Rmc1 (regulator of MON1-CCZ1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rmc1 (regulator of MON1-CCZ1) Rattus norvegicus
Analyze
Symbol: Rmc1
Name: regulator of MON1-CCZ1
RGD ID: 1311805
Description: Predicted to be involved in regulation of autophagy. Predicted to be located in endosome and lysosomal membrane. Predicted to be part of Mon1-Ccz1 complex. Predicted to be active in late endosome membrane. Orthologous to human RMC1 (regulator of MON1-CCZ1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C18orf8; hypothetical protein LOC291784; LOC291784; MGC105615; regulator of MON1-CCZ1 complex; RGD1311805; similar to RIKEN cDNA 2400010D15; uncharacterized protein C18orf8 homolog; uncharacterized protein LOC291784; WD repeat domain 98; Wdr98
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,634,604 - 3,654,519 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl183,634,588 - 3,654,549 (+)EnsemblGRCr8
mRatBN7.2183,359,848 - 3,379,764 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,359,832 - 3,380,795 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx183,589,522 - 3,609,622 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0184,377,218 - 4,397,320 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,618,015 - 3,637,920 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,597,210 - 3,617,160 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,597,240 - 3,617,283 (+)Ensemblrn6Rnor6.0
Rnor_5.0183,606,715 - 3,626,297 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4183,705,351 - 3,725,697 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera183,220,174 - 3,239,604 (+)NCBICelera
RGSC_v3.1183,705,350 - 3,725,693 (+)NCBI
Cytogenetic Map18p13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
autophagy  (IEA)
regulation of autophagy  (IBA,IEA,ISO)

Cellular Component
late endosome  (IEA,ISO)
late endosome membrane  (IBA,IEA,ISO)
lysosomal membrane  (IEA)
Mon1-Ccz1 complex  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17897319   PMID:29038162  


Genomics

Comparative Map Data
Rmc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,634,604 - 3,654,519 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl183,634,588 - 3,654,549 (+)EnsemblGRCr8
mRatBN7.2183,359,848 - 3,379,764 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,359,832 - 3,380,795 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx183,589,522 - 3,609,622 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0184,377,218 - 4,397,320 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,618,015 - 3,637,920 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,597,210 - 3,617,160 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,597,240 - 3,617,283 (+)Ensemblrn6Rnor6.0
Rnor_5.0183,606,715 - 3,626,297 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4183,705,351 - 3,725,697 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera183,220,174 - 3,239,604 (+)NCBICelera
RGSC_v3.1183,705,350 - 3,725,693 (+)NCBI
Cytogenetic Map18p13NCBI
RMC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381823,503,470 - 23,531,822 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1823,503,483 - 23,531,822 (+)Ensemblhg38GRCh38
GRCh371821,083,434 - 21,111,786 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361819,337,460 - 19,365,744 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341819,337,470 - 19,365,740NCBI
Celera1817,899,440 - 17,927,737 (+)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1817,938,382 - 17,966,722 (+)NCBIHuRef
CHM1_11821,010,696 - 21,039,051 (+)NCBICHM1_1
T2T-CHM13v2.01823,697,559 - 23,725,914 (+)NCBIT2T-CHM13v2.0
Rmc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391812,301,746 - 12,331,732 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1812,301,774 - 12,323,715 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381812,168,689 - 12,198,675 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1812,168,717 - 12,190,658 (+)Ensemblmm10GRCm38
MGSCv371812,327,239 - 12,348,483 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361812,312,283 - 12,333,510 (+)NCBIMGSCv36mm8
Celera1812,402,171 - 12,423,371 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map186.15NCBI
Rmc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540211,676,671 - 11,699,709 (+)Ensembl
ChiLan1.0NW_00495540211,676,883 - 11,699,715 (+)NCBIChiLan1.0ChiLan1.0
RMC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21740,933,855 - 40,962,776 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11826,626,446 - 26,655,347 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01816,754,469 - 16,783,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11820,380,579 - 20,409,320 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1820,380,579 - 20,409,314 (+)EnsemblpanPan2panpan1.1
RMC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1764,802,506 - 64,819,383 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl764,802,557 - 64,819,510 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha764,251,180 - 64,273,532 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0764,861,779 - 64,884,381 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl764,861,786 - 64,884,460 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1764,529,664 - 64,552,019 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0764,545,293 - 64,567,879 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0764,850,132 - 64,872,098 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rmc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,832,590 - 60,853,407 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365502,962,545 - 2,984,923 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365502,962,667 - 2,983,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RMC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,376,777 - 108,403,169 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16108,376,763 - 108,403,175 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26101,000,372 - 101,001,998 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RMC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11857,007,889 - 57,036,438 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1857,007,974 - 57,036,231 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605031,758,980 - 31,787,387 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rmc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247708,641,791 - 8,662,285 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247708,641,752 - 8,662,248 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rmc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11531,472,512 - 31,492,636 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rmc1
218 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:16
Count of miRNA genes:15
Interacting mature miRNAs:16
Transcripts:ENSRNOT00000017045
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)18125071266Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18115642423Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18125022372Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat

Markers in Region
RH127929  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,378,991 - 3,379,185 (+)MAPPERmRatBN7.2
Rnor_6.0183,616,390 - 3,616,583NCBIRnor6.0
Rnor_5.0183,625,527 - 3,625,720UniSTSRnor5.0
RGSC_v3.4183,724,927 - 3,725,120UniSTSRGSC3.4
Celera183,238,834 - 3,239,027UniSTS
Cytogenetic Map18p13UniSTS
RH143683  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,380,016 - 3,380,116 (+)MAPPERmRatBN7.2
Rnor_6.0183,617,413 - 3,617,512NCBIRnor6.0
Rnor_5.0183,626,550 - 3,626,649UniSTSRnor5.0
RGSC_v3.4183,725,950 - 3,726,049UniSTSRGSC3.4
Celera183,239,857 - 3,239,956UniSTS
RH 3.4 Map1881.1UniSTS
Cytogenetic Map18p13UniSTS
BE098057  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,375,437 - 3,375,620 (+)MAPPERmRatBN7.2
Rnor_6.0183,612,836 - 3,613,018NCBIRnor6.0
Rnor_5.0183,621,973 - 3,622,155UniSTSRnor5.0
RGSC_v3.4183,721,373 - 3,721,555UniSTSRGSC3.4
Celera183,235,280 - 3,235,462UniSTS
RH 3.4 Map1880.6UniSTS
Cytogenetic Map18p13UniSTS
BE108420  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,374,821 - 3,374,997 (+)MAPPERmRatBN7.2
Rnor_6.0183,612,220 - 3,612,395NCBIRnor6.0
Rnor_5.0183,621,357 - 3,621,532UniSTSRnor5.0
RGSC_v3.4183,720,757 - 3,720,932UniSTSRGSC3.4
Celera183,234,664 - 3,234,839UniSTS
RH 3.4 Map1883.9UniSTS
Cytogenetic Map18p13UniSTS
RH140621  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,379,522 - 3,379,703 (+)MAPPERmRatBN7.2
Rnor_6.0183,616,919 - 3,617,099NCBIRnor6.0
Rnor_5.0183,626,056 - 3,626,236UniSTSRnor5.0
RGSC_v3.4183,725,456 - 3,725,636UniSTSRGSC3.4
Celera183,239,363 - 3,239,543UniSTS
RH 3.4 Map1841.5UniSTS
Cytogenetic Map18p13UniSTS
RH136258  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,379,631 - 3,379,832 (+)MAPPERmRatBN7.2
Rnor_6.0183,617,028 - 3,617,228NCBIRnor6.0
Rnor_5.0183,626,165 - 3,626,365UniSTSRnor5.0
RGSC_v3.4183,725,565 - 3,725,765UniSTSRGSC3.4
Celera183,239,472 - 3,239,672UniSTS
Cytogenetic Map18p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000017045   ⟹   ENSRNOP00000017045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,634,588 - 3,654,549 (+)Ensembl
mRatBN7.2 Ensembl183,359,846 - 3,379,764 (+)Ensembl
Rnor_6.0 Ensembl183,597,240 - 3,617,283 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102404   ⟹   ENSRNOP00000082499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,634,588 - 3,654,549 (+)Ensembl
mRatBN7.2 Ensembl183,359,846 - 3,379,764 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108111   ⟹   ENSRNOP00000088198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,634,609 - 3,654,515 (+)Ensembl
mRatBN7.2 Ensembl183,359,924 - 3,379,764 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116117   ⟹   ENSRNOP00000083364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl183,634,588 - 3,654,549 (+)Ensembl
mRatBN7.2 Ensembl183,359,832 - 3,380,795 (+)Ensembl
RefSeq Acc Id: NM_001009638   ⟹   NP_001009638
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,634,604 - 3,654,519 (+)NCBI
mRatBN7.2183,359,848 - 3,379,764 (+)NCBI
Rnor_6.0183,597,240 - 3,617,160 (+)NCBI
Rnor_5.0183,606,715 - 3,626,297 (+)NCBI
RGSC_v3.4183,705,351 - 3,725,697 (+)RGD
Celera183,220,174 - 3,239,604 (+)RGD
Sequence:
RefSeq Acc Id: XM_039096744   ⟹   XP_038952672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,634,766 - 3,654,519 (+)NCBI
mRatBN7.2183,360,009 - 3,379,764 (+)NCBI
RefSeq Acc Id: XM_039096745   ⟹   XP_038952673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,642,821 - 3,654,519 (+)NCBI
mRatBN7.2183,368,021 - 3,379,764 (+)NCBI
RefSeq Acc Id: XM_039096746   ⟹   XP_038952674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8183,634,766 - 3,654,519 (+)NCBI
mRatBN7.2183,360,008 - 3,379,764 (+)NCBI
RefSeq Acc Id: NP_001009638   ⟸   NM_001009638
- UniProtKB: Q5PPI8 (UniProtKB/TrEMBL),   A6KNG9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017045   ⟸   ENSRNOT00000017045
RefSeq Acc Id: XP_038952674   ⟸   XM_039096746
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038952672   ⟸   XM_039096744
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038952673   ⟸   XM_039096745
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000082499   ⟸   ENSRNOT00000102404
Ensembl Acc Id: ENSRNOP00000083364   ⟸   ENSRNOT00000116117
Ensembl Acc Id: ENSRNOP00000088198   ⟸   ENSRNOT00000108111
Protein Domains
Mic1   Regulator of MON1-CCZ1 complex N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PPI8-F1-model_v2 AlphaFold Q5PPI8 1-657 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700636
Promoter ID:EPDNEW_R11160
Type:initiation region
Name:Wdr98_1
Description:WD repeat domain 98
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0183,597,251 - 3,597,311EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311805 AgrOrtholog
BioCyc Gene G2FUF-8368 BioCyc
Ensembl Genes ENSRNOG00000012597 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017045 ENTREZGENE
  ENSRNOT00000017045.9 UniProtKB/TrEMBL
  ENSRNOT00000102404.2 UniProtKB/TrEMBL
  ENSRNOT00000108111.2 UniProtKB/TrEMBL
  ENSRNOT00000116117.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7317049 IMAGE-MGC_LOAD
InterPro Mic1 UniProtKB/TrEMBL
  RMC1 UniProtKB/TrEMBL
  RMC1_N UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:291784 UniProtKB/TrEMBL
MGC_CLONE MGC:105615 IMAGE-MGC_LOAD
NCBI Gene 291784 ENTREZGENE
PANTHER PTHR12897 UniProtKB/TrEMBL
  REGULATOR OF MON1-CCZ1 COMPLEX UniProtKB/TrEMBL
Pfam Mic1 UniProtKB/TrEMBL
  RMC1_N UniProtKB/TrEMBL
PhenoGen Rmc1 PhenoGen
RatGTEx ENSRNOG00000012597 RatGTEx
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8I5ZZV3_RAT UniProtKB/TrEMBL
  A0A8I6A9A5_RAT UniProtKB/TrEMBL
  A0A8I6G9J1_RAT UniProtKB/TrEMBL
  A6KNG9 ENTREZGENE, UniProtKB/TrEMBL
  Q5PPI8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-12 Rmc1  regulator of MON1-CCZ1  Wdr98  WD repeat domain 98  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-11-08 Wdr98  WD repeat domain 98  RGD1311805  similar to RIKEN cDNA 2400010D15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311805  similar to RIKEN cDNA 2400010D15  RGD1311805_predicted  similar to RIKEN cDNA 2400010D15 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311805_predicted  similar to RIKEN cDNA 2400010D15 (predicted)  LOC291784_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291784_predicted  similar to RIKEN cDNA 2400010D15 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL