Trps1 (transcriptional repressor GATA binding 1) - Rat Genome Database

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Gene: Trps1 (transcriptional repressor GATA binding 1) Rattus norvegicus
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Symbol: Trps1
Name: transcriptional repressor GATA binding 1
RGD ID: 1311883
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and protein domain specific binding activity. Predicted to be involved in several processes, including hair follicle development; negative regulation of transcription by RNA polymerase II; and regulation of chondrocyte differentiation. Predicted to act upstream of or within several processes, including cell surface receptor protein serine/threonine kinase signaling pathway; chondrocyte differentiation; and positive regulation of extrinsic apoptotic signaling pathway via death domain receptors. Predicted to be located in chromatin and nucleus. Predicted to be part of protein-containing complex. Human ortholog(s) of this gene implicated in osteochondrodysplasia; trichorhinophalangeal syndrome type I; and trichorhinophalangeal syndrome type III. Orthologous to human TRPS1 (transcriptional repressor GATA binding 1); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 3,4-methylenedioxymethamphetamine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299897; trichorhinophalangeal syndrome I; trichorhinophalangeal syndrome I (human); trichorhinophalangeal syndrome I homolog; trichorhinophalangeal syndrome I homolog (human); zinc finger transcription factor Trps1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8783,806,121 - 84,032,609 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl783,811,497 - 84,031,786 (-)EnsemblGRCr8
mRatBN7.2781,916,668 - 82,142,733 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl781,921,601 - 82,141,905 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx783,803,208 - 84,022,882 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0786,005,758 - 86,225,442 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0785,848,280 - 86,067,966 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0790,085,895 - 90,320,430 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl790,090,828 - 90,318,221 (-)Ensemblrn6Rnor6.0
Rnor_5.0790,113,508 - 90,343,325 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4786,855,378 - 87,076,668 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera778,810,727 - 79,029,498 (-)NCBICelera
RGSC_v3.1786,876,430 - 87,097,949 (-)NCBI
Cytogenetic Map7q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (EXP)
amphotericin B  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
calciol  (EXP)
chloroprene  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
cobalt dichloride  (EXP)
coumarin  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dichloromethane  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
L-methionine  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tetrachloroethene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Mutations in a new gene, encoding a zinc-finger protein, cause tricho-rhino-phalangeal syndrome type I. Momeni P, etal., Nat Genet. 2000 Jan;24(1):71-4.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12444977   PMID:12885770   PMID:14680804   PMID:15491138   PMID:18363966   PMID:19389374   PMID:21673316   PMID:23133399  


Genomics

Comparative Map Data
Trps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8783,806,121 - 84,032,609 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl783,811,497 - 84,031,786 (-)EnsemblGRCr8
mRatBN7.2781,916,668 - 82,142,733 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl781,921,601 - 82,141,905 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx783,803,208 - 84,022,882 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0786,005,758 - 86,225,442 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0785,848,280 - 86,067,966 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0790,085,895 - 90,320,430 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl790,090,828 - 90,318,221 (-)Ensemblrn6Rnor6.0
Rnor_5.0790,113,508 - 90,343,325 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4786,855,378 - 87,076,668 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera778,810,727 - 79,029,498 (-)NCBICelera
RGSC_v3.1786,876,430 - 87,097,949 (-)NCBI
Cytogenetic Map7q31NCBI
TRPS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388115,408,496 - 115,668,975 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8115,408,496 - 115,809,673 (-)Ensemblhg38GRCh38
GRCh378116,420,724 - 116,681,202 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368116,489,900 - 116,750,402 (-)NCBIBuild 36Build 36hg18NCBI36
Build 348116,489,899 - 116,750,429NCBI
Celera8112,607,772 - 112,867,949 (-)NCBICelera
Cytogenetic Map8q23.3NCBI
HuRef8111,746,115 - 111,962,229 (-)NCBIHuRef
CHM1_18116,461,345 - 116,721,859 (-)NCBICHM1_1
T2T-CHM13v2.08116,535,995 - 116,796,128 (-)NCBIT2T-CHM13v2.0
Trps1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391550,518,149 - 50,754,027 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1550,518,148 - 50,753,859 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381550,654,757 - 50,890,631 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1550,654,752 - 50,890,463 (-)Ensemblmm10GRCm38
MGSCv371550,486,303 - 50,721,587 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361550,490,516 - 50,720,115 (-)NCBIMGSCv36mm8
Celera1552,221,354 - 52,433,937 (-)NCBICelera
Cytogenetic Map15CNCBI
cM Map1519.18NCBI
Trps1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541721,680,116 - 21,913,173 (-)Ensembl
ChiLan1.0NW_00495541721,674,545 - 21,913,137 (-)NCBIChiLan1.0ChiLan1.0
TRPS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27132,802,726 - 133,069,136 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18108,326,565 - 108,588,056 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08112,079,147 - 112,339,567 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18114,626,357 - 114,854,222 (-)NCBIPanPan1.1PanPan1.1panPan2
TRPS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11315,017,180 - 15,273,177 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1315,022,652 - 15,273,666 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1315,005,955 - 15,263,461 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01315,305,244 - 15,563,018 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1315,308,610 - 15,562,778 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11315,053,664 - 15,309,547 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01315,150,277 - 15,407,958 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01315,394,399 - 15,652,945 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Trps1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530323,004,744 - 23,244,503 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647030,432,625 - 30,665,091 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647030,475,779 - 30,666,546 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl422,905,637 - 23,159,546 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1422,905,627 - 23,162,862 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRPS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18110,048,277 - 110,306,342 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8110,050,705 - 110,260,394 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603930,041,925 - 30,303,926 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trps1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476313,798,113 - 14,035,138 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476313,792,649 - 14,035,120 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Trps1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11225,223,812 - 225,450,076 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Trps1
1302 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:158
Count of miRNA genes:131
Interacting mature miRNAs:133
Transcripts:ENSRNOT00000050774
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78211124596700643Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78211124595485241Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
AI447310  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2781,919,710 - 81,919,825 (+)MAPPERmRatBN7.2
Rnor_6.0790,088,938 - 90,089,052NCBIRnor6.0
Rnor_5.0790,116,994 - 90,117,108UniSTSRnor5.0
RGSC_v3.4786,853,488 - 86,853,602UniSTSRGSC3.4
Celera778,808,837 - 78,808,951UniSTS
Cytogenetic Map7q31UniSTS
AU046994  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2782,131,965 - 82,132,073 (+)MAPPERmRatBN7.2
Rnor_6.0790,308,833 - 90,308,940NCBIRnor6.0
Rnor_5.0790,333,937 - 90,334,044UniSTSRnor5.0
RGSC_v3.4787,067,280 - 87,067,387UniSTSRGSC3.4
Celera779,020,126 - 79,020,217UniSTS
Cytogenetic Map7q31UniSTS
BM384689  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2781,921,484 - 81,921,643 (+)MAPPERmRatBN7.2
Rnor_6.0790,090,712 - 90,090,870NCBIRnor6.0
Rnor_5.0790,118,768 - 90,118,926UniSTSRnor5.0
RGSC_v3.4786,855,262 - 86,855,420UniSTSRGSC3.4
Celera778,810,611 - 78,810,769UniSTS
RH 3.4 Map7537.4UniSTS
Cytogenetic Map7q31UniSTS
Trps1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2782,099,874 - 82,100,574 (+)MAPPERmRatBN7.2
Rnor_6.0790,276,663 - 90,277,362NCBIRnor6.0
Rnor_5.0790,301,767 - 90,302,466UniSTSRnor5.0
Celera778,988,051 - 78,988,750UniSTS
Cytogenetic Map7q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000050774   ⟹   ENSRNOP00000039913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl783,811,497 - 84,031,235 (-)Ensembl
mRatBN7.2 Ensembl781,921,601 - 82,141,354 (-)Ensembl
Rnor_6.0 Ensembl790,090,828 - 90,318,221 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094294   ⟹   ENSRNOP00000077022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl783,811,497 - 84,031,392 (-)Ensembl
mRatBN7.2 Ensembl781,921,601 - 82,141,551 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097264   ⟹   ENSRNOP00000088310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl783,811,497 - 84,031,786 (-)Ensembl
mRatBN7.2 Ensembl781,921,601 - 82,141,905 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106247   ⟹   ENSRNOP00000083606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl783,811,497 - 84,031,392 (-)Ensembl
mRatBN7.2 Ensembl781,921,601 - 82,141,551 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110775   ⟹   ENSRNOP00000096700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl783,811,497 - 83,990,522 (-)Ensembl
mRatBN7.2 Ensembl781,921,601 - 82,100,639 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146817   ⟹   ENSRNOP00000110847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl783,811,497 - 84,030,610 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157182   ⟹   ENSRNOP00000110301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl783,811,497 - 84,031,276 (-)Ensembl
RefSeq Acc Id: NM_001134837   ⟹   NP_001128309
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8783,811,497 - 84,031,235 (-)NCBI
mRatBN7.2781,921,601 - 82,141,354 (-)NCBI
Rnor_6.0790,090,828 - 90,318,221 (-)NCBI
Rnor_5.0790,113,508 - 90,343,325 (-)NCBI
RGSC_v3.4786,855,378 - 87,076,668 (-)RGD
Celera778,810,727 - 79,029,498 (-)RGD
Sequence:
RefSeq Acc Id: XM_039078760   ⟹   XP_038934688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8783,806,121 - 84,031,020 (-)NCBI
mRatBN7.2781,916,668 - 82,141,137 (-)NCBI
RefSeq Acc Id: XM_039078761   ⟹   XP_038934689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8783,806,121 - 84,031,019 (-)NCBI
mRatBN7.2781,916,668 - 82,141,137 (-)NCBI
RefSeq Acc Id: XM_039078762   ⟹   XP_038934690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8783,806,121 - 84,031,677 (-)NCBI
mRatBN7.2781,916,668 - 82,141,686 (-)NCBI
RefSeq Acc Id: XM_039078764   ⟹   XP_038934692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8783,806,121 - 84,001,792 (-)NCBI
mRatBN7.2781,916,668 - 82,105,530 (-)NCBI
RefSeq Acc Id: XM_039078765   ⟹   XP_038934693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8783,806,121 - 84,032,609 (-)NCBI
mRatBN7.2781,916,668 - 82,142,733 (-)NCBI
RefSeq Acc Id: XM_039078767   ⟹   XP_038934695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8783,806,121 - 84,030,447 (-)NCBI
mRatBN7.2781,916,668 - 82,140,568 (-)NCBI
RefSeq Acc Id: XM_039078768   ⟹   XP_038934696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8783,806,121 - 84,031,020 (-)NCBI
mRatBN7.2781,916,668 - 82,141,138 (-)NCBI
RefSeq Acc Id: XM_063263244   ⟹   XP_063119314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8783,806,121 - 84,031,675 (-)NCBI
RefSeq Acc Id: NP_001128309   ⟸   NM_001134837
- UniProtKB: A0A8I5ZWX6 (UniProtKB/TrEMBL),   A6HRD1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039913   ⟸   ENSRNOT00000050774
RefSeq Acc Id: XP_038934693   ⟸   XM_039078765
- Peptide Label: isoform X4
- UniProtKB: D3ZEM6 (UniProtKB/TrEMBL),   A6HRD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934690   ⟸   XM_039078762
- Peptide Label: isoform X3
- UniProtKB: A6HRD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934696   ⟸   XM_039078768
- Peptide Label: isoform X6
- UniProtKB: A0A8I5Y133 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934689   ⟸   XM_039078761
- Peptide Label: isoform X2
- UniProtKB: A6HRD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934688   ⟸   XM_039078760
- Peptide Label: isoform X1
- UniProtKB: A6HRD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934695   ⟸   XM_039078767
- Peptide Label: isoform X4
- UniProtKB: D3ZEM6 (UniProtKB/TrEMBL),   A6HRD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934692   ⟸   XM_039078764
- Peptide Label: isoform X4
- UniProtKB: D3ZEM6 (UniProtKB/TrEMBL),   A6HRD1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083606   ⟸   ENSRNOT00000106247
Ensembl Acc Id: ENSRNOP00000096700   ⟸   ENSRNOT00000110775
Ensembl Acc Id: ENSRNOP00000077022   ⟸   ENSRNOT00000094294
Ensembl Acc Id: ENSRNOP00000088310   ⟸   ENSRNOT00000097264
RefSeq Acc Id: XP_063119314   ⟸   XM_063263244
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000110301   ⟸   ENSRNOT00000157182
Ensembl Acc Id: ENSRNOP00000110847   ⟸   ENSRNOT00000146817
Protein Domains
C2H2-type   GATA-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEM6-F1-model_v2 AlphaFold D3ZEM6 1-1281 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695321
Promoter ID:EPDNEW_R5846
Type:multiple initiation site
Name:Trps1_1
Description:transcriptional repressor GATA binding 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0790,318,190 - 90,318,250EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311883 AgrOrtholog
BioCyc Gene G2FUF-33445 BioCyc
Ensembl Genes ENSRNOG00000024998 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050774 ENTREZGENE
  ENSRNOT00000050774.4 UniProtKB/TrEMBL
  ENSRNOT00000094294 ENTREZGENE
  ENSRNOT00000094294.2 UniProtKB/TrEMBL
  ENSRNOT00000097264.2 UniProtKB/TrEMBL
  ENSRNOT00000106247 ENTREZGENE
  ENSRNOT00000106247.2 UniProtKB/TrEMBL
  ENSRNOT00000110775 ENTREZGENE
  ENSRNOT00000110775.2 UniProtKB/TrEMBL
  ENSRNOT00000146817 ENTREZGENE
  ENSRNOT00000146817.1 UniProtKB/TrEMBL
  ENSRNOT00000157182 ENTREZGENE
  ENSRNOT00000157182.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.50.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro Trps1 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
  Znf_GATA UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
KEGG Report rno:299897 UniProtKB/TrEMBL
NCBI Gene 299897 ENTREZGENE
PANTHER PTHR47034 UniProtKB/TrEMBL
  ZINC FINGER TRANSCRIPTION FACTOR TRPS1 UniProtKB/TrEMBL
Pfam GATA UniProtKB/TrEMBL
PhenoGen Trps1 PhenoGen
PRINTS GATAZNFINGER UniProtKB/TrEMBL
PROSITE GATA_ZN_FINGER_1 UniProtKB/TrEMBL
  GATA_ZN_FINGER_2 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024998 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
  ZnF_GATA UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5Y133 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWX6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7M4_RAT UniProtKB/TrEMBL
  A0A8I6B4M4_RAT UniProtKB/TrEMBL
  A0ABK0LVM1_RAT UniProtKB/TrEMBL
  A0ABK0M5P6_RAT UniProtKB/TrEMBL
  A6HRD1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZEM6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-19 Trps1  transcriptional repressor GATA binding 1  Trps1  trichorhinophalangeal syndrome I  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-09-29 Trps1  trichorhinophalangeal syndrome I  Trps1  trichorhinophalangeal syndrome I homolog (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-15 Trps1  trichorhinophalangeal syndrome I homolog (human)  Trps1  trichorhinophalangeal syndrome I (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Trps1  trichorhinophalangeal syndrome I (human)  Trps1_predicted  trichorhinophalangeal syndrome I (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Trps1_predicted  trichorhinophalangeal syndrome I (predicted)      Symbol and Name status set to approved 70820 APPROVED