACTS WITH bisphenol A; 1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ortholog); 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 729; olfactory receptor gene Olr729; olfactory receptor Olr729; Olr729; ratchr3-74342019-74341093_ORF
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8396,498,768 - 96,499,694 (-)NCBIGRCr8
mRatBN7.2376,042,658 - 76,043,584 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,038,539 - 76,047,053 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx379,513,985 - 79,514,911 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0388,112,518 - 88,113,444 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0385,833,855 - 85,834,781 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0378,885,170 - 78,886,096 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl378,885,170 - 78,886,096 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0385,600,914 - 85,601,840 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4374,444,721 - 74,445,647 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1374,341,092 - 74,342,019 (-)NCBI
Celera375,286,624 - 75,287,550 (-)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or4c3Ratintellectual disability  ISORGD:13429348554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 

1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or4c3Rat1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsISORGD:15522826480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Or4c3Rat1,2-dichloroethane decreases expressionISORGD:15522826480464ethylene dichloride results in decreased expression of OR4C3 mRNACTDPMID:28960355
Or4c3Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISORGD:15522826480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Or4c3Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISORGD:15522826480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Or4c3Rat2,4,4'-trichlorobiphenyl multiple interactionsISORGD:15522826480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Or4c3Rat4,4'-sulfonyldiphenol decreases expressionISORGD:15522826480464bisphenol S results in decreased expression of OR4C3 mRNACTDPMID:33297965
Or4c3Rataflatoxin B1 decreases methylationISORGD:13429346480464Aflatoxin B1 results in decreased methylation of OR4C3 geneCTDPMID:27153756
Or4c3Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of OR4C3 mRNACTDPMID:25181051
Or4c3RatCGP 52608 multiple interactionsISORGD:13429346480464CGP 52608 promotes the reaction [RORA protein binds to OR4C3 gene]CTDPMID:28238834
Or4c3RatPCB138 multiple interactionsISORGD:15522826480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Or4c3Ratpotassium dichromate decreases expressionISORGD:15522826480464Potassium Dichromate results in decreased expression of OR4C3 mRNACTDPMID:23608068
Or4c3Ratresveratrol multiple interactionsISORGD:13429346480464[Plant Extracts co-treated with Resveratrol] results in decreased expression of OR4C3 mRNACTDPMID:23557933

1 to 12 of 12 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or4c3Ratdetection of chemical stimulus involved in sensory perception of smell  IEARGD:51314831303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or4c3Ratdetection of chemical stimulus involved in sensory perception of smell involved_inIEAGO:00049841600115GO_REF:0000108GOCGO_REF:0000108
Or4c3RatG protein-coupled receptor signaling pathway  IEARGD:51314831303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or4c3RatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276|InterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002
Or4c3RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or4c3Ratsensory perception of smell involved_inIEAUniProtKB-KW:KW-05521600115GO_REF:0000043UniProtGO_REF:0000043
Or4c3Ratsignal transduction involved_inIEAUniProtKB-KW:KW-08071600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or4c3Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Or4c3Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Or4c3Ratmembrane located_inIEAInterPro:IPR000276|InterPro:IPR000725|InterPro:IPR0174521600115GO_REF:0000002InterProGO_REF:0000002
Or4c3Ratplasma membrane is_active_inIBAMGI:3030568|PANTHER:PTN008273833|UniProtKB:Q8NGD01600115GO_REF:0000033GO_CentralGO_REF:0000033
Or4c3Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Or4c3Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or4c3RatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or4c3RatG protein-coupled receptor activity enablesIEAInterPro:IPR0002761600115GO_REF:0000002InterProGO_REF:0000002
Or4c3Ratolfactory receptor activity  IEARGD:51314831303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or4c3Ratolfactory receptor activity enablesIEAInterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002
Or4c3Ratolfactory receptor activity enablesIBAMGI:3030568|PANTHER:PTN001239295|UniProtKB:Q8NGD01600115GO_REF:0000033GO_CentralGO_REF:0000033

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or4c3Rattaste/olfaction phenotype  IEA 1303377 RGD 

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


Or4c3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8396,498,768 - 96,499,694 (-)NCBIGRCr8
mRatBN7.2376,042,658 - 76,043,584 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,038,539 - 76,047,053 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx379,513,985 - 79,514,911 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0388,112,518 - 88,113,444 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0385,833,855 - 85,834,781 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0378,885,170 - 78,886,096 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl378,885,170 - 78,886,096 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0385,600,914 - 85,601,840 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4374,444,721 - 74,445,647 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1374,341,092 - 74,342,019 (-)NCBI
Celera375,286,624 - 75,287,550 (-)NCBICelera
Cytogenetic Map3q24NCBI
OR4C3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381148,324,920 - 48,325,955 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1148,324,920 - 48,325,955 (+)EnsemblGRCh38hg38GRCh38
GRCh371148,346,472 - 48,347,507 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,303,069 - 48,304,058 (+)NCBINCBI36Build 36hg18NCBI36
Build 341148,303,068 - 48,304,058NCBI
Celera1148,496,460 - 48,497,449 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1148,057,325 - 48,058,314 (+)NCBIHuRef
CHM1_11148,345,992 - 48,346,981 (+)NCBICHM1_1
T2T-CHM13v2.01148,494,513 - 48,495,548 (+)NCBIT2T-CHM13v2.0
Or4c3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39289,851,482 - 89,852,408 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl289,848,870 - 89,855,921 (-)EnsemblGRCm39 Ensembl
GRCm38290,021,138 - 90,022,064 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,018,526 - 90,025,577 (-)EnsemblGRCm38mm10GRCm38
MGSCv37289,861,295 - 89,862,221 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36289,821,977 - 89,822,903 (-)NCBIMGSCv36mm8
Celera291,557,963 - 91,558,889 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.13NCBI
LOC100992635
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2950,540,277 - 50,541,312 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,560,179 - 50,561,214 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01148,285,340 - 48,286,363 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,826,896 - 48,827,919 (+)NCBIpanpan1.1PanPan1.1panPan2
OR4C3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,248,987 - 41,249,898 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1841,248,987 - 41,249,895 (-)EnsemblCanFam3.1canFam3CanFam3.1
LOC101967866
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494718,703,502 - 18,709,547 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936562815,150 - 821,189 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0

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Variants in Or4c3
6 total Variants

Predicted Target Of
Summary Value
Count of predictions:17
Count of miRNA genes:17
Interacting mature miRNAs:17
Transcripts:ENSRNOT00000008864
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat

1 to 10 of 39 rows



endoderm
reproductive system
respiratory system
1 9 1



Ensembl Acc Id: ENSRNOT00000008864   ⟹   ENSRNOP00000008864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl378,885,170 - 78,886,096 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118513   ⟹   ENSRNOP00000079473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl376,038,539 - 76,047,053 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119726   ⟹   ENSRNOP00000083746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl376,038,539 - 76,047,053 (-)Ensembl
RefSeq Acc Id: NM_001000574   ⟹   NP_001000574
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8396,498,768 - 96,499,694 (-)NCBI
mRatBN7.2376,042,658 - 76,043,584 (-)NCBI
Rnor_6.0378,885,170 - 78,886,096 (-)NCBI
Rnor_5.0385,600,914 - 85,601,840 (-)NCBI
RGSC_v3.4374,444,721 - 74,445,647 (-)RGD
Celera375,286,624 - 75,287,550 (-)RGD
Sequence:
Protein RefSeqs NP_001000574 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79456 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000079473.1
  ENSRNOP00000083746.1
  ENSRNOP00000106533
RefSeq Acc Id: NP_001000574   ⟸   NM_001000574
- UniProtKB: D3ZCV3 (UniProtKB/TrEMBL),   A6HN55 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008864   ⟸   ENSRNOT00000008864
Ensembl Acc Id: ENSRNOP00000079473   ⟸   ENSRNOT00000118513
Ensembl Acc Id: ENSRNOP00000083746   ⟸   ENSRNOT00000119726
G-protein coupled receptors family 1 profile

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZCV3-F1-model_v2 AlphaFold D3ZCV3 1-308 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-48796 BioCyc
Ensembl Genes ENSRNOG00000006771 Ensembl
  ENSRNOG00000069972 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000081832 ENTREZGENE
Ensembl Transcript ENSRNOT00000118513.1 UniProtKB/TrEMBL
  ENSRNOT00000119726.1 UniProtKB/TrEMBL
  ENSRNOT00000143883 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_Receptors UniProtKB/TrEMBL
KEGG Report rno:366116 UniProtKB/TrEMBL
NCBI Gene 366116 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or4c3 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006771 RatGTEx
  ENSRNOG00000069972 RatGTEx
  ENSRNOG00000081832 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6HN55 ENTREZGENE, UniProtKB/TrEMBL
  D3ZCV3 ENTREZGENE, UniProtKB/TrEMBL
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or4c3  olfactory receptor family 4 subfamily C member 3  Olr729  olfactory receptor 729  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr729  olfactory receptor 729   Olr729_predicted  olfactory receptor 729 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr729_predicted  olfactory receptor 729 (predicted)      Symbol and Name status set to approved 70820 APPROVED