Aox4 (aldehyde oxidase 4) - Rat Genome Database

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Gene: Aox4 (aldehyde oxidase 4) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Aox4 (Ensembl: Aox3)
Name: aldehyde oxidase 4 (Ensembl:aldehyde oxidase 3)
RGD ID: 1311975
Description: Predicted to enable several functions, including 2 iron, 2 sulfur cluster binding activity; ion binding activity; and molybdopterin cofactor binding activity. Predicted to be involved in xenobiotic metabolic process. Predicted to be located in cytosol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Aa2-245; aldehyde oxidase homolog 2; Aoh2; azaheterocycle hydroxylase 4; LOC316424; retinal oxidase; RGD1311975; similar to aldehyde oxidase structural homolog 2
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8967,255,437 - 67,312,364 (+)NCBIGRCr8
mRatBN7.2959,761,238 - 59,818,169 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,664,809 - 59,818,169 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx968,254,225 - 68,311,082 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,370,133 - 73,427,003 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0971,688,228 - 71,745,091 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0965,110,330 - 65,167,188 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl965,110,325 - 65,167,192 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0964,906,928 - 64,964,049 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4956,879,059 - 56,938,624 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1957,026,040 - 57,085,606 (+)NCBI
Celera957,204,698 - 57,260,705 (+)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (ISS)
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15383531   PMID:23263164  


Genomics

Variants

.
Variants in Aox4
325 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:332
Count of miRNA genes:194
Interacting mature miRNAs:246
Transcripts:ENSRNOT00000033068
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 13 9 2 9 5 4
Low 1 10 14 2 14 2 8 8 11 9 7 7 8
Below cutoff 2 5 16 16 3 16 3 42 16 25

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000033068   ⟹   ENSRNOP00000035377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,761,238 - 59,818,169 (+)Ensembl
Rnor_6.0 Ensembl965,110,330 - 65,167,185 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081146   ⟹   ENSRNOP00000072046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,664,809 - 59,744,777 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083902   ⟹   ENSRNOP00000096817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,742,346 - 59,797,689 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,761,238 - 59,808,667 (+)Ensembl
Rnor_6.0 Ensembl965,110,325 - 65,157,734 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092868   ⟹   ENSRNOP00000075953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,768,580 - 59,818,169 (+)Ensembl
Rnor_6.0 Ensembl965,110,330 - 65,167,192 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092906   ⟹   ENSRNOP00000076035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,664,809 - 59,749,737 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107385   ⟹   ENSRNOP00000080564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,665,678 - 59,744,777 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112101   ⟹   ENSRNOP00000076637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,664,809 - 59,735,468 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112397   ⟹   ENSRNOP00000088146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,740,344 - 59,818,169 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115602   ⟹   ENSRNOP00000089862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,664,809 - 59,684,180 (+)Ensembl
RefSeq Acc Id: NM_001008523   ⟹   NP_001008523
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,255,437 - 67,312,364 (+)NCBI
mRatBN7.2959,761,238 - 59,818,169 (+)NCBI
Rnor_6.0965,110,330 - 65,167,185 (+)NCBI
Rnor_5.0964,906,928 - 64,964,049 (+)NCBI
RGSC_v3.4956,879,059 - 56,938,624 (+)RGD
Celera957,204,698 - 57,260,705 (+)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001008523   ⟸   NM_001008523
- UniProtKB: Q5QE79 (UniProtKB/Swiss-Prot),   A0A0G2QC16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075953   ⟸   ENSRNOT00000092868
RefSeq Acc Id: ENSRNOP00000035377   ⟸   ENSRNOT00000033068
RefSeq Acc Id: ENSRNOP00000076035   ⟸   ENSRNOT00000092906
RefSeq Acc Id: ENSRNOP00000088146   ⟸   ENSRNOT00000112397
RefSeq Acc Id: ENSRNOP00000080564   ⟸   ENSRNOT00000107385
RefSeq Acc Id: ENSRNOP00000072046   ⟸   ENSRNOT00000081146
RefSeq Acc Id: ENSRNOP00000076637   ⟸   ENSRNOT00000112101
RefSeq Acc Id: ENSRNOP00000089862   ⟸   ENSRNOT00000115602
RefSeq Acc Id: ENSRNOP00000096817   ⟸   ENSRNOT00000083902
Protein Domains
2Fe-2S ferredoxin-type   FAD-binding PCMH-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5QE79-F1-model_v2 AlphaFold Q5QE79 1-1334 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696685
Promoter ID:EPDNEW_R7210
Type:single initiation site
Name:Aox4_1
Description:aldehyde oxidase 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0965,110,342 - 65,110,402EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311975 AgrOrtholog
BioCyc Gene G2FUF-27457 BioCyc
Ensembl Genes ENSRNOG00000014555 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033068 ENTREZGENE
  ENSRNOT00000033068.6 UniProtKB/TrEMBL
  ENSRNOT00000083902.2 UniProtKB/TrEMBL
  ENSRNOT00000092804.2 UniProtKB/TrEMBL
  ENSRNOT00000092868.2 UniProtKB/TrEMBL
  ENSRNOT00000107385.1 UniProtKB/TrEMBL
  ENSRNOT00000112397.1 UniProtKB/TrEMBL
  ENSRNOT00000115602.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.43.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.465.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  [2Fe-2S]-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CO dehydrogenase flavoprotein, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 2Fe-2S-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2Fe-2S-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2Fe-2S_ferredoxin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2Fe-2S_ferredoxin-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2Fe2S_fd_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ald_Oxase/Xan_DH_a/b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ald_Oxase/Xan_DH_a/b_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ald_Oxase/xanthine_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aldehyde_oxidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AldOxase/xan_DH_MoCoBD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AldOxase/xan_DH_Mopterin-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AldOxase/xan_DH_Mopterin-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Beta-grasp_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CO_DH_flav_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CO_DH_flav_C_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD-bd_PCMH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD-bd_PCMH-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD-bd_PCMH_sub1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD-bd_PCMH_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mopterin_DH_FAD-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:316424 UniProtKB/Swiss-Prot
NCBI Gene 316424 ENTREZGENE
PANTHER ALDEHYDE OXIDASE 3 UniProtKB/TrEMBL
  ALDEHYDE OXIDASE 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XANTHINE DEHYDROGENASE UniProtKB/Swiss-Prot
  XANTHINE DEHYDROGENASE UniProtKB/TrEMBL
  XANTHINE DEHYDROGENASE UniProtKB/TrEMBL
  XANTHINE DEHYDROGENASE UniProtKB/TrEMBL
Pfam Ald_Xan_dh_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ald_Xan_dh_C2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CO_deh_flav_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD_binding_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fer2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fer2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MoCoBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Aox4 PhenoGen
PIRSF Xanthine_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE 2FE2S_FER_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2FE2S_FER_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD_PCMH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014555 RatGTEx
SMART Ald_Xan_dh_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CO_deh_flav_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47741 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54292 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54665 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55447 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56003 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56176 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2QC16 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GWM7_RAT UniProtKB/TrEMBL
  A0A8I5ZJJ1_RAT UniProtKB/TrEMBL
  A0A8I5ZQJ3_RAT UniProtKB/TrEMBL
  A0A8I6A9L1_RAT UniProtKB/TrEMBL
  A0A8I6GM92_RAT UniProtKB/TrEMBL
  AOXD_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q7TP79_RAT UniProtKB/TrEMBL
UniProt Secondary E9PTJ9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Aox4  aldehyde oxidase 4  RGD1311975  similar to aldehyde oxidase structural homolog 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311975  similar to aldehyde oxidase structural homolog 2  RGD1311975_predicted  similar to aldehyde oxidase structural homolog 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311975_predicted  similar to aldehyde oxidase structural homolog 2 (predicted)  LOC316424_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316424_predicted  similar to aldehyde oxidase structural homolog 2 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL