Acin1 (apoptotic chromatin condensation inducer 1) - Rat Genome Database

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Gene: Acin1 (apoptotic chromatin condensation inducer 1) Rattus norvegicus
Analyze
Symbol: Acin1
Name: apoptotic chromatin condensation inducer 1
RGD ID: 1311945
Description: Predicted to enable nucleic acid binding activity. Predicted to be involved in several processes, including apoptotic chromosome condensation; negative regulation of mRNA splicing, via spliceosome; and positive regulation of monocyte differentiation. Predicted to be located in nuclear speck and nucleolus. Predicted to be part of ASAP complex and exon-exon junction complex. Orthologous to human ACIN1 (apoptotic chromatin condensation inducer 1); PARTICIPATES IN mRNA decay pathway; RNA transport pathway; spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: acinus; apoptotic chromatin condensation inducer in the nucleus; LOC305884
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,072,121 - 32,117,004 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1532,072,123 - 32,117,166 (-)EnsemblGRCr8
mRatBN7.21528,102,112 - 28,147,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,102,112 - 28,147,001 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1529,941,238 - 29,985,942 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,088,452 - 31,133,156 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,338,187 - 29,382,916 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,288,369 - 33,333,256 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,288,374 - 33,333,417 (-)Ensemblrn6Rnor6.0
Rnor_5.01537,173,164 - 37,218,052 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41532,719,863 - 32,764,748 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1527,680,316 - 27,725,172 (-)NCBICelera
RGSC_v3.11532,735,564 - 32,780,562 (-)NCBI
Cytogenetic Map15p13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsenite(3-)  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cocaine  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
diethylstilbestrol  (ISO)
diuron  (EXP,ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
hydralazine  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
methamphetamine  (ISO)
methoxychlor  (ISO)
mono(2-ethyl-5-oxohexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
nitrates  (ISO)
nobiletin  (ISO)
Panduratin A  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
resveratrol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
Soman  (EXP)
temozolomide  (ISO)
tetraphene  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
ASAP complex  (IBA,ISO)
exon-exon junction complex  (ISO)
nuclear lumen  (IEA)
nuclear speck  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10490026   PMID:10716735   PMID:11208865   PMID:12393560   PMID:12477932   PMID:12665594   PMID:12947022   PMID:16314458   PMID:16767516   PMID:20966198   PMID:22658674  
PMID:22681889   PMID:25931508  


Genomics

Comparative Map Data
Acin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,072,121 - 32,117,004 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1532,072,123 - 32,117,166 (-)EnsemblGRCr8
mRatBN7.21528,102,112 - 28,147,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,102,112 - 28,147,001 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1529,941,238 - 29,985,942 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,088,452 - 31,133,156 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,338,187 - 29,382,916 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,288,369 - 33,333,256 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,288,374 - 33,333,417 (-)Ensemblrn6Rnor6.0
Rnor_5.01537,173,164 - 37,218,052 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41532,719,863 - 32,764,748 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1527,680,316 - 27,725,172 (-)NCBICelera
RGSC_v3.11532,735,564 - 32,780,562 (-)NCBI
Cytogenetic Map15p13NCBI
ACIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,058,564 - 23,095,614 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,058,561 - 23,095,614 (-)Ensemblhg38GRCh38
GRCh371423,527,773 - 23,564,680 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,597,616 - 22,634,663 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341422,597,615 - 22,634,663NCBI
Celera143,390,463 - 3,427,528 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,644,728 - 3,681,739 (-)NCBIHuRef
CHM1_11423,526,403 - 23,563,452 (-)NCBICHM1_1
T2T-CHM13v2.01417,259,183 - 17,296,258 (-)NCBIT2T-CHM13v2.0
Acin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,879,618 - 54,924,422 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,879,618 - 54,924,388 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381454,642,161 - 54,686,965 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,642,161 - 54,686,931 (-)Ensemblmm10GRCm38
MGSCv371455,260,998 - 55,305,768 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361453,596,372 - 53,641,136 (-)NCBIMGSCv36mm8
Celera1452,430,550 - 52,475,165 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.87NCBI
Acin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,206,675 - 37,246,922 (+)Ensembl
ChiLan1.0NW_00495540937,206,675 - 37,246,851 (+)NCBIChiLan1.0ChiLan1.0
ACIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,491,068 - 24,528,131 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,707,556 - 23,744,620 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,878,426 - 3,915,802 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,975,370 - 22,012,092 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,975,370 - 22,012,092 (-)EnsemblpanPan2panpan1.1
ACIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,370,469 - 3,405,710 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,371,004 - 3,405,682 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha83,319,100 - 3,354,110 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.083,478,273 - 3,513,264 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,478,276 - 3,513,249 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,169,678 - 3,204,860 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,230,907 - 3,265,874 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,492,983 - 3,527,963 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Acin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,124,361 - 35,161,155 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,227,198 - 1,264,855 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,252,083 - 1,264,018 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,951,203 - 75,989,231 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1775,951,203 - 75,989,234 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,287,021 - 81,325,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,427,866 - 23,464,717 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,427,573 - 23,464,394 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605922,952,471 - 22,989,345 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,444,467 - 9,483,975 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248209,444,435 - 9,483,867 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Acin1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11270,313,529 - 70,358,491 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Acin1
71 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:210
Count of miRNA genes:144
Interacting mature miRNAs:167
Transcripts:ENSRNOT00000018982
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat

Markers in Region
AI073030  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,102,205 - 28,102,399 (+)MAPPERmRatBN7.2
Rnor_6.01533,288,463 - 33,288,656NCBIRnor6.0
Rnor_5.01537,173,258 - 37,173,451UniSTSRnor5.0
RGSC_v3.41532,719,954 - 32,720,147UniSTSRGSC3.4
Celera1527,680,407 - 27,680,600UniSTS
Cytogenetic Map15p13UniSTS
RH138440  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,123,317 - 28,123,486 (+)MAPPERmRatBN7.2
Rnor_6.01533,309,574 - 33,309,742NCBIRnor6.0
Rnor_5.01537,194,370 - 37,194,538UniSTSRnor5.0
RGSC_v3.41532,741,066 - 32,741,234UniSTSRGSC3.4
Celera1527,701,518 - 27,701,686UniSTS
RH 3.4 Map13640.4UniSTS
Cytogenetic Map15p13UniSTS
RH141273  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,123,317 - 28,123,498 (+)MAPPERmRatBN7.2
Rnor_6.01533,309,574 - 33,309,754NCBIRnor6.0
Rnor_5.01537,194,370 - 37,194,550UniSTSRnor5.0
RGSC_v3.41532,741,066 - 32,741,246UniSTSRGSC3.4
Celera1527,701,518 - 27,701,698UniSTS
Cytogenetic Map15p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA925536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC109100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI575776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA512047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB744719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF110347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EV770592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM029308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM031419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM033220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000018982   ⟹   ENSRNOP00000018982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,072,123 - 32,117,004 (-)Ensembl
mRatBN7.2 Ensembl1528,102,117 - 28,147,001 (-)Ensembl
Rnor_6.0 Ensembl1533,288,374 - 33,333,417 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109889   ⟹   ENSRNOP00000076634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,072,123 - 32,117,166 (-)Ensembl
mRatBN7.2 Ensembl1528,102,117 - 28,147,001 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111598   ⟹   ENSRNOP00000090495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,072,123 - 32,084,389 (-)Ensembl
mRatBN7.2 Ensembl1528,102,112 - 28,114,206 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112466   ⟹   ENSRNOP00000096887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,072,123 - 32,117,004 (-)Ensembl
mRatBN7.2 Ensembl1528,102,117 - 28,147,001 (-)Ensembl
RefSeq Acc Id: NM_001170468   ⟹   NP_001163939
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,117,004 (-)NCBI
mRatBN7.21528,102,115 - 28,147,001 (-)NCBI
Rnor_6.01533,288,372 - 33,333,256 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
RGSC_v3.41532,719,863 - 32,764,748 (-)RGD
Celera1527,680,316 - 27,725,172 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251958   ⟹   XP_006252020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
mRatBN7.21528,102,115 - 28,146,997 (-)NCBI
Rnor_6.01533,288,372 - 33,333,250 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251959   ⟹   XP_006252021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
mRatBN7.21528,102,115 - 28,146,997 (-)NCBI
Rnor_6.01533,288,372 - 33,333,250 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251960   ⟹   XP_006252022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
mRatBN7.21528,102,115 - 28,146,997 (-)NCBI
Rnor_6.01533,288,372 - 33,333,250 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251963   ⟹   XP_006252025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,084,218 (-)NCBI
mRatBN7.21528,102,112 - 28,114,044 (-)NCBI
Rnor_6.01533,288,369 - 33,300,415 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599684   ⟹   XP_017455173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
mRatBN7.21528,102,115 - 28,146,997 (-)NCBI
Rnor_6.01533,288,372 - 33,333,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093289   ⟹   XP_038949217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,081,122 - 32,116,967 (-)NCBI
mRatBN7.21528,111,114 - 28,146,997 (-)NCBI
RefSeq Acc Id: XM_063274234   ⟹   XP_063130304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274235   ⟹   XP_063130305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274236   ⟹   XP_063130306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274237   ⟹   XP_063130307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274238   ⟹   XP_063130308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274239   ⟹   XP_063130309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274240   ⟹   XP_063130310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274241   ⟹   XP_063130311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274242   ⟹   XP_063130312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274243   ⟹   XP_063130313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274244   ⟹   XP_063130314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,208 (-)NCBI
RefSeq Acc Id: XM_063274245   ⟹   XP_063130315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274246   ⟹   XP_063130316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,078,695 - 32,116,967 (-)NCBI
RefSeq Acc Id: XM_063274247   ⟹   XP_063130317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,072,121 - 32,084,218 (-)NCBI
RefSeq Acc Id: XR_005493719
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,076,989 - 32,116,967 (-)NCBI
mRatBN7.21528,106,986 - 28,146,997 (-)NCBI
RefSeq Acc Id: XR_010057814
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,076,989 - 32,116,967 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001163939 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252020 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252021 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252022 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252025 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455173 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949217 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130304 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130305 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130306 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130307 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130308 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130309 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130310 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130311 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130312 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130313 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130314 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130315 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130316 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130317 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91320 (Get FASTA)   NCBI Sequence Viewer  
  EDM14185 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018982
  ENSRNOP00000018982.4
  ENSRNOP00000076634
  ENSRNOP00000076634.2
  ENSRNOP00000090495
  ENSRNOP00000090495.1
  ENSRNOP00000096887
  ENSRNOP00000096887.2
RefSeq Acc Id: NP_001163939   ⟸   NM_001170468
- UniProtKB: E9PST5 (UniProtKB/TrEMBL),   A0A8I6AU50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252025   ⟸   XM_006251963
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_006252022   ⟸   XM_006251960
- Peptide Label: isoform X10
- UniProtKB: A0A8I5Y5F2 (UniProtKB/TrEMBL),   A0A8I6AU50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252021   ⟸   XM_006251959
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252020   ⟸   XM_006251958
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455173   ⟸   XM_017599684
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018982   ⟸   ENSRNOT00000018982
RefSeq Acc Id: XP_038949217   ⟸   XM_039093289
- Peptide Label: isoform X18
Ensembl Acc Id: ENSRNOP00000076634   ⟸   ENSRNOT00000109889
Ensembl Acc Id: ENSRNOP00000090495   ⟸   ENSRNOT00000111598
Ensembl Acc Id: ENSRNOP00000096887   ⟸   ENSRNOT00000112466
RefSeq Acc Id: XP_063130315   ⟸   XM_063274245
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130313   ⟸   XM_063274243
- Peptide Label: isoform X14
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130310   ⟸   XM_063274240
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130311   ⟸   XM_063274241
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130309   ⟸   XM_063274239
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130307   ⟸   XM_063274237
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130312   ⟸   XM_063274242
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130305   ⟸   XM_063274235
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130308   ⟸   XM_063274238
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130306   ⟸   XM_063274236
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130304   ⟸   XM_063274234
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130314   ⟸   XM_063274244
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AU50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130317   ⟸   XM_063274247
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063130316   ⟸   XM_063274246
- Peptide Label: isoform X17
Protein Domains
SAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PST5-F1-model_v2 AlphaFold E9PST5 1-1339 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311945 AgrOrtholog
BioCyc Gene G2FUF-13786 BioCyc
Ensembl Genes ENSRNOG00000013533 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018982 ENTREZGENE
  ENSRNOT00000018982.8 UniProtKB/TrEMBL
  ENSRNOT00000109889 ENTREZGENE
  ENSRNOT00000109889.2 UniProtKB/TrEMBL
  ENSRNOT00000111598 ENTREZGENE
  ENSRNOT00000111598.2 UniProtKB/TrEMBL
  ENSRNOT00000112466 ENTREZGENE
  ENSRNOT00000112466.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.30 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7313280 IMAGE-MGC_LOAD
InterPro Acinus_RRM UniProtKB/TrEMBL
  EJC-associated_protein UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RSB_motif UniProtKB/TrEMBL
  SAP_dom UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/TrEMBL
KEGG Report rno:305884 UniProtKB/TrEMBL
MGC_CLONE MGC:109300 IMAGE-MGC_LOAD
NCBI Gene 305884 ENTREZGENE
PANTHER APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS UniProtKB/TrEMBL
  APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS UniProtKB/TrEMBL
Pfam RSB_motif UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
PhenoGen Acin1 PhenoGen
PROSITE SAP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013533 RatGTEx
SMART SAP UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
  SSF68906 UniProtKB/TrEMBL
UniProt A0A8I5Y5F2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AA64_RAT UniProtKB/TrEMBL
  A0A8I6AU50 ENTREZGENE, UniProtKB/TrEMBL
  A6KGV6_RAT UniProtKB/TrEMBL
  E9PST5 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJU9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Acin1  apoptotic chromatin condensation inducer 1  Acin1_predicted  apoptotic chromatin condensation inducer 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Acin1_predicted  apoptotic chromatin condensation inducer 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED