Zfp503 (zinc finger protein 503) - Rat Genome Database

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Gene: Zfp503 (zinc finger protein 503) Rattus norvegicus
Analyze
Symbol: Zfp503
Name: zinc finger protein 503
RGD ID: 1312018
Description: Predicted to enable zinc ion binding activity. Predicted to be involved in several processes, including G1 to G0 transition involved in cell differentiation; negative regulation of cell population proliferation; and negative regulation of macromolecule biosynthetic process. Predicted to be active in nucleus. Orthologous to human ZNF503 (zinc finger protein 503); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Nolz-1; Nolz1; zinc-finger protein NOLZ1; Znf503
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8152,362,450 - 2,366,238 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl152,362,427 - 2,366,238 (+)EnsemblGRCr8
mRatBN7.2152,313,060 - 2,316,848 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl152,313,060 - 2,316,848 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx152,320,596 - 2,324,384 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,707,031 - 3,710,819 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0152,319,381 - 2,323,169 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0152,374,582 - 2,378,370 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,374,582 - 2,378,370 (+)Ensemblrn6Rnor6.0
Rnor_5.0152,357,098 - 2,360,886 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4152,352,911 - 2,356,699 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,263,682 - 2,267,470 (-)NCBICelera
RGSC_v3.1152,351,225 - 2,356,911 (+)NCBI
Cytogenetic Map15p16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dimethylarsinic acid  (ISO)
dimethylselenide  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
flusilazole  (EXP,ISO)
folic acid  (ISO)
fonofos  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hexaconazole  (ISO)
iron atom  (EXP)
iron(0)  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
methylarsonic acid  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
okadaic acid  (ISO)
orphenadrine  (EXP)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (EXP)
parathion  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenobarbital  (ISO)
phenylephrine  (EXP)
phenylmercury acetate  (ISO)
phenytoin  (EXP)
reactive oxygen species  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
terbufos  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triadimefon  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14983057   PMID:20735826  


Genomics

Comparative Map Data
Zfp503
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8152,362,450 - 2,366,238 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl152,362,427 - 2,366,238 (+)EnsemblGRCr8
mRatBN7.2152,313,060 - 2,316,848 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl152,313,060 - 2,316,848 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx152,320,596 - 2,324,384 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,707,031 - 3,710,819 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0152,319,381 - 2,323,169 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0152,374,582 - 2,378,370 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,374,582 - 2,378,370 (+)Ensemblrn6Rnor6.0
Rnor_5.0152,357,098 - 2,360,886 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4152,352,911 - 2,356,699 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,263,682 - 2,267,470 (-)NCBICelera
RGSC_v3.1152,351,225 - 2,356,911 (+)NCBI
Cytogenetic Map15p16NCBI
ZNF503
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381075,279,725 - 75,401,916 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1075,397,830 - 75,401,764 (-)Ensemblhg38GRCh38
GRCh371077,039,483 - 77,161,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361076,827,915 - 76,831,431 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341076,827,919 - 76,831,431NCBI
Celera1070,447,236 - 70,451,147 (-)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1071,156,391 - 71,160,302 (-)NCBIHuRef
CHM1_11077,439,888 - 77,443,800 (-)NCBICHM1_1
T2T-CHM13v2.01076,153,243 - 76,275,966 (-)NCBIT2T-CHM13v2.0
Zfp503
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391422,034,030 - 22,039,669 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1422,034,027 - 22,039,669 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381421,983,959 - 21,989,601 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1421,983,959 - 21,989,601 (-)Ensemblmm10GRCm38
MGSCv371422,803,184 - 22,808,823 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361420,772,514 - 20,778,153 (-)NCBIMGSCv36mm8
Celera1418,365,224 - 18,370,865 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1412.0NCBI
Znf503
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543716,724,465 - 16,731,930 (+)Ensembl
ChiLan1.0NW_00495543716,724,696 - 16,728,759 (+)NCBIChiLan1.0ChiLan1.0
ZNF503
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2887,552,148 - 87,556,931 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11087,557,473 - 87,561,067 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01071,924,190 - 71,928,182 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11074,589,848 - 74,593,539 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1074,587,682 - 74,593,545 (-)EnsemblpanPan2panpan1.1
ZNF503
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1425,584,096 - 25,588,204 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl425,585,078 - 25,587,861 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha425,718,698 - 25,722,665 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0425,866,513 - 25,870,489 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl425,867,496 - 25,870,288 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1425,769,740 - 25,773,700 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0425,962,093 - 25,966,051 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0426,318,412 - 26,322,382 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf503
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721355,489,230 - 55,493,779 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365213,982,929 - 3,985,580 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365213,982,447 - 3,986,867 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF503
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1477,924,822 - 77,928,453 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11477,924,391 - 77,928,754 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21484,021,442 - 84,025,950 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF503
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1955,977,247 - 55,981,128 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl955,977,584 - 55,981,263 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604816,463,656 - 16,467,674 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf503
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247548,749,216 - 8,753,788 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247548,749,954 - 8,754,069 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Znf503
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11291,759,380 - 91,764,013 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfp503
13 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:64
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000019644
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
1300142Bp191Blood pressure QTL 1913.14arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)15115177511Rat

Markers in Region
RH135913  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2152,316,094 - 2,316,299 (+)MAPPERmRatBN7.2
Rnor_6.0152,377,617 - 2,377,821NCBIRnor6.0
Rnor_5.0152,360,133 - 2,360,337UniSTSRnor5.0
RGSC_v3.4152,355,946 - 2,356,150UniSTSRGSC3.4
Celera152,264,231 - 2,264,435UniSTS
Cytogenetic Map15p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 87 59 6 351 187 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000019644   ⟹   ENSRNOP00000019644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl152,362,427 - 2,366,238 (+)Ensembl
mRatBN7.2 Ensembl152,313,060 - 2,316,848 (+)Ensembl
Rnor_6.0 Ensembl152,374,582 - 2,378,370 (+)Ensembl
RefSeq Acc Id: NM_001107250   ⟹   NP_001100720
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8152,362,450 - 2,366,238 (+)NCBI
mRatBN7.2152,313,060 - 2,316,848 (+)NCBI
Rnor_6.0152,374,582 - 2,378,370 (+)NCBI
Rnor_5.0152,357,098 - 2,360,886 (+)NCBI
RGSC_v3.4152,352,911 - 2,356,699 (+)RGD
Celera152,263,682 - 2,267,470 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100720 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66993 (Get FASTA)   NCBI Sequence Viewer  
  EDL86281 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019644
  ENSRNOP00000019644.4
RefSeq Acc Id: NP_001100720   ⟸   NM_001107250
- UniProtKB: G3V7W0 (UniProtKB/TrEMBL),   A6KKT7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019644   ⟸   ENSRNOT00000019644
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V7W0-F1-model_v2 AlphaFold G3V7W0 1-645 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699544
Promoter ID:EPDNEW_R10068
Type:multiple initiation site
Name:Zfp503_1
Description:zinc finger protein 503
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0152,374,693 - 2,374,753EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1312018 AgrOrtholog
BioCyc Gene G2FUF-14604 BioCyc
Ensembl Genes ENSRNOG00000014237 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019644 ENTREZGENE
  ENSRNOT00000019644.6 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Elbow/Noc_ZnFinger UniProtKB/TrEMBL
  Tscrpt_rep_NocA-like UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
KEGG Report rno:305687 UniProtKB/TrEMBL
NCBI Gene 305687 ENTREZGENE
PANTHER ZINC FINGER PROTEIN 503 UniProtKB/TrEMBL
  ZINC-FINGER PROTEIN NOLZ1-RELATED UniProtKB/TrEMBL
Pfam nlz1 UniProtKB/TrEMBL
PhenoGen Zfp503 PhenoGen
PROSITE ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014237 RatGTEx
UniProt A6KKT7 ENTREZGENE, UniProtKB/TrEMBL
  B2RZ19_RAT UniProtKB/TrEMBL
  G3V7W0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-19 Zfp503  zinc finger protein 503  Znf503  zinc finger protein 503  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Znf503  zinc finger protein 503  Zfp503  zinc finger protein 503   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfp503  zinc finger protein 503   Zfp503_predicted  zinc finger protein 503 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zfp503_predicted  zinc finger protein 503 (predicted)      Symbol and Name status set to approved 70820 APPROVED