Slc27a6 (solute carrier family 27 member 6) - Rat Genome Database

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Pathways
Gene: Slc27a6 (solute carrier family 27 member 6) Rattus norvegicus
Analyze
Symbol: Slc27a6
Name: solute carrier family 27 member 6
RGD ID: 1311977
Description: Predicted to enable long-chain fatty acid transmembrane transporter activity; long-chain fatty acid-CoA ligase activity; and very long-chain fatty acid-CoA ligase activity. Predicted to be involved in long-chain fatty acid import into cell and long-chain fatty acid metabolic process. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Biomarker of myocardial infarction. Orthologous to human SLC27A6 (solute carrier family 27 member 6); PARTICIPATES IN eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma; INTERACTS WITH alpha-Zearalanol; bisphenol A; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC100910486; LOC291582; long-chain fatty acid transport protein 6; long-chain fatty acid transport protein 6-like; solute carrier family 27 (fatty acid transporter), member 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81854,238,697 - 54,297,595 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1854,238,729 - 54,312,632 (+)EnsemblGRCr8
mRatBN7.21852,040,241 - 52,099,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1852,041,074 - 52,099,414 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1854,065,230 - 54,123,472 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01854,779,791 - 54,838,039 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01852,591,760 - 52,650,092 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01853,609,497 - 53,667,833 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1853,609,214 - 53,667,970 (+)Ensemblrn6Rnor6.0
Rnor_5.01852,825,799 - 52,891,779 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41854,351,476 - 54,412,298 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1850,159,252 - 50,211,328 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Fatty acid transporter levels and palmitate oxidation rate correlate with ejection fraction in the infarcted rat heart. Heather LC, etal., Cardiovasc Res. 2006 Dec 1;72(3):430-7. Epub 2006 Sep 1.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:18258213  


Genomics

Comparative Map Data
Slc27a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81854,238,697 - 54,297,595 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1854,238,729 - 54,312,632 (+)EnsemblGRCr8
mRatBN7.21852,040,241 - 52,099,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1852,041,074 - 52,099,414 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1854,065,230 - 54,123,472 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01854,779,791 - 54,838,039 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01852,591,760 - 52,650,092 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01853,609,497 - 53,667,833 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1853,609,214 - 53,667,970 (+)Ensemblrn6Rnor6.0
Rnor_5.01852,825,799 - 52,891,779 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41854,351,476 - 54,412,298 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1850,159,252 - 50,211,328 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
SLC27A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385128,965,488 - 129,033,635 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5128,538,013 - 129,036,767 (+)Ensemblhg38GRCh38
GRCh375128,301,181 - 128,369,328 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365128,329,109 - 128,397,234 (+)NCBIBuild 36Build 36hg18NCBI36
Build 345128,329,108 - 128,397,223NCBI
Celera5124,432,488 - 124,500,533 (+)NCBICelera
Cytogenetic Map5q23.3NCBI
HuRef5123,491,347 - 123,560,656 (+)NCBIHuRef
CHM1_15127,734,035 - 127,802,014 (+)NCBICHM1_1
T2T-CHM13v2.05129,484,343 - 129,552,406 (+)NCBIT2T-CHM13v2.0
Slc27a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391858,689,312 - 58,745,941 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1858,689,329 - 58,745,845 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381858,556,240 - 58,612,869 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1858,556,257 - 58,612,773 (+)Ensemblmm10GRCm38
MGSCv371858,715,894 - 58,772,523 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361858,681,609 - 58,738,238 (+)NCBIMGSCv36mm8
Celera1859,859,537 - 59,916,121 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1833.71NCBI
Slc27a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554151,973,308 - 2,041,866 (+)Ensembl
ChiLan1.0NW_0049554151,973,308 - 2,041,800 (+)NCBIChiLan1.0ChiLan1.0
SLC27A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24124,272,893 - 124,341,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15122,412,453 - 122,481,493 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05124,378,721 - 124,447,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15130,140,646 - 130,209,798 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5130,140,967 - 130,212,940 (+)EnsemblpanPan2panpan1.1
SLC27A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,899,270 - 17,968,940 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,899,556 - 17,968,910 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1116,695,506 - 16,764,832 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01118,648,822 - 18,718,353 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,648,148 - 18,720,578 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,368,838 - 17,438,043 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,207,260 - 17,276,725 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,820,174 - 17,889,446 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc27a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213140,578,487 - 140,634,443 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365042,152,394 - 2,208,394 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365042,152,449 - 2,208,295 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC27A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2131,750,473 - 131,814,410 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12131,749,759 - 131,848,278 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22137,111,909 - 137,175,153 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC27A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12331,911,865 - 31,981,217 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2331,913,575 - 31,981,147 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603446,054,655 - 46,117,474 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc27a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477412,287,918 - 12,344,375 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477412,287,576 - 12,344,604 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc27a6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11573,208,131 - 73,261,081 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc27a6
235 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:270
Count of miRNA genes:194
Interacting mature miRNAs:217
Transcripts:ENSRNOT00000045244
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184891705460064728Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185335052168120379Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)183857591983575919Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184562030686134022Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050563968306Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184891573786134022Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184891573786134022Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)185384517561982387Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183199089176990891Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184562030686134022Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184918722662647720Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183161050585493247Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)183337915878379158Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)184046238385462383Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)183199089176990891Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)183337915878379158Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)183337915878379158Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)185079521286134022Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)183337915878379158Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183152278376522783Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)183337915878379158Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184891705460064728Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183337915878379158Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)183337915878379158Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184891705460064728Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183161050577371277Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183612162681121626Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)183199089176990891Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184891573786134022Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183164450879484311Rat
1598832Glom11Glomerulus QTL 112.9kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)185326667186134022Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)183199089176990891Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)185079521286134022Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183161050572538878Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)185219805968120379Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 64 151 75 74 43 63 43 6 285 160 11 129 58 90 31 10 10

Sequence


Ensembl Acc Id: ENSRNOT00000077443   ⟹   ENSRNOP00000069400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1854,238,729 - 54,297,591 (+)Ensembl
mRatBN7.2 Ensembl1852,041,074 - 52,099,414 (+)Ensembl
Rnor_6.0 Ensembl1853,609,214 - 53,667,970 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156644   ⟹   ENSRNOP00000104869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1854,238,729 - 54,312,632 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000172839   ⟹   ENSRNOP00000104052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1854,238,729 - 54,298,142 (+)Ensembl
RefSeq Acc Id: NM_001106145   ⟹   NP_001099615
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,239,047 - 54,297,387 (+)NCBI
mRatBN7.21852,041,074 - 52,099,414 (+)NCBI
Rnor_6.01853,609,497 - 53,667,833 (+)NCBI
Rnor_5.01852,825,799 - 52,891,779 (+)NCBI
RGSC_v3.41854,351,476 - 54,412,298 (+)RGD
Celera1850,159,252 - 50,211,328 (+)RGD
Sequence:
RefSeq Acc Id: XM_039096697   ⟹   XP_038952625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,238,700 - 54,292,248 (+)NCBI
mRatBN7.21852,040,241 - 52,094,275 (+)NCBI
RefSeq Acc Id: XM_039096698   ⟹   XP_038952626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,263,206 - 54,297,595 (+)NCBI
mRatBN7.21852,064,865 - 52,099,622 (+)NCBI
RefSeq Acc Id: XM_063277212   ⟹   XP_063133282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81854,238,697 - 54,273,682 (+)NCBI
RefSeq Acc Id: NP_001099615   ⟸   NM_001106145
- UniProtKB: D4A2B8 (UniProtKB/TrEMBL),   A6IX92 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069400   ⟸   ENSRNOT00000077443
RefSeq Acc Id: XP_038952625   ⟸   XM_039096697
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038952626   ⟸   XM_039096698
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133282   ⟸   XM_063277212
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000104052   ⟸   ENSRNOT00000172839
Ensembl Acc Id: ENSRNOP00000104869   ⟸   ENSRNOT00000156644
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A2B8-F1-model_v2 AlphaFold D4A2B8 1-619 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700797
Promoter ID:EPDNEW_R11320
Type:initiation region
Name:Slc27a6_1
Description:solute carrier family 27 member 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01853,609,275 - 53,609,335EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311977 AgrOrtholog
BioCyc Gene G2FUF-7401 BioCyc
Ensembl Genes ENSRNOG00000058193 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000077443 ENTREZGENE
  ENSRNOT00000077443.3 UniProtKB/TrEMBL
  ENSRNOT00000156644.1 UniProtKB/TrEMBL
  ENSRNOT00000172839.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.300.30 UniProtKB/TrEMBL
  3.40.50.12780 UniProtKB/TrEMBL
InterPro AMP-bd_C UniProtKB/TrEMBL
  AMP-bd_C_sf UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  AMP-dep_Synthh-like_sf UniProtKB/TrEMBL
KEGG Report rno:291582 UniProtKB/TrEMBL
NCBI Gene 291582 ENTREZGENE
PANTHER LONG-CHAIN FATTY ACID TRANSPORT PROTEIN UniProtKB/TrEMBL
  PTHR43107:SF10 UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/TrEMBL
PhenoGen Slc27a6 PhenoGen
PROSITE AMP_BINDING UniProtKB/TrEMBL
RatGTEx ENSRNOG00000058193 RatGTEx
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/TrEMBL
UniProt A0ABK0LGU3_RAT UniProtKB/TrEMBL
  A0ABK0LVV2_RAT UniProtKB/TrEMBL
  A6IX92 ENTREZGENE, UniProtKB/TrEMBL
  D4A2B8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Slc27a6  solute carrier family 27 member 6  LOC100910486  long-chain fatty acid transport protein 6-like  Data merged from RGD:6498330 737654 PROVISIONAL
2016-03-09 Slc27a6  solute carrier family 27 member 6  Slc27a6  solute carrier family 27 (fatty acid transporter), member 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100910486  long-chain fatty acid transport protein 6-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Slc27a6  solute carrier family 27 (fatty acid transporter), member 6   Slc27a6_predicted  solute carrier family 27 (fatty acid transporter), member 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Slc27a6_predicted  solute carrier family 27 (fatty acid transporter), member 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED