Dynlt5 (dynein light chain Tctex-type family member 5) - Rat Genome Database

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Gene: Dynlt5 (dynein light chain Tctex-type family member 5) Rattus norvegicus
Analyze
Symbol: Dynlt5
Name: dynein light chain Tctex-type family member 5
RGD ID: 1311932
Description: Predicted to enable dynein intermediate chain binding activity. Predicted to be involved in microtubule-based movement. Predicted to be part of cytoplasmic dynein complex. Predicted to be active in cytoplasm. Orthologous to human DYNLT5 (dynein light chain Tctex-type family member 5); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dynein light chain Tctex-type 5; LOC362553; RGD1311932; similar to RIKEN cDNA 1700055O19; Tctex1 domain containing 1; tctex1 domain-containing protein 1; Tctex1d1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85122,964,568 - 122,987,304 (+)NCBIGRCr8
mRatBN7.25117,735,509 - 117,758,221 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5117,735,439 - 117,757,588 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5120,375,538 - 120,390,630 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05122,100,881 - 122,115,975 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05122,152,157 - 122,167,245 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05122,498,892 - 122,522,110 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5122,508,388 - 122,521,245 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05126,366,759 - 126,389,436 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45123,913,159 - 123,928,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15123,924,584 - 123,933,489 (+)NCBI
Celera5116,316,319 - 116,331,423 (+)NCBICelera
Cytogenetic Map5q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:15632090  


Genomics

Comparative Map Data
Dynlt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85122,964,568 - 122,987,304 (+)NCBIGRCr8
mRatBN7.25117,735,509 - 117,758,221 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5117,735,439 - 117,757,588 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5120,375,538 - 120,390,630 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05122,100,881 - 122,115,975 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05122,152,157 - 122,167,245 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05122,498,892 - 122,522,110 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5122,508,388 - 122,521,245 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05126,366,759 - 126,389,436 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45123,913,159 - 123,928,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15123,924,584 - 123,933,489 (+)NCBI
Celera5116,316,319 - 116,331,423 (+)NCBICelera
Cytogenetic Map5q33NCBI
DYNLT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38166,752,459 - 66,779,047 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl166,752,459 - 66,779,047 (+)EnsemblGRCh38hg38GRCh38
GRCh37167,218,142 - 67,244,730 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36166,990,730 - 67,017,058 (+)NCBINCBI36Build 36hg18NCBI36
Celera165,508,109 - 65,534,705 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef165,326,389 - 65,352,986 (+)NCBIHuRef
CHM1_1167,333,499 - 67,360,094 (+)NCBICHM1_1
T2T-CHM13v2.0166,629,993 - 66,656,589 (+)NCBIT2T-CHM13v2.0
Dynlt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394102,835,900 - 102,862,419 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4102,835,803 - 102,862,791 (+)EnsemblGRCm39 Ensembl
GRCm384102,978,703 - 103,005,594 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4102,978,606 - 103,005,594 (+)EnsemblGRCm38mm10GRCm38
MGSCv374102,658,984 - 102,678,199 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364102,484,311 - 102,502,500 (+)NCBIMGSCv36mm8
Celera4101,351,148 - 101,370,370 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map447.25NCBI
Dynlt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542324,125,928 - 24,148,629 (-)NCBIChiLan1.0ChiLan1.0
DYNLT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21160,081,857 - 160,112,697 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,242,029 - 159,268,784 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0166,000,895 - 66,027,734 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1167,886,416 - 67,912,968 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl167,886,416 - 67,912,968 (+)Ensemblpanpan1.1panPan2
DYNLT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1543,712,690 - 43,737,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl543,714,390 - 43,737,677 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha543,835,605 - 43,861,688 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0543,897,220 - 43,923,175 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl543,899,691 - 43,921,952 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1543,862,936 - 43,888,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0543,808,967 - 43,835,003 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0544,049,279 - 44,075,168 (-)NCBIUU_Cfam_GSD_1.0
Dynlt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505879,681,421 - 79,706,860 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365914,782,695 - 4,789,992 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNLT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6145,783,735 - 145,814,231 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16145,785,670 - 145,814,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DYNLT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12066,323,008 - 66,348,063 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2066,322,485 - 66,345,701 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603351,247,475 - 51,273,498 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dynlt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474228,211,396 - 28,237,646 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474228,217,087 - 28,238,456 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dynlt5
79 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:36
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000038410
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1582212Livw2Liver weight QTL 23.50.0004liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)599016066119085810Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat

Markers in Region
D5Got32  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,744,887 - 117,745,099 (+)MAPPERmRatBN7.2
Rnor_6.05122,508,777 - 122,508,988NCBIRnor6.0
Rnor_5.05126,376,103 - 126,376,314UniSTSRnor5.0
RGSC_v3.45123,915,562 - 123,915,774RGDRGSC3.4
RGSC_v3.45123,915,563 - 123,915,774UniSTSRGSC3.4
RGSC_v3.15123,920,788 - 123,921,000RGD
Celera5116,318,723 - 116,318,934UniSTS
Cytogenetic Map5q34UniSTS
BF387263  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,757,387 - 117,757,560 (+)MAPPERmRatBN7.2
Rnor_6.05122,521,277 - 122,521,449NCBIRnor6.0
Rnor_5.05126,388,603 - 126,388,775UniSTSRnor5.0
RGSC_v3.45123,928,063 - 123,928,235UniSTSRGSC3.4
Celera5116,331,223 - 116,331,395UniSTS
RH 3.4 Map5690.19UniSTS
Cytogenetic Map5q34UniSTS
RH143223  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,734,304 - 117,734,434 (+)MAPPERmRatBN7.2
Rnor_6.05122,498,195 - 122,498,324NCBIRnor6.0
Rnor_5.05126,365,521 - 126,365,650UniSTSRnor5.0
RGSC_v3.45123,904,981 - 123,905,110UniSTSRGSC3.4
Celera5116,308,141 - 116,308,270UniSTS
RH 3.4 Map5755.0UniSTS
Cytogenetic Map5q34UniSTS
RH136701  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,748,767 - 117,748,897 (+)MAPPERmRatBN7.2
Rnor_6.05122,512,657 - 122,512,786NCBIRnor6.0
Rnor_5.05126,379,983 - 126,380,112UniSTSRnor5.0
RGSC_v3.45123,919,443 - 123,919,572UniSTSRGSC3.4
Celera5116,322,603 - 116,322,732UniSTS
Cytogenetic Map5q34UniSTS
RH140437  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,734,145 - 117,734,354 (+)MAPPERmRatBN7.2
Rnor_6.05122,498,036 - 122,498,244NCBIRnor6.0
Rnor_5.05126,365,362 - 126,365,570UniSTSRnor5.0
RGSC_v3.45123,904,822 - 123,905,030UniSTSRGSC3.4
Celera5116,307,982 - 116,308,190UniSTS
RH 3.4 Map5755.0UniSTS
Cytogenetic Map5q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 3 7 93 26 33 8 11 8 2 52 22 87 13 46 25

Sequence


Ensembl Acc Id: ENSRNOT00000038410   ⟹   ENSRNOP00000036168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5117,742,443 - 117,757,588 (+)Ensembl
Rnor_6.0 Ensembl5122,508,388 - 122,521,245 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099871   ⟹   ENSRNOP00000092434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5117,735,439 - 117,757,588 (+)Ensembl
RefSeq Acc Id: NM_001135030   ⟹   NP_001128502
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,971,573 - 122,987,304 (+)NCBI
mRatBN7.25117,742,490 - 117,758,221 (+)NCBI
Rnor_6.05122,506,373 - 122,521,477 (+)NCBI
Rnor_5.05126,366,759 - 126,389,436 (+)NCBI
RGSC_v3.45123,913,159 - 123,928,263 (+)RGD
Celera5116,316,319 - 116,331,423 (+)RGD
Sequence:
RefSeq Acc Id: NM_001415953   ⟹   NP_001402882
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,971,573 - 122,987,304 (+)NCBI
mRatBN7.25117,742,490 - 117,758,221 (+)NCBI
RefSeq Acc Id: XM_006238459   ⟹   XP_006238521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,964,568 - 122,986,671 (+)NCBI
mRatBN7.25117,735,509 - 117,758,221 (+)NCBI
Rnor_6.05122,498,896 - 122,522,110 (+)NCBI
Rnor_5.05126,366,759 - 126,389,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008763889   ⟹   XP_008762111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,971,520 - 122,986,671 (+)NCBI
mRatBN7.25117,741,835 - 117,758,221 (+)NCBI
Rnor_6.05122,503,016 - 122,522,110 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001128502   ⟸   NM_001135030
- Peptide Label: isoform 1
- UniProtKB: D3Z8A1 (UniProtKB/TrEMBL),   A6JRR8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238521   ⟸   XM_006238459
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GJS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762111   ⟸   XM_008763889
- Peptide Label: isoform X2
- UniProtKB: D3Z8A1 (UniProtKB/TrEMBL),   A6JRR8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000036168   ⟸   ENSRNOT00000038410
Ensembl Acc Id: ENSRNOP00000092434   ⟸   ENSRNOT00000099871
RefSeq Acc Id: NP_001402882   ⟸   NM_001415953
- Peptide Label: isoform 2
- UniProtKB: A6JRS0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8A1-F1-model_v2 AlphaFold D3Z8A1 1-173 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311932 AgrOrtholog
BioCyc Gene G2FUF-40512 BioCyc
Ensembl Genes ENSRNOG00000023100 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038410.6 UniProtKB/TrEMBL
  ENSRNOT00000099871.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1140.40 UniProtKB/TrEMBL
InterPro Tctex UniProtKB/TrEMBL
  Tctex-1-like_sf UniProtKB/TrEMBL
KEGG Report rno:362553 UniProtKB/TrEMBL
NCBI Gene 362553 ENTREZGENE
PANTHER DYNEIN LIGHT CHAIN TCTEX-TYPE 5 UniProtKB/TrEMBL
  Tctex UniProtKB/TrEMBL
Pfam Tctex-1 UniProtKB/TrEMBL
PhenoGen Dynlt5 PhenoGen
RatGTEx ENSRNOG00000023100 RatGTEx
UniProt A0A8I6GJS0 ENTREZGENE, UniProtKB/TrEMBL
  A6JRR8 ENTREZGENE, UniProtKB/TrEMBL
  A6JRS0 ENTREZGENE, UniProtKB/TrEMBL
  D3Z8A1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-10-27 Dynlt5  dynein light chain Tctex-type family member 5  Dynlt5  dynein light chain Tctex-type 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2020-10-12 Dynlt5  dynein light chain Tctex-type 5  Tctex1d1  Tctex1 domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tctex1d1  Tctex1 domain containing 1   Tctex1d1_predicted  Tctex1 domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Tctex1d1_predicted  Tctex1 domain containing 1 (predicted)  RGD1311932_predicted  similar to RIKEN cDNA 1700055O19 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1311932_predicted  similar to RIKEN cDNA 1700055O19 (predicted)  LOC362553_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362553_predicted  similar to RIKEN cDNA 1700055O19 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL