Ckap4 (cytoskeleton-associated protein 4) - Rat Genome Database

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Gene: Ckap4 (cytoskeleton-associated protein 4) Rattus norvegicus
Analyze
Symbol: Ckap4
Name: cytoskeleton-associated protein 4
RGD ID: 1311989
Description: Predicted to be located in endoplasmic reticulum and lipid droplet. Predicted to be active in rough endoplasmic reticulum. Orthologous to human CKAP4 (cytoskeleton associated protein 4); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362859
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8721,118,527 - 21,126,624 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl721,118,085 - 21,126,624 (+)EnsemblGRCr8
mRatBN7.2719,230,814 - 19,238,914 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl719,230,203 - 19,238,914 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx721,191,759 - 21,199,836 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0723,354,431 - 23,362,511 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0723,131,395 - 23,139,469 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0724,935,243 - 24,947,595 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl724,939,498 - 24,947,595 (+)Ensemblrn6Rnor6.0
Rnor_5.0725,080,829 - 25,093,002 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4721,360,351 - 21,368,448 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera716,439,983 - 16,448,066 (+)NCBICelera
RGSC_v3.1721,380,378 - 21,388,718 (+)NCBI
Cytogenetic Map7q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzoates  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (EXP,ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
disulfiram  (ISO)
dopamine  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
fenoldopam  (EXP)
fenvalerate  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
furfural  (ISO)
gentamycin  (EXP)
indole-3-methanol  (EXP)
indometacin  (ISO)
inulin  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (EXP)
naled  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium chloride  (ISO)
sulfadimethoxine  (EXP)
tacrolimus hydrate  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Significant Down-Regulation of Urea Cycle Generates Clinically Relevant Proteomic Signature in Hepatocellular Carcinoma Patients with Macrovascular Invasion. Cao Y, etal., J Proteome Res. 2019 May 3;18(5):2032-2044. doi: 10.1021/acs.jproteome.8b00921. Epub 2019 Mar 29.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14645249   PMID:14741744   PMID:19056867   PMID:19401338   PMID:20870746   PMID:22658674   PMID:22681889   PMID:23979707   PMID:24454821   PMID:25002582   PMID:35352799  


Genomics

Comparative Map Data
Ckap4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8721,118,527 - 21,126,624 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl721,118,085 - 21,126,624 (+)EnsemblGRCr8
mRatBN7.2719,230,814 - 19,238,914 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl719,230,203 - 19,238,914 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx721,191,759 - 21,199,836 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0723,354,431 - 23,362,511 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0723,131,395 - 23,139,469 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0724,935,243 - 24,947,595 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl724,939,498 - 24,947,595 (+)Ensemblrn6Rnor6.0
Rnor_5.0725,080,829 - 25,093,002 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4721,360,351 - 21,368,448 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera716,439,983 - 16,448,066 (+)NCBICelera
RGSC_v3.1721,380,378 - 21,388,718 (+)NCBI
Cytogenetic Map7q13NCBI
CKAP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812106,237,881 - 106,248,020 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12106,237,880 - 106,304,279 (-)Ensemblhg38GRCh38
GRCh3712106,631,659 - 106,641,798 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612105,155,910 - 105,165,843 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3412105,134,258 - 105,144,180NCBI
Celera12106,297,004 - 106,307,057 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12103,692,427 - 103,702,094 (-)NCBIHuRef
CHM1_112106,597,488 - 106,607,544 (-)NCBICHM1_1
T2T-CHM13v2.012106,200,876 - 106,211,009 (-)NCBIT2T-CHM13v2.0
Ckap4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391084,362,169 - 84,369,752 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1084,362,169 - 84,369,926 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381084,526,305 - 84,533,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1084,526,305 - 84,534,062 (-)Ensemblmm10GRCm38
MGSCv371083,989,050 - 83,996,633 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361083,956,104 - 83,963,687 (-)NCBIMGSCv36mm8
Celera1086,505,218 - 86,512,538 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.52NCBI
Ckap4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540540,277,082 - 40,279,486 (-)NCBIChiLan1.0ChiLan1.0
CKAP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210114,305,691 - 114,316,052 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112114,302,088 - 114,312,039 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012103,817,736 - 103,827,575 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112107,212,467 - 107,221,835 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12107,212,467 - 107,221,842 (-)EnsemblpanPan2panpan1.1
CKAP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11032,389,226 - 32,398,464 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1032,389,086 - 32,398,475 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1032,309,072 - 32,318,318 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01033,230,145 - 33,239,393 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1033,229,742 - 33,239,291 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11032,966,175 - 32,975,415 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01033,254,845 - 33,264,099 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01033,442,555 - 33,451,808 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ckap4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494515,625,519 - 15,628,150 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364928,635,275 - 8,638,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CKAP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl514,021,131 - 14,030,039 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1514,021,131 - 14,031,196 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2514,098,558 - 14,107,444 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CKAP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111101,460,989 - 101,471,104 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11101,460,759 - 101,471,474 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037143,565,403 - 143,575,609 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ckap4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247503,067,167 - 3,079,095 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ckap4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11163,914,425 - 163,922,720 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ckap4
35 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:95
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000010601
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
RH133411  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2719,238,674 - 19,238,860 (+)MAPPERmRatBN7.2
Rnor_6.0724,947,356 - 24,947,541NCBIRnor6.0
Rnor_5.0725,092,763 - 25,092,948UniSTSRnor5.0
RGSC_v3.4721,368,209 - 21,368,394UniSTSRGSC3.4
Celera716,447,827 - 16,448,012UniSTS
RH 3.4 Map7114.5UniSTS
Cytogenetic Map7q13UniSTS
BI296357  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2719,237,997 - 19,238,147 (+)MAPPERmRatBN7.2
Rnor_6.0724,946,679 - 24,946,828NCBIRnor6.0
Rnor_5.0725,092,086 - 25,092,235UniSTSRnor5.0
RGSC_v3.4721,367,532 - 21,367,681UniSTSRGSC3.4
Celera716,447,150 - 16,447,299UniSTS
RH 3.4 Map7111.4UniSTS
Cytogenetic Map7q13UniSTS
BI275895  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8721,126,088 - 21,126,290 (+)Marker Load Pipeline
mRatBN7.2719,238,378 - 19,238,580 (+)MAPPERmRatBN7.2
Rnor_6.0724,947,060 - 24,947,261NCBIRnor6.0
Rnor_5.0725,092,467 - 25,092,668UniSTSRnor5.0
RGSC_v3.4721,367,913 - 21,368,114UniSTSRGSC3.4
Celera716,447,531 - 16,447,732UniSTS
RH 3.4 Map7109.9UniSTS
Cytogenetic Map7q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000010601   ⟹   ENSRNOP00000010601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl721,118,085 - 21,126,624 (+)Ensembl
mRatBN7.2 Ensembl719,230,203 - 19,238,914 (+)Ensembl
Rnor_6.0 Ensembl724,939,498 - 24,947,595 (+)Ensembl
RefSeq Acc Id: NM_001108740   ⟹   NP_001102210
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8721,118,527 - 21,126,624 (+)NCBI
mRatBN7.2719,230,814 - 19,238,914 (+)NCBI
Rnor_6.0724,939,498 - 24,947,595 (+)NCBI
Rnor_5.0725,080,829 - 25,093,002 (+)NCBI
RGSC_v3.4721,360,351 - 21,368,448 (+)RGD
Celera716,439,983 - 16,448,066 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102210 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM17093 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010601.7
RefSeq Acc Id: NP_001102210   ⟸   NM_001108740
- UniProtKB: D3ZH41 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010601   ⟸   ENSRNOT00000010601

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZH41-F1-model_v2 AlphaFold D3ZH41 1-326 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695100
Promoter ID:EPDNEW_R5625
Type:single initiation site
Name:Ckap4_1
Description:cytoskeleton-associated protein 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0724,939,398 - 24,939,458EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311989 AgrOrtholog
BioCyc Gene G2FUF-34616 BioCyc
Ensembl Genes ENSRNOG00000008016 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010601.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
KEGG Report rno:362859 UniProtKB/TrEMBL
NCBI Gene 362859 ENTREZGENE
PANTHER CYTOSKELETON-ASSOCIATED PROTEIN 4 UniProtKB/TrEMBL
  PTHR45161 UniProtKB/TrEMBL
PhenoGen Ckap4 PhenoGen
RatGTEx ENSRNOG00000008016 RatGTEx
UniProt A6IFF5_RAT UniProtKB/TrEMBL
  D3ZH41 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ckap4  cytoskeleton-associated protein 4   Ckap4_predicted  cytoskeleton-associated protein 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ckap4_predicted  cytoskeleton-associated protein 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED