Tex10 (testis expressed 10) - Rat Genome Database

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Gene: Tex10 (testis expressed 10) Rattus norvegicus
Analyze
Symbol: Tex10
Name: testis expressed 10
RGD ID: 1312045
Description: Predicted to be located in mitochondrion; nucleolus; and nucleoplasm. Predicted to be part of MLL1 complex. Predicted to be active in nucleus. Orthologous to human TEX10 (testis expressed 10); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,7-dihydropurine-6-thione; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC298065; testis expressed gene 10; testis-expressed protein 10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8567,557,770 - 67,603,904 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl567,557,770 - 67,603,904 (-)EnsemblGRCr8
mRatBN7.2562,762,230 - 62,808,373 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl562,762,230 - 62,808,373 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx564,739,864 - 64,786,013 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0566,559,162 - 66,605,312 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0566,528,626 - 66,574,780 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0564,179,247 - 64,225,844 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl564,179,247 - 64,225,844 (-)Ensemblrn6Rnor6.0
Rnor_5.0568,695,431 - 68,742,028 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4565,118,575 - 65,165,336 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera564,785,782 - 64,831,794 (+)NCBICelera
RGSC_v3.1565,124,068 - 65,160,400 (-)NCBI
Cytogenetic Map5q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
MLL1 complex  (IBA,IEA,ISO)
nucleolus  (IEA)
nucleoplasm  (IEA)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15960975  


Genomics

Comparative Map Data
Tex10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8567,557,770 - 67,603,904 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl567,557,770 - 67,603,904 (-)EnsemblGRCr8
mRatBN7.2562,762,230 - 62,808,373 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl562,762,230 - 62,808,373 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx564,739,864 - 64,786,013 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0566,559,162 - 66,605,312 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0566,528,626 - 66,574,780 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0564,179,247 - 64,225,844 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl564,179,247 - 64,225,844 (-)Ensemblrn6Rnor6.0
Rnor_5.0568,695,431 - 68,742,028 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4565,118,575 - 65,165,336 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera564,785,782 - 64,831,794 (+)NCBICelera
RGSC_v3.1565,124,068 - 65,160,400 (-)NCBI
Cytogenetic Map5q22NCBI
TEX10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389100,302,084 - 100,352,942 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9100,302,072 - 100,352,957 (-)Ensemblhg38GRCh38
GRCh379103,064,366 - 103,115,224 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369102,104,190 - 102,154,995 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349100,143,923 - 100,194,729NCBI
Celera973,577,686 - 73,628,526 (-)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef972,663,398 - 72,714,298 (-)NCBIHuRef
CHM1_19103,210,798 - 103,261,707 (-)NCBICHM1_1
T2T-CHM13v2.09112,473,720 - 112,524,578 (-)NCBIT2T-CHM13v2.0
Tex10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39448,430,805 - 48,473,492 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl448,430,858 - 48,473,459 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38448,430,858 - 48,473,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl448,430,858 - 48,473,459 (-)Ensemblmm10GRCm38
MGSCv37448,443,828 - 48,486,294 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36448,443,828 - 48,486,294 (-)NCBIMGSCv36mm8
Celera448,454,349 - 48,496,904 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.13NCBI
Tex10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541925,381,751 - 25,447,985 (+)Ensembl
ChiLan1.0NW_00495541925,382,222 - 25,445,492 (+)NCBIChiLan1.0ChiLan1.0
TEX10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21139,100,927 - 39,151,881 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1939,103,298 - 39,154,252 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0971,394,926 - 71,445,750 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1999,509,642 - 99,560,447 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl999,509,648 - 99,560,447 (-)EnsemblpanPan2panpan1.1
TEX10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11157,196,683 - 57,255,847 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1157,196,683 - 57,255,849 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1155,640,283 - 55,704,098 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01158,317,999 - 58,381,832 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1158,318,006 - 58,381,825 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11156,821,883 - 56,885,904 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01156,846,847 - 56,910,846 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01157,546,505 - 57,610,510 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tex10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947172,065,343 - 172,108,948 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365248,611,075 - 8,656,545 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365248,612,919 - 8,656,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,058,041 - 242,120,554 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11242,058,035 - 242,120,547 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21270,407,894 - 270,480,569 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEX10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11239,087,506 - 39,138,134 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1239,091,085 - 39,138,027 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660353,417,617 - 3,468,710 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624825640,971 - 701,039 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624825640,952 - 701,046 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tex10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11101,514,888 - 101,553,773 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tex10
383 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:289
Count of miRNA genes:191
Interacting mature miRNAs:213
Transcripts:ENSRNOT00000011401
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat

Markers in Region
RH131507  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2562,762,498 - 62,762,687 (+)MAPPERmRatBN7.2
Rnor_6.0564,179,516 - 64,179,704NCBIRnor6.0
Rnor_5.0568,695,700 - 68,695,888UniSTSRnor5.0
RGSC_v3.4565,118,844 - 65,119,032UniSTSRGSC3.4
Celera564,831,337 - 64,831,525UniSTS
RH 3.4 Map5413.6UniSTS
Cytogenetic Map5q22UniSTS
AW530466  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2562,763,574 - 62,763,790 (+)MAPPERmRatBN7.2
Rnor_6.0564,180,592 - 64,180,807NCBIRnor6.0
Rnor_5.0568,696,776 - 68,696,991UniSTSRnor5.0
RGSC_v3.4565,119,920 - 65,120,135UniSTSRGSC3.4
Celera564,830,234 - 64,830,449UniSTS
RH 3.4 Map5414.5UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 355 192 11 143 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000011401   ⟹   ENSRNOP00000011401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl567,557,770 - 67,603,904 (-)Ensembl
mRatBN7.2 Ensembl562,762,230 - 62,808,373 (-)Ensembl
Rnor_6.0 Ensembl564,179,247 - 64,225,844 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106377   ⟹   ENSRNOP00000090246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl567,557,770 - 67,603,904 (-)Ensembl
mRatBN7.2 Ensembl562,762,230 - 62,808,373 (-)Ensembl
RefSeq Acc Id: NM_001106653   ⟹   NP_001100123
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8567,557,770 - 67,603,904 (-)NCBI
mRatBN7.2562,762,230 - 62,808,373 (-)NCBI
Rnor_6.0564,179,247 - 64,225,844 (-)NCBI
Rnor_5.0568,695,431 - 68,742,028 (-)NCBI
RGSC_v3.4565,118,575 - 65,165,336 (-)RGD
Celera564,785,782 - 64,831,794 (+)RGD
Sequence:
RefSeq Acc Id: XM_006238034   ⟹   XP_006238096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8567,558,222 - 67,595,685 (-)NCBI
mRatBN7.2562,762,682 - 62,800,171 (-)NCBI
Rnor_6.0564,179,699 - 64,218,926 (-)NCBI
Rnor_5.0568,695,431 - 68,742,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039109450   ⟹   XP_038965378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8567,558,222 - 67,596,951 (-)NCBI
mRatBN7.2562,762,682 - 62,801,337 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100123 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238096 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965378 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL78192 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011401
  ENSRNOP00000011401.5
  ENSRNOP00000090246.1
RefSeq Acc Id: NP_001100123   ⟸   NM_001106653
- UniProtKB: D4A401 (UniProtKB/TrEMBL),   A6KJF4 (UniProtKB/TrEMBL),   A0A8I6AC27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238096   ⟸   XM_006238034
- Peptide Label: isoform X1
- UniProtKB: D4A401 (UniProtKB/TrEMBL),   A6KJF4 (UniProtKB/TrEMBL),   A0A8I6AC27 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011401   ⟸   ENSRNOT00000011401
RefSeq Acc Id: XP_038965378   ⟸   XM_039109450
- Peptide Label: isoform X1
- UniProtKB: D4A401 (UniProtKB/TrEMBL),   A6KJF4 (UniProtKB/TrEMBL),   A0A8I6AC27 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090246   ⟸   ENSRNOT00000106377
Protein Domains
Pre-rRNA-processing protein Ipi1 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A401-F1-model_v2 AlphaFold D4A401 1-929 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693725
Promoter ID:EPDNEW_R4249
Type:initiation region
Name:Tex10_1
Description:testis expressed 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0564,219,115 - 64,219,175EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1312045 AgrOrtholog
BioCyc Gene G2FUF-41354 BioCyc
Ensembl Genes ENSRNOG00000008618 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011401 ENTREZGENE
  ENSRNOT00000011401.7 UniProtKB/TrEMBL
  ENSRNOT00000106377.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  IPI1-like_dom UniProtKB/TrEMBL
KEGG Report rno:298065 UniProtKB/TrEMBL
NCBI Gene 298065 ENTREZGENE
PANTHER PTHR16056:SF2 UniProtKB/TrEMBL
  REGULATOR OF MICROTUBULE DYNAMICS PROTEIN UniProtKB/TrEMBL
Pfam Ipi1_N UniProtKB/TrEMBL
  TPR_TEX10 UniProtKB/TrEMBL
PhenoGen Tex10 PhenoGen
PROSITE HEAT_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008618 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6AC27 ENTREZGENE, UniProtKB/TrEMBL
  A6KJF4 ENTREZGENE, UniProtKB/TrEMBL
  D4A401 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-25 Tex10  testis expressed 10  Tex10  testis expressed gene 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tex10  testis expressed gene 10   Tex10_predicted  testis expressed gene 10 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tex10_predicted  testis expressed gene 10 (predicted)      Symbol and Name status set to approved 70820 APPROVED