Cenpl (centromere protein L) - Rat Genome Database

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Gene: Cenpl (centromere protein L) Rattus norvegicus
Analyze
Symbol: Cenpl
Name: centromere protein L
RGD ID: 1311868
Description: Predicted to be located in chromosome, centromeric region and nucleus. Predicted to be part of inner kinetochore. Orthologous to human CENPL (centromere protein L); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CENP-L; LOC289150; MGC125045; RGD1311868; similar to hypothetical gene supported by BC007071
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81375,870,479 - 75,885,466 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1375,870,489 - 75,905,250 (+)EnsemblGRCr8
mRatBN7.21373,337,235 - 73,352,115 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1373,337,257 - 73,352,114 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1375,929,774 - 75,944,633 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01377,213,949 - 77,228,812 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01374,473,845 - 74,488,711 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01378,886,092 - 78,901,025 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1378,886,163 - 78,901,420 (+)Ensemblrn6Rnor6.0
Rnor_5.01383,781,090 - 83,795,519 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41376,629,572 - 76,644,429 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1373,125,459 - 73,140,313 (+)NCBICelera
RGSC_v3.11376,643,752 - 76,658,617 (+)NCBI
Cytogenetic Map13q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Cenpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81375,870,479 - 75,885,466 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1375,870,489 - 75,905,250 (+)EnsemblGRCr8
mRatBN7.21373,337,235 - 73,352,115 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1373,337,257 - 73,352,114 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1375,929,774 - 75,944,633 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01377,213,949 - 77,228,812 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01374,473,845 - 74,488,711 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01378,886,092 - 78,901,025 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1378,886,163 - 78,901,420 (+)Ensemblrn6Rnor6.0
Rnor_5.01383,781,090 - 83,795,519 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41376,629,572 - 76,644,429 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1373,125,459 - 73,140,313 (+)NCBICelera
RGSC_v3.11376,643,752 - 76,658,617 (+)NCBI
Cytogenetic Map13q22NCBI
CENPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381173,799,550 - 173,824,883 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1173,799,550 - 173,824,883 (-)Ensemblhg38GRCh38
GRCh371173,768,688 - 173,794,021 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,035,628 - 172,060,082 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1146,878,160 - 146,903,249 (-)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1144,993,435 - 145,018,524 (-)NCBIHuRef
CHM1_11175,191,131 - 175,216,220 (-)NCBICHM1_1
T2T-CHM13v2.01173,157,718 - 173,183,047 (-)NCBIT2T-CHM13v2.0
Cenpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,898,337 - 160,914,294 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,898,283 - 160,914,294 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381161,070,767 - 161,086,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,070,713 - 161,086,724 (+)Ensemblmm10GRCm38
MGSCv371163,001,023 - 163,016,474 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361162,907,618 - 162,923,003 (+)NCBIMGSCv36mm8
Celera1163,512,244 - 163,527,579 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.75NCBI
Cenpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540613,949,697 - 13,963,827 (-)Ensembl
ChiLan1.0NW_00495540613,949,697 - 13,963,827 (-)NCBIChiLan1.0ChiLan1.0
CENPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2175,901,134 - 75,926,525 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1175,575,208 - 75,605,669 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01149,317,149 - 149,342,267 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11153,020,837 - 153,045,866 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1153,020,837 - 153,045,866 (-)EnsemblpanPan2panpan1.1
CENPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1725,406,881 - 25,430,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl725,407,183 - 25,423,219 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha724,939,511 - 24,959,300 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0725,157,680 - 25,177,472 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl725,162,369 - 25,173,970 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1725,077,025 - 25,096,818 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0725,159,363 - 25,179,077 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0725,304,290 - 25,324,085 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cenpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934496,206,025 - 96,216,549 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648114,052,810 - 14,064,101 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648114,052,816 - 14,063,066 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9116,090,870 - 116,109,483 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19116,090,868 - 116,109,822 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29127,729,546 - 127,744,320 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CENPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12555,361,946 - 55,394,091 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2555,379,756 - 55,393,734 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605556,929,477 - 56,956,463 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cenpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247718,036,701 - 8,051,998 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247718,034,225 - 8,051,451 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cenpl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11040,358,991 - 40,373,218 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cenpl
116 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:198
Count of miRNA genes:159
Interacting mature miRNAs:169
Transcripts:ENSRNOT00000059266
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
RH134937  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21373,351,886 - 73,352,036 (+)MAPPERmRatBN7.2
Rnor_6.01378,900,797 - 78,900,946NCBIRnor6.0
Rnor_5.01383,795,291 - 83,795,440UniSTSRnor5.0
RGSC_v3.41376,644,201 - 76,644,350UniSTSRGSC3.4
Celera1373,140,085 - 73,140,234UniSTS
Cytogenetic Map13q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000059266   ⟹   ENSRNOP00000056033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1375,870,616 - 75,885,463 (+)Ensembl
mRatBN7.2 Ensembl1373,337,257 - 73,352,114 (+)Ensembl
Rnor_6.0 Ensembl1378,886,163 - 78,901,025 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076513   ⟹   ENSRNOP00000068486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1375,870,489 - 75,897,497 (+)Ensembl
mRatBN7.2 Ensembl1373,337,257 - 73,350,918 (+)Ensembl
Rnor_6.0 Ensembl1378,886,163 - 78,901,420 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1378,900,517 - 78,901,025 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129382   ⟹   ENSRNOP00000100501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1375,870,616 - 75,885,465 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000134960   ⟹   ENSRNOP00000109606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1375,870,833 - 75,885,465 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148948   ⟹   ENSRNOP00000107649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1375,870,489 - 75,905,250 (+)Ensembl
RefSeq Acc Id: NM_001033061   ⟹   NP_001028233
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81375,870,603 - 75,885,466 (+)NCBI
mRatBN7.21373,337,257 - 73,352,115 (+)NCBI
Rnor_6.01378,886,163 - 78,901,025 (+)NCBI
Rnor_5.01383,781,090 - 83,795,519 (+)NCBI
RGSC_v3.41376,629,572 - 76,644,429 (+)RGD
Celera1373,125,459 - 73,140,313 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001244761   ⟹   NP_001231690
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81375,870,603 - 75,885,466 (+)NCBI
mRatBN7.21373,337,257 - 73,352,115 (+)NCBI
Rnor_6.01378,886,163 - 78,901,025 (+)NCBI
Rnor_5.01383,781,090 - 83,795,519 (+)NCBI
Celera1373,125,459 - 73,140,313 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250099   ⟹   XP_006250161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81375,870,479 - 75,885,112 (+)NCBI
mRatBN7.21373,337,235 - 73,351,750 (+)NCBI
Rnor_6.01378,886,092 - 78,899,887 (+)NCBI
Rnor_5.01383,781,090 - 83,795,519 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001028233   ⟸   NM_001033061
- Peptide Label: isoform 1
- UniProtKB: A0A0A6YYD9 (UniProtKB/TrEMBL),   A0A8L2QZG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231690   ⟸   NM_001244761
- Peptide Label: isoform 2
- UniProtKB: Q0P5Q6 (UniProtKB/Swiss-Prot),   Q3ZAU7 (UniProtKB/Swiss-Prot),   A6ID73 (UniProtKB/TrEMBL),   A0A8L2QZG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250161   ⟸   XM_006250099
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QZG7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056033   ⟸   ENSRNOT00000059266
Ensembl Acc Id: ENSRNOP00000068486   ⟸   ENSRNOT00000076513
Ensembl Acc Id: ENSRNOP00000107649   ⟸   ENSRNOT00000148948
Ensembl Acc Id: ENSRNOP00000100501   ⟸   ENSRNOT00000129382
Ensembl Acc Id: ENSRNOP00000109606   ⟸   ENSRNOT00000134960

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3ZAU7-F1-model_v2 AlphaFold Q3ZAU7 1-345 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698930
Promoter ID:EPDNEW_R9455
Type:multiple initiation site
Name:Cenpl_1
Description:centromere protein L
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01378,886,176 - 78,886,236EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311868 AgrOrtholog
BioCyc Gene G2FUF-17730 BioCyc
Ensembl Genes ENSRNOG00000038789 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000059266 ENTREZGENE
  ENSRNOT00000129382 ENTREZGENE
  ENSRNOT00000134960 ENTREZGENE
IMAGE_CLONE IMAGE:7122576 IMAGE-MGC_LOAD
  IMAGE:7300924 IMAGE-MGC_LOAD
  IMAGE:7377248 IMAGE-MGC_LOAD
InterPro CENP-L UniProtKB/Swiss-Prot
KEGG Report rno:289150 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109094 IMAGE-MGC_LOAD
  MGC:125045 IMAGE-MGC_LOAD
  MGC:95027 IMAGE-MGC_LOAD
NCBI Gene 289150 ENTREZGENE
PANTHER CENTROMERE PROTEIN L UniProtKB/Swiss-Prot
  PTHR31740 UniProtKB/Swiss-Prot
Pfam CENP-L UniProtKB/Swiss-Prot
PhenoGen Cenpl PhenoGen
RatGTEx ENSRNOG00000038789 RatGTEx
UniProt A0A0A6YYD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QZG7 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LAU3_RAT UniProtKB/TrEMBL
  A0ABK0LGQ0_RAT UniProtKB/TrEMBL
  A0ABK0M6D2_RAT UniProtKB/TrEMBL
  A6ID73 ENTREZGENE, UniProtKB/TrEMBL
  CENPL_RAT UniProtKB/Swiss-Prot
  Q0P5Q6 ENTREZGENE
  Q3ZAU7 ENTREZGENE
UniProt Secondary Q0P5Q6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Cenpl  centromere protein L  RGD1311868  similar to hypothetical gene supported by BC007071  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311868  similar to hypothetical gene supported by BC007071  RGD1311868_predicted  similar to hypothetical gene supported by BC007071 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311868_predicted  similar to hypothetical gene supported by BC007071 (predicted)  LOC289150_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC289150_predicted  similar to hypothetical gene supported by BC007071 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL