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Gene: Tcerg1 (transcription elongation regulator 1) Rattus norvegicus

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Symbol:

Tcerg1

Name:

transcription elongation regulator 1

RGD ID:

1311748

Description:

Predicted to enable several functions, including enzyme binding activity; proline-rich region binding activity; and transcription corepressor activity. Predicted to be involved in RNA processing and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TCERG1 (transcription elongation regulator 1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Ca150; coactivator of 150 kD; LOC307474; transcription elongation regulator 1 (CA150)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	34,756,558 - 34,817,441 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	34,756,725 - 34,817,441 (+)	Ensembl				GRCr8
mRatBN7.2	18	34,505,708 - 34,566,470 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	34,505,751 - 34,566,470 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	34,609,904 - 34,670,616 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	35,328,219 - 35,388,929 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	34,705,128 - 34,765,838 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	36,796,290 - 36,889,966 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	36,829,062 - 36,889,966 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	36,491,800 - 36,552,727 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	35,716,853 - 35,778,041 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	34,100,586 - 34,161,245 (+)	NCBI		Celera
RGSC_v3.1	18	35,752,130 - 35,813,071 (+)	NCBI
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

colorectal cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

buspirone (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

choline (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

DDE (ISO)

Dibutyl phosphate (ISO)

diethylstilbestrol (ISO)

diuron (EXP)

doxorubicin (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

haloperidol (ISO)

hydralazine (ISO)

isobutanol (ISO)

ivermectin (ISO)

L-methionine (ISO)

methapyrilene (EXP)

methidathion (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

Nutlin-3 (ISO)

ozone (ISO)

paracetamol (EXP)

paraquat (ISO)

perfluorohexanesulfonic acid (ISO)

rotenone (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vitamin E (ISO)

vorinostat (ISO)

Yessotoxin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

mRNA processing (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

RNA splicing (ISO)

Cellular Component

nucleoplasm (ISO)

nucleus (IBA,IEA)

Molecular Function

identical protein binding (ISO)

proline-rich region binding (ISO)

protein binding (ISO)

RNA polymerase binding (IBA,IEA)

RNA polymerase II-specific DNA-binding transcription factor binding (ISO)

transcription coregulator activity (IBA)

transcription corepressor activity (ISO)

ubiquitin-like protein conjugating enzyme binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16641246	PMID:17060612	PMID:17915251	PMID:20956529	PMID:22082260	PMID:22658674	PMID:22681889	PMID:22871113	PMID:31505169

Genomics

Comparative Map Data

Tcerg1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	34,756,558 - 34,817,441 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	34,756,725 - 34,817,441 (+)	Ensembl				GRCr8
mRatBN7.2	18	34,505,708 - 34,566,470 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	34,505,751 - 34,566,470 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	34,609,904 - 34,670,616 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	35,328,219 - 35,388,929 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	34,705,128 - 34,765,838 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	36,796,290 - 36,889,966 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	36,829,062 - 36,889,966 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	36,491,800 - 36,552,727 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	35,716,853 - 35,778,041 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	34,100,586 - 34,161,245 (+)	NCBI		Celera
RGSC_v3.1	18	35,752,130 - 35,813,071 (+)	NCBI
Cytogenetic Map	18	p11	NCBI

TCERG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	146,447,330 - 146,511,961 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	146,447,311 - 146,511,963 (+)	Ensembl			hg38	GRCh38
GRCh37	5	145,826,893 - 145,891,524 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	145,807,066 - 145,871,262 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	145,807,086 - 145,871,263	NCBI
Celera	5	141,908,056 - 141,972,523 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI
HuRef	5	140,973,807 - 141,037,975 (+)	NCBI		HuRef
CHM1_1	5	145,259,570 - 145,323,747 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	146,983,202 - 147,047,833 (+)	NCBI		T2T-CHM13v2.0

Tcerg1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	42,644,369 - 42,708,850 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	42,644,552 - 42,708,858 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	42,511,304 - 42,575,785 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	42,511,487 - 42,575,793 (+)	Ensembl			mm10	GRCm38
MGSCv37	18	42,671,141 - 42,735,439 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	42,637,460 - 42,701,758 (+)	NCBI		MGSCv36	mm8
Celera	18	43,879,237 - 43,945,169 (+)	NCBI		Celera
Cytogenetic Map	18	B3	NCBI
cM Map	18	22.66	NCBI

Tcerg1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	7,597,557 - 7,663,207 (-)	Ensembl
ChiLan1.0	NW_004955415	7,597,557 - 7,665,215 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCERG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	141,698,973 - 141,763,292 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	139,838,669 - 139,902,843 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	141,895,031 - 141,959,180 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	147,908,980 - 147,972,277 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	147,908,980 - 147,972,277 (+)	Ensembl			panPan2	panpan1.1

TCERG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	40,855,973 - 40,920,242 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	40,856,045 - 40,919,571 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	37,899,744 - 37,965,565 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	41,312,051 - 41,377,909 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	41,312,109 - 41,376,355 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	38,385,809 - 38,451,602 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	39,195,826 - 39,261,464 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	40,021,300 - 40,087,005 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tcerg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	146,608,153 - 146,673,742 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	8,180,059 - 8,247,850 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	8,182,126 - 8,247,680 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCERG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	147,789,270 - 147,853,320 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	147,789,225 - 147,852,461 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	154,268,895 - 154,345,080 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCERG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	49,026,214 - 49,089,996 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	49,026,250 - 49,090,063 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	28,700,070 - 28,764,005 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tcerg1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	5,922,477 - 5,994,415 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624774	5,925,737 - 5,991,861 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tcerg1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	3,672,524 - 3,731,710 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tcerg1
176 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	625
Count of miRNA genes:	283
Interacting mature miRNAs:	361
Transcripts:	ENSRNOT00000025467
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25071126	83910656	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	22015562	61600538	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	23494057	85487725	Rat
1331742	Bp228	Blood pressure QTL 228	3.88752		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26822186	71822186	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26822186	71822186	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26822186	71822186	Rat
1331727	Bp237	Blood pressure QTL 237	3.053		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	63968306	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26822186	71822186	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26822186	71822186	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26822186	71822186	Rat
1331774	Bp226	Blood pressure QTL 226	4.41065		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	31990891	76990891	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
2303120	Mamtr8	Mammary tumor resistance QTL 8		0.001	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	31610505	85493247	Rat
12880368	Bw187	Body weight QTL 187		0.045	body mass (VT:0001259)	body weight (CMO:0000012)	18	33379158	78379158	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4482648	49482648	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	31990891	76990891	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	7065728	52065728	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	4307354	49307354	Rat
12904069	Cm123	Cardiac mass QTL 123		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	33379158	78379158	Rat
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	7065728	52065728	Rat
1331798	Bp224	Blood pressure QTL 224	3.53873		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
12904070	Cm124	Cardiac mass QTL 124		0.01	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	33379158	78379158	Rat
12904071	Am18	Aortic mass QTL 18		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	33379158	78379158	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26822186	71822186	Rat
61383	Bp47	Blood pressure QTL 47	17.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	31522783	76522783	Rat
12904067	Cm122	Cardiac mass QTL 122		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	33379158	78379158	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	7065728	52065728	Rat
2301417	Bp319	Blood pressure QTL 319		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	33379158	78379158	Rat
12904073	Kidm71	Kidney mass QTL 71		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	33379158	78379158	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	7065728	52065728	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	7065728	52065728	Rat
1331776	Bp225	Blood pressure QTL 225	2.829		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	31610505	77371277	Rat
6903345	Bp349	Blood pressure QTL 349	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	15226101	42690662	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	31990891	76990891	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5460455	42690191	Rat
6903349	Bp351	Blood pressure QTL 351	3.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
631509	Sald2	Serum aldosterone level QTL 2	2.9		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	18	26415821	71415821	Rat
6903351	Bp352	Blood pressure QTL 352	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
631274	Sprol1	Serum protein level QTL 1	5.3		blood total protein amount (VT:0005567)	serum total protein level (CMO:0000661)	18	31644508	79484311	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	44930869	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19553532	85493247	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	31990891	76990891	Rat
61429	Cia17	Collagen induced arthritis QTL 17	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	31610505	72538878	Rat

Markers in Region

RH130687

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,565,936 - 34,566,134 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	36,889,433 - 36,889,630	NCBI	Rnor6.0
Rnor_5.0	18	36,552,194 - 36,552,391	UniSTS	Rnor5.0
RGSC_v3.4	18	35,777,508 - 35,777,705	UniSTS	RGSC3.4
Celera	18	34,160,712 - 34,160,909	UniSTS
Cytogenetic Map	18	p11	UniSTS

Taf2s

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	201,239,298 - 201,239,660 (+)	MAPPER	mRatBN7.2
mRatBN7.2	18	34,565,423 - 34,565,676 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	36,888,920 - 36,889,172	NCBI	Rnor6.0
Rnor_6.0	2	216,320,088 - 216,320,449	NCBI	Rnor6.0
Rnor_5.0	18	36,551,681 - 36,551,933	UniSTS	Rnor5.0
Rnor_5.0	2	245,836,205 - 245,836,566	UniSTS	Rnor5.0
RGSC_v3.4	2	209,414,588 - 209,414,949	UniSTS	RGSC3.4
RGSC_v3.4	18	35,776,995 - 35,777,247	UniSTS	RGSC3.4
Celera	18	34,160,199 - 34,160,451	UniSTS
Celera	2	193,800,130 - 193,800,490	UniSTS
Cytogenetic Map	2	q41	UniSTS
Cytogenetic Map	18	p11	UniSTS

MARC_9990-9991:997195997:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,527,105 - 34,528,197 (+)	MAPPER	mRatBN7.2
mRatBN7.2	2	201,237,526 - 201,237,628 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	216,318,316 - 216,318,417	NCBI	Rnor6.0
Rnor_6.0	18	36,850,635 - 36,851,726	NCBI	Rnor6.0
Rnor_5.0	18	36,513,396 - 36,514,487	UniSTS	Rnor5.0
Rnor_5.0	2	245,834,433 - 245,834,534	UniSTS	Rnor5.0
RGSC_v3.4	2	209,412,816 - 209,412,917	UniSTS	RGSC3.4
RGSC_v3.4	18	35,738,601 - 35,739,692	UniSTS	RGSC3.4
Celera	18	34,121,824 - 34,122,915	UniSTS
Celera	2	193,798,358 - 193,798,459	UniSTS
Cytogenetic Map	2	q41	UniSTS
Cytogenetic Map	18	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_361332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025467 ⟹ ENSRNOP00000025467

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	34,756,725 - 34,817,441 (+)	Ensembl
mRatBN7.2 Ensembl	18	34,505,751 - 34,566,470 (+)	Ensembl
Rnor_6.0 Ensembl	18	36,829,062 - 36,889,966 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086979 ⟹ ENSRNOP00000073243

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	34,756,748 - 34,817,204 (+)	Ensembl
mRatBN7.2 Ensembl	18	34,505,779 - 34,566,231 (+)	Ensembl
Rnor_6.0 Ensembl	18	36,829,090 - 36,889,725 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106966 ⟹ ENSRNOP00000094140

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	34,756,729 - 34,817,203 (+)	Ensembl
mRatBN7.2 Ensembl	18	34,505,751 - 34,566,248 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116807 ⟹ ENSRNOP00000094971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	34,756,740 - 34,817,255 (+)	Ensembl
mRatBN7.2 Ensembl	18	34,505,751 - 34,566,470 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127721 ⟹ ENSRNOP00000108739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	34,759,300 - 34,817,441 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158534 ⟹ ENSRNOP00000109103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	34,756,725 - 34,817,441 (+)	Ensembl

RefSeq Acc Id:

NM_001107390 ⟹ NP_001100860

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,756,725 - 34,817,441 (+)	NCBI
mRatBN7.2	18	34,505,751 - 34,566,470 (+)	NCBI
Rnor_6.0	18	36,829,062 - 36,889,966 (+)	NCBI
Rnor_5.0	18	36,491,800 - 36,552,727 (+)	NCBI
RGSC_v3.4	18	35,716,853 - 35,778,041 (+)	RGD
Celera	18	34,100,586 - 34,161,245 (+)	RGD

Sequence:

show sequence

GAACGCCGGGTCGGCGGGTGGATGAACGCGGCTGTCTGTAATGGCGGAGCGTGGCGGGGACGGA
GGGGAAGGCGAGCGCTTCAACCCGGGGGAGCTGAGGATGGCTCAACAGCAGGCCTTGAGATTCC
GAGGCCCAGCTCCCCCACCAAATGCAGTGATGCGCGGCCCACCACCTCTTATGAGACCACCTCC
TCCTTTCGGCATGATGAGAGGCCCTCCTCCACCACCCAGGCCCCCCTTTGGACGGCCTCCTTTT
GATCCTAATATGCCACCAATGCCTCCCCCAGGAGGAATACCTCCACCCATGGGCCCACCACACC
TCCAGAGACCACCATTCATGCCTCCACCCATGGGAGCTATGCCTCCTCCTCCGGGCATGATGTT
CCCACCAGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCAGCACTGCCCCCCACTGAGGAGATA
TGGGTAGAAAATAAGACTCCAGATGGGAAGGTTTATTACTATAATGCTCGGACTCGTGAATCTG
CATGGACCAAGCCAGATGGAGTTAAGGTTATTCAGCAGTCAGAACTAACACCTATGCTTGCAGC
TCAAGCACAGGTCCAGGCTCAGGCCCAGGCCCAGGCTCAGGCTCAGGCACAGGCACAGGCTCAG
GCCCAGGCCCAGGCCCAGGCCCAGGCTCAGGCAGCCCAGGCTCAGGCCCAAGCGCAAGCACAAG
CTCAGGCCCAGGCTCAGGCCCAGGCCCAGGCTCAGGTCCAAGCACAAGCAGTAGGCGCTCCCAC
CCCTACCACCAGTAGCCCAGCACCTGCAGTGTCCACGTCAGCACCAACATCTACCCCGTCCTCC
ACCACAGCTACCACAACAACTGCTACTTCAGTTGCACAGACAGTATCAACACCCACAACACAAG
ACCAGACCCCAAGTTCTGCTGTTTCAGTTGCCACGCCTACAGTTAGTGTTTCAGCTCCTGCTCC
TACAGCCACACCTGTGCAAACTGTACCCCAGCCGCACCCACAGACGTTACCTCCTGCTGTTCCT
CACTCAGTCCCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCTCCGTTCC
GTGTGCCCCTTCCTGGCATGCCAATTCCACTTCCAGGTGTAGCAATGATGCAAATAGTCAGCTG
CCCGTATGTAAAGACAGTCGCTACCACCAAGACCGGTGTATTACCAGGAATGGCCCCTCCTATA
GTACCCATGATACATCCCCAGGTTGCTATTGCAGCTTCACCTGCTACCTTAGCTGGAGCCACCG
CAGTTTCTGAGTGGACTGAATATAAAACAGCAGATGGGAAGACGTACTATTATAATAATAGAAC
ACTTGAATCAACGTGGGAAAAGCCCCAAGAACTGAAGGAAAAAGAAAAATTAGATGAGAAGATT
AAAGAACCAATTAAGGAGGCATCTGAAGAGCCATTGCCAATGGAGACAGAGGAGGAAGATCCTA
AGGAAGAACCTATAAAGGAGATAAAGGAGGAACCCAAAGAAGAAGAGATGACTGAAGAAGAAAA
GGCTGCCCAGAAGGCAAAGCCAGTAGCTACTACTCCTATTCCTGGTACTCCATGGTGTGTTGTT
TGGACTGGCGATGAGAGGGTCTTCTTTTACAATCCCACCACTCGTCTTTCTATGTGGGACCGAC
CTGATGATTTAATTGGAAGGGCAGATGTTGACAAAATTATTCAAGAGCCCCCTCATAAAAAAGG
ATTAGAAGACATGAAGAAACTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAG
TTCTCGATGAGTGCAATTAAAGAAGAACAAGAATTAATGGAAGAAATGAATGAAGATGAGCCTA
TTAAAGCAAAAAAGCGGAAGAGAGATGATAATAAAGACATTGATTCAGAGAAAGAAGCTGCCAT
GGAAGCTGAAATTAAAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGGCTCGAATGAAGCAG
TTCAAGGACATGCTGCTAGAGAGAGGGGTGTCAGCTTTTTCAACATGGGAGAAGGAGTTGCACA
AGATAGTGTTTGACCCTCGGTACTTGCTTCTCAATCCTAAAGAAAGGAAACAGGTGTTTGATCA
ATATGTCAAGACCAGAGCAGAGGAAGAACGCAGGGAAAAGAAAAACAAAATAATGCAAGCCAAG
GAAGATTTCAAAAAAATGATGGAAGAAGCAAAGTTTAATCCAAGAGCTACTTTTAGTGAATTTG
CTGCCAAACATGCTAAAGATTCAAGATTCAAAGCAATTGAAAAGATGAAAGATAGAGAAGCATT
GTTTAATGAATTCGTGGCAGCTGCAAGGAAGAAAGAAAAAGAAGATTCGAAGACGAGAGGTGAG
AAGATTAAATCAGATTTCTTCGAACTGTTATCTAATCATCACTTGGACAGTCAATCTCGGTGGA
GCAAAGTAAAAGACAAAGTAGAAAGCGACCCACGATACAAAGCAGTGGATAGTTCGTCAATGAG
AGAAGACCTTTTCAAACAGTACATAGAGAAAATAGCTAAGAATTTAGACTCAGAAAAAGAAAAA
GAGCTGGAGAGACAAGCCCGCATTGAGGCAAGCCTTCGAGAACGTGAAAGAGAAGTTCAAAAGG
CACGTTCTGAGCAAACTAAAGAAATTGATCGAGAGAGAGAGCAGCACAAACGAGAAGAAGCTAT
CCAGAATTTCAAGGCTCTTCTGTCTGACATGGTACGTTCTTCAGATGTGTCCTGGTCTGATACT
AGGAGGACCCTCCGGAAGGACCACCGTTGGGAGTCTGGTTCCTTATTGGAAAGAGAGGAGAAAG
AGAAACTCTTTAATGAACATATTGAAGCGCTTACCAAAAAGAAAAGGGAGCACTTTAGGCAGCT
TCTGGATGAGACTTCCGCGATTACCTTAACATCCACGTGGAAAGAAGTGAAGAAAATAATTAAG
GAAGATCCTCGCTGCATTAAGTTCTCCTCCAGTGACAGGAAAAAACAAAGGGAGTTTGAAGAAT
ACATCAGAGACAAATACATCACTGCCAAAGCTGACTTCAGGACACTTTTGAAAGAGACCAAATT
CATTACGTACAGATCCAAAAAGCTAATCCAAGAATCTGATCAGCACCTGAAAGATGTAGAAAAA
ATTTTGCAGAATGACAAACGGTATCTAGTACTGGACTGTGTACCAGAGGAGAGGAGGAAACTCA
TCGTGGCATATGTTGATGACCTGGATCGCCGAGGTCCACCTCCACCTCCCACAGCATCAGAGCC
CACTAGACGATCAACAAAATAATTCTAAATGCCCTTCCCTGGGGGTTGCTGTTAATTGAAAATG
CTTGCATGAGCCAAATTTTCAGGTTTTTACATATATGTGCATTAGTCAACCTATTGCAAAACCA
CCTGATGACAGAAGGAGAAGCAATTGCGGGCAGTCTCTGAACAGAACACTTTGAAAATATTTAA
TGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGACTGTCTCTAGTAAATTTA
AAATCTTGAAGCTAAAAAAATCATCCTTTTCTAAGGTGTGGAAGCCAGTGACTTGGTGATATTT
TTACTAGCAGTGTTACTCAGCAAGACAGGAGAATTTGTGGTAGGAGCTTGGAAATAGCACAGAC
TCCAGGAAAACTGAAGTTGGAGTCTGTTTTTGATTTTGTTTTTTAAGCGGGTAAAAGAGGAAAC
ACTGAATTGGATTCTTCCAGAGACTATGAATATTATAACGGACACACTTTTACCTTTGTCTCTG
AAGCACAGTTTAGTTGTGTTTGTTCATGTAAGCTTTGATTCTCCCCCTCTTGGTTATAGGCCAA
GTCTTGTTTAGCCCAGGAGAAGATGTATTTAGTAATTTCTTCTCAGGTATGAACCACATTCATA
AATAACATGTTGGCCAGAATGGAATCCTGGTTTAAACATTCTTTATTCTCCACTGAATGATCTC
TACCAATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGCGTTCCCTGGAAACTACTTCTGT
TTGAATGTTTGAACTTTTGTTTCTAAAAAGTTTAATTTTAAGATGTTTGAATGTTGAATTTATG
TATTTGAACTACAATAAACCAACCCTTTTATATATGTGGATTGTAAATGATTATTGTTACACAA
TATATTTTTTAAAAACCCTTAGACATGTTTTTTTGTTTGTTTGTTTGCTTGCTTGCTTGCTTGC
TTGCTCGTTTGGTTCGTTGGTTTTTGTTTTGTTTTATTTTTTGAAAAAAAGCATGTGATAATTT
GAGGCAACTGAATCTTAGAATATAGTTTTTAAAGGCTTGACTATAATGTATTTCTAATATAAAA
GATACATTTTTTAG

hide sequence

RefSeq Acc Id:

XM_006254673 ⟹ XP_006254735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,756,558 - 34,817,205 (+)	NCBI
mRatBN7.2	18	34,505,708 - 34,566,285 (+)	NCBI
Rnor_6.0	18	36,829,054 - 36,889,730 (+)	NCBI
Rnor_5.0	18	36,491,800 - 36,552,727 (+)	NCBI

Sequence:

show sequence

CCAATTGGGAACGCCGGGTCGGCGGGTGGATGAACGCGGCTGTCTGTAATGGCGGAGCGTGGCG
GGGACGGAGGGGAAGGCGAGCGCTTCAACCCGGGGGAGCTGAGGATGGCTCAACAGCAGGCCTT
GAGATTCCGAGGCCCAGCTCCCCCACCAAATGCAGTGATGCGCGGCCCACCACCTCTTATGAGA
CCACCTCCTCCTTTCGGCATGATGAGAGGCCCTCCTCCACCACCCAGGCCCCCCTTTGGACGGC
CTCCTTTTGATCCTAATATGCCACCAATGCCTCCCCCAGGAGGAATACCTCCACCCATGGGCCC
ACCACACCTCCAGAGACCACCATTCATGCCTCCACCCATGGGAGCTATGCCTCCTCCTCCGGGC
ATGATGTTCCCACCAGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCAGCACTGCCCCCCACTG
AGGAGATATGGGTAGAAAATAAGACTCCAGATGGGAAGGTTTATTACTATAATGCTCGGACTCG
TGAATCTGCATGGACCAAGCCAGATGGAGTTAAGGTTATTCAGCAGTCAGAACTAACACCTATG
CTTGCAGCTCAAGCACAGGTCCAGGCTCAGGCCCAGGCCCAGGCTCAGGCTCAGGCACAGGCAC
AGGCTCAGGCCCAGGCCCAGGCCCAGGCCCAGGCTCAGGCAGCCCAGGCTCAGGCCCAAGCGCA
AGCACAAGCTCAGGCCCAGGCTCAGGCCCAGGCCCAGGCTCAGGTCCAAGCACAAGCAGTAGGC
GCTCCCACCCCTACCACCAGTAGCCCAGCACCTGCAGTGTCCACGTCAGCACCAACATCTACCC
CGTCCTCCACCACAGCTACCACAACAACTGCTACTTCAGTTGCACAGACAGTATCAACACCCAC
AACACAAGACCAGACCCCAAGTTCTGCTGTTTCAGTTGCCACGCCTACAGTTAGTGTTTCAGCT
CCTGCTCCTACAGCCACACCTGTGCAAACTGTACCCCAGCCGCACCCACAGACGTTACCTCCTG
CTGTTCCTCACTCAGTCCCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCC
TCCGTTCCGTGTGCCCCTTCCTGGCATGCCAATTCCACTTCCAGGTGTAGCAATGATGCAAATA
GTCAGCTGCCCGTATGTAAAGACAGTCGCTACCACCAAGACCGGTGTATTACCAGGAATGGCCC
CTCCTATAGTACCCATGATACATCCCCAGGTTGCTATTGCAGCTTCACCTGCTACCTTAGCTGG
AGCCACCGCAGTTTCTGAGTGGACTGAATATAAAACAGCAGATGGGAAGACGTACTATTATAAT
AATAGAACACTTGAATCAACGTGGGAAAAGCCCCAAGAACTGAAGGAAAAAGAAAAATTAGATG
AGAAGATTAAAGAACCAATTAAGGAGGCATCTGAAGAGCCATTGCCAATGGAGACAGAGGAGGA
AGATCCTAAGGAAGAACCTATAAAGGAGATAAAGGAGGAACCCAAAGAAGAAGAGATGACTGAA
GAAGAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACTACTCCTATTCCTGGTACTCCATGGT
GTGTTGTTTGGACTGGCGATGAGAGGGTCTTCTTTTACAATCCCACCACTCGTCTTTCTATGTG
GGACCGACCTGATGATTTAATTGGAAGGGCAGATGTTGACAAAATTATTCAAGAGCCCCCTCAT
AAAAAAGGATTAGAAGACATGAAGAAACTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAA
AGTGGCAGTTCTCGATGAGTGCAATTAAAGAAGAACAAGAATTAATGGAAGAAATGAATGAAGA
TGAGCCTATTAAAGCAAAAAAGCGGAAGAGAATGTCAAAGAAGCCCTTTATGTGGATTGCCCGA
GCTTCTCTATTTAGGAGAGATGATAATAAAGACATTGATTCAGAGAAAGAAGCTGCCATGGAAG
CTGAAATTAAAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGGCTCGAATGAAGCAGTTCAA
GGACATGCTGCTAGAGAGAGGGGTGTCAGCTTTTTCAACATGGGAGAAGGAGTTGCACAAGATA
GTGTTTGACCCTCGGTACTTGCTTCTCAATCCTAAAGAAAGGAAACAGGTGTTTGATCAATATG
TCAAGACCAGAGCAGAGGAAGAACGCAGGGAAAAGAAAAACAAAATAATGCAAGCCAAGGAAGA
TTTCAAAAAAATGATGGAAGAAGCAAAGTTTAATCCAAGAGCTACTTTTAGTGAATTTGCTGCC
AAACATGCTAAAGATTCAAGATTCAAAGCAATTGAAAAGATGAAAGATAGAGAAGCATTGTTTA
ATGAATTCGTGGCAGCTGCAAGGAAGAAAGAAAAAGAAGATTCGAAGACGAGAGGTGAGAAGAT
TAAATCAGATTTCTTCGAACTGTTATCTAATCATCACTTGGACAGTCAATCTCGGTGGAGCAAA
GTAAAAGACAAAGTAGAAAGCGACCCACGATACAAAGCAGTGGATAGTTCGTCAATGAGAGAAG
ACCTTTTCAAACAGTACATAGAGAAAATAGCTAAGAATTTAGACTCAGAAAAAGAAAAAGAGCT
GGAGAGACAAGCCCGCATTGAGGCAAGCCTTCGAGAACGTGAAAGAGAAGTTCAAAAGGCACGT
TCTGAGCAAACTAAAGAAATTGATCGAGAGAGAGAGCAGCACAAACGAGAAGAAGCTATCCAGA
ATTTCAAGGCTCTTCTGTCTGACATGGTACGTTCTTCAGATGTGTCCTGGTCTGATACTAGGAG
GACCCTCCGGAAGGACCACCGTTGGGAGTCTGGTTCCTTATTGGAAAGAGAGGAGAAAGAGAAA
CTCTTTAATGAACATATTGAAGCGCTTACCAAAAAGAAAAGGGAGCACTTTAGGCAGCTTCTGG
ATGAGACTTCCGCGATTACCTTAACATCCACGTGGAAAGAAGTGAAGAAAATAATTAAGGAAGA
TCCTCGCTGCATTAAGTTCTCCTCCAGTGACAGGAAAAAACAAAGGGAGTTTGAAGAATACATC
AGAGACAAATACATCACTGCCAAAGCTGACTTCAGGACACTTTTGAAAGAGACCAAATTCATTA
CGTACAGATCCAAAAAGCTAATCCAAGAATCTGATCAGCACCTGAAAGATGTAGAAAAAATTTT
GCAGAATGACAAACGGTATCTAGTACTGGACTGTGTACCAGAGGAGAGGAGGAAACTCATCGTG
GCATATGTTGATGACCTGGATCGCCGAGGTCCACCTCCACCTCCCACAGCATCAGAGCCCACTA
GACGATCAACAAAATAATTCTAAATGCCCTTCCCTGGGGGTTGCTGTTAATTGAAAATGCTTGC
ATGAGCCAAATTTTCAGGTTTTTACATATATGTGCATTAGTCAACCTATTGCAAAACCACCTGA
TGACAGAAGGAGAAGCAATTGCGGGCAGTCTCTGAACAGAACACTTTGAAAATATTTAATGCTT
TTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGACTGTCTCTAGTAAATTTAAAATC
TTGAAGCTAAAAAAATCATCCTTTTCTAAGGTGTGGAAGCCAGTGACTTGGTGATATTTTTACT
AGCAGTGTTACTCAGCAAGACAGGAGAATTTGTGGTAGGAGCTTGGAAATAGCACAGACTCCAG
GAAAACTGAAGTTGGAGTCTGTTTTTGATTTTGTTTTTTAAGCGGGTAAAAGAGGAAACACTGA
ATTGGATTCTTCCAGAGACTATGAATATTATAACGGACACACTTTTACCTTTGTCTCTGAAGCA
CAGTTTAGTTGTGTTTGTTCATGTAAGCTTTGATTCTCCCCCTCTTGGTTATAGGCCAAGTCTT
GTTTAGCCCAGGAGAAGATGTATTTAGTAATTTCTTCTCAGGTATGAACCACATTCATAAATAA
CATGTTGGCCAGAATGGAATCCTGGTTTAAACATTCTTTATTCTCCACTGAATGATCTCTACCA
ATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGCGTTCCCTGGAAACTACTTCTGTTTGAA
TGTTTGAACTTTTGTTTCTAAAAAGTTTAATTTTAAGATGTTTGAATGTTGAATTTATGTATTT
GAACTACAATAAACCAACCCTTTTATATA

hide sequence

RefSeq Acc Id:

XM_006254674 ⟹ XP_006254736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,756,683 - 34,817,205 (+)	NCBI
mRatBN7.2	18	34,505,708 - 34,566,234 (+)	NCBI
Rnor_6.0	18	36,829,054 - 36,889,730 (+)	NCBI
Rnor_5.0	18	36,491,800 - 36,552,727 (+)	NCBI

Sequence:

show sequence

CCAATTGGGAACGCCGGGTCGGCGGGTGGATGAACGCGGCTGTCTGTAATGGCGGAGCGTGGCG
GGGACGGAGGGGAAGGCGAGCGCTTCAACCCGGGGGAGCTGAGGATGGCTCAACAGCAGGCCTT
GAGATTCCGAGGCCCAGCTCCCCCACCAAATGCAGTGATGCGCGGCCCACCACCTCTTATGAGA
CCACCTCCTCCTTTCGGCATGATGAGAGGCCCTCCTCCACCACCCAGGCCCCCCTTTGGACGGC
CTCCTTTTGATCCTAATATGCCACCAATGCCTCCCCCAGGAGGAATACCTCCACCCATGGGCCC
ACCACACCTCCAGAGACCACCATTCATGCCTCCACCCATGGGAGCTATGCCTCCTCCTCCGGGC
ATGATGTTCCCACCAGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCAGCACTGCCCCCCACTG
AGGAGATATGGGTAGAAAATAAGACTCCAGATGGGAAGGTTTATTACTATAATGCTCGGACTCG
TGAATCTGCATGGACCAAGCCAGATGGAGTTAAGGTTATTCAGCAGTCAGAACTAACACCTATG
CTTGCAGCTCAAGCACAGGTCCAGGCTCAGGCCCAGGCCCAGGCTCAGGCTCAGGCACAGGCAC
AGGCTCAGGCCCAGGCCCAGGCCCAGGCCCAGGCTCAGGCAGCCCAGGCTCAGGCCCAAGCGCA
AGCACAAGCTCAGGCCCAGGCTCAGGCCCAGGCCCAGGCTCAGGTCCAAGCACAAGCAGTAGGC
GCTCCCACCCCTACCACCAGTAGCCCAGCACCTGCAGTGTCCACGTCAGCACCAACATCTACCC
CGTCCTCCACCACAGCTACCACAACAACTGCTACTTCAGTTGCACAGACAGTATCAACACCCAC
AACACAAGACCAGACCCCAAGTTCTGCTGTTTCAGTTGCCACGCCTACAGTTAGTGTTTCAGCT
CCTGCTCCTACAGCCACACCTGTGCAAACTGTACCCCAGCCGCACCCACAGACGTTACCTCCTG
CTGTTCCTCACTCAGTCCCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCC
TCCGTTCCGTGTGCCCCTTCCTGGCATGCCAATTCCACTTCCAGGTGTATTACCAGGAATGGCC
CCTCCTATAGTACCCATGATACATCCCCAGGTTGCTATTGCAGCTTCACCTGCTACCTTAGCTG
GAGCCACCGCAGTTTCTGAGTGGACTGAATATAAAACAGCAGATGGGAAGACGTACTATTATAA
TAATAGAACACTTGAATCAACGTGGGAAAAGCCCCAAGAACTGAAGGAAAAAGAAAAATTAGAT
GAGAAGATTAAAGAACCAATTAAGGAGGCATCTGAAGAGCCATTGCCAATGGAGACAGAGGAGG
AAGATCCTAAGGAAGAACCTATAAAGGAGATAAAGGAGGAACCCAAAGAAGAAGAGATGACTGA
AGAAGAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACTACTCCTATTCCTGGTACTCCATGG
TGTGTTGTTTGGACTGGCGATGAGAGGGTCTTCTTTTACAATCCCACCACTCGTCTTTCTATGT
GGGACCGACCTGATGATTTAATTGGAAGGGCAGATGTTGACAAAATTATTCAAGAGCCCCCTCA
TAAAAAAGGATTAGAAGACATGAAGAAACTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAA
AAGTGGCAGTTCTCGATGAGTGCAATTAAAGAAGAACAAGAATTAATGGAAGAAATGAATGAAG
ATGAGCCTATTAAAGCAAAAAAGCGGAAGAGAATGTCAAAGAAGCCCTTTATGTGGATTGCCCG
AGCTTCTCTATTTAGGAGAGATGATAATAAAGACATTGATTCAGAGAAAGAAGCTGCCATGGAA
GCTGAAATTAAAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGGCTCGAATGAAGCAGTTCA
AGGACATGCTGCTAGAGAGAGGGGTGTCAGCTTTTTCAACATGGGAGAAGGAGTTGCACAAGAT
AGTGTTTGACCCTCGGTACTTGCTTCTCAATCCTAAAGAAAGGAAACAGGTGTTTGATCAATAT
GTCAAGACCAGAGCAGAGGAAGAACGCAGGGAAAAGAAAAACAAAATAATGCAAGCCAAGGAAG
ATTTCAAAAAAATGATGGAAGAAGCAAAGTTTAATCCAAGAGCTACTTTTAGTGAATTTGCTGC
CAAACATGCTAAAGATTCAAGATTCAAAGCAATTGAAAAGATGAAAGATAGAGAAGCATTGTTT
AATGAATTCGTGGCAGCTGCAAGGAAGAAAGAAAAAGAAGATTCGAAGACGAGAGGTGAGAAGA
TTAAATCAGATTTCTTCGAACTGTTATCTAATCATCACTTGGACAGTCAATCTCGGTGGAGCAA
AGTAAAAGACAAAGTAGAAAGCGACCCACGATACAAAGCAGTGGATAGTTCGTCAATGAGAGAA
GACCTTTTCAAACAGTACATAGAGAAAATAGCTAAGAATTTAGACTCAGAAAAAGAAAAAGAGC
TGGAGAGACAAGCCCGCATTGAGGCAAGCCTTCGAGAACGTGAAAGAGAAGTTCAAAAGGCACG
TTCTGAGCAAACTAAAGAAATTGATCGAGAGAGAGAGCAGCACAAACGAGAAGAAGCTATCCAG
AATTTCAAGGCTCTTCTGTCTGACATGGTACGTTCTTCAGATGTGTCCTGGTCTGATACTAGGA
GGACCCTCCGGAAGGACCACCGTTGGGAGTCTGGTTCCTTATTGGAAAGAGAGGAGAAAGAGAA
ACTCTTTAATGAACATATTGAAGCGCTTACCAAAAAGAAAAGGGAGCACTTTAGGCAGCTTCTG
GATGAGACTTCCGCGATTACCTTAACATCCACGTGGAAAGAAGTGAAGAAAATAATTAAGGAAG
ATCCTCGCTGCATTAAGTTCTCCTCCAGTGACAGGAAAAAACAAAGGGAGTTTGAAGAATACAT
CAGAGACAAATACATCACTGCCAAAGCTGACTTCAGGACACTTTTGAAAGAGACCAAATTCATT
ACGTACAGATCCAAAAAGCTAATCCAAGAATCTGATCAGCACCTGAAAGATGTAGAAAAAATTT
TGCAGAATGACAAACGGTATCTAGTACTGGACTGTGTACCAGAGGAGAGGAGGAAACTCATCGT
GGCATATGTTGATGACCTGGATCGCCGAGGTCCACCTCCACCTCCCACAGCATCAGAGCCCACT
AGACGATCAACAAAATAATTCTAAATGCCCTTCCCTGGGGGTTGCTGTTAATTGAAAATGCTTG
CATGAGCCAAATTTTCAGGTTTTTACATATATGTGCATTAGTCAACCTATTGCAAAACCACCTG
ATGACAGAAGGAGAAGCAATTGCGGGCAGTCTCTGAACAGAACACTTTGAAAATATTTAATGCT
TTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGACTGTCTCTAGTAAATTTAAAAT
CTTGAAGCTAAAAAAATCATCCTTTTCTAAGGTGTGGAAGCCAGTGACTTGGTGATATTTTTAC
TAGCAGTGTTACTCAGCAAGACAGGAGAATTTGTGGTAGGAGCTTGGAAATAGCACAGACTCCA
GGAAAACTGAAGTTGGAGTCTGTTTTTGATTTTGTTTTTTAAGCGGGTAAAAGAGGAAACACTG
AATTGGATTCTTCCAGAGACTATGAATATTATAACGGACACACTTTTACCTTTGTCTCTGAAGC
ACAGTTTAGTTGTGTTTGTTCATGTAAGCTTTGATTCTCCCCCTCTTGGTTATAGGCCAAGTCT
TGTTTAGCCCAGGAGAAGATGTATTTAGTAATTTCTTCTCAGGTATGAACCACATTCATAAATA
ACATGTTGGCCAGAATGGAATCCTGGTTTAAACATTCTTTATTCTCCACTGAATGATCTCTACC
AATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGCGTTCCCTGGAAACTACTTCTGTTTGA
ATGTTTGAACTTTTGTTTCTAAAAAGTTTAATTTTAAGATGTTTGAATGTTGAATTTATGTATT
TGAACTACAATAAACCAACCCTTTTATATA

hide sequence

RefSeq Acc Id:

XM_006254675 ⟹ XP_006254737

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,756,683 - 34,817,205 (+)	NCBI
mRatBN7.2	18	34,505,708 - 34,565,390 (+)	NCBI
Rnor_6.0	18	36,829,054 - 36,889,730 (+)	NCBI
Rnor_5.0	18	36,491,800 - 36,552,727 (+)	NCBI

Sequence:

show sequence

CCAATTGGGAACGCCGGGTCGGCGGGTGGATGAACGCGGCTGTCTGTAATGGCGGAGCGTGGCG
GGGACGGAGGGGAAGGCGAGCGCTTCAACCCGGGGGAGCTGAGGATGGCTCAACAGCAGGCCTT
GAGATTCCGAGGCCCAGCTCCCCCACCAAATGCAGTGATGCGCGGCCCACCACCTCTTATGAGA
CCACCTCCTCCTTTCGGCATGATGAGAGGCCCTCCTCCACCACCCAGGCCCCCCTTTGGACGGC
CTCCTTTTGATCCTAATATGCCACCAATGCCTCCCCCAGGAGGAATACCTCCACCCATGGGCCC
ACCACACCTCCAGAGACCACCATTCATGCCTCCACCCATGGGAGCTATGCCTCCTCCTCCGGGC
ATGATGTTCCCACCAGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCAGCACTGCCCCCCACTG
AGGAGATATGGGTAGAAAATAAGACTCCAGATGGGAAGGTTTATTACTATAATGCTCGGACTCG
TGAATCTGCATGGACCAAGCCAGATGGAGTTAAGGTTATTCAGCAGTCAGAACTAACACCTATG
CTTGCAGCTCAAGCACAGGTCCAGGCTCAGGCCCAGGCCCAGGCTCAGGCTCAGGCACAGGCAC
AGGCTCAGGCCCAGGCCCAGGCCCAGGCCCAGGCTCAGGCAGCCCAGGCTCAGGCCCAAGCGCA
AGCACAAGCTCAGGCCCAGGCTCAGGCCCAGGCCCAGGCTCAGGTCCAAGCACAAGCAGTAGGC
GCTCCCACCCCTACCACCAGTAGCCCAGCACCTGCAGTGTCCACGTCAGCACCAACATCTACCC
CGTCCTCCACCACAGCTACCACAACAACTGCTACTTCAGTTGCACAGACAGTATCAACACCCAC
AACACAAGACCAGACCCCAAGTTCTGCTGTTTCAGTTGCCACGCCTACAGTTAGTGTTTCAGCT
CCTGCTCCTACAGCCACACCTGTGCAAACTGTACCCCAGCCGCACCCACAGACGTTACCTCCTG
CTGTTCCTCACTCAGTCCCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCC
TCCGTTCCGTGTGCCCCTTCCTGGCATGCCAATTCCACTTCCAGGTGTATTACCAGGAATGGCC
CCTCCTATAGTACCCATGATACATCCCCAGGTTGCTATTGCAGCTTCACCTGCTACCTTAGCTG
GAGCCACCGCAGTTTCTGAGTGGACTGAATATAAAACAGCAGATGGGAAGACGTACTATTATAA
TAATAGAACACTTGAATCAACGTGGGAAAAGCCCCAAGAACTGAAGGAAAAAGAAAAATTAGAT
GAGAAGATTAAAGAACCAATTAAGGAGGCATCTGAAGAGCCATTGCCAATGGAGACAGAGGAGG
AAGATCCTAAGGAAGAACCTATAAAGGAGATAAAGGAGGAACCCAAAGAAGAAGAGATGACTGA
AGAAGAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACTACTCCTATTCCTGGTACTCCATGG
TGTGTTGTTTGGACTGGCGATGAGAGGGTCTTCTTTTACAATCCCACCACTCGTCTTTCTATGT
GGGACCGACCTGATGATTTAATTGGAAGGGCAGATGTTGACAAAATTATTCAAGAGCCCCCTCA
TAAAAAAGGATTAGAAGACATGAAGAAACTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAA
AAGTGGCAGTTCTCGATGAGTGCAATTAAAGAAGAACAAGAATTAATGGAAGAAATGAATGAAG
ATGAGCCTATTAAAGCAAAAAAGCGGAAGAGAGATGATAATAAAGACATTGATTCAGAGAAAGA
AGCTGCCATGGAAGCTGAAATTAAAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGGCTCGA
ATGAAGCAGTTCAAGGACATGCTGCTAGAGAGAGGGGTGTCAGCTTTTTCAACATGGGAGAAGG
AGTTGCACAAGATAGTGTTTGACCCTCGGTACTTGCTTCTCAATCCTAAAGAAAGGAAACAGGT
GTTTGATCAATATGTCAAGACCAGAGCAGAGGAAGAACGCAGGGAAAAGAAAAACAAAATAATG
CAAGCCAAGGAAGATTTCAAAAAAATGATGGAAGAAGCAAAGTTTAATCCAAGAGCTACTTTTA
GTGAATTTGCTGCCAAACATGCTAAAGATTCAAGATTCAAAGCAATTGAAAAGATGAAAGATAG
AGAAGCATTGTTTAATGAATTCGTGGCAGCTGCAAGGAAGAAAGAAAAAGAAGATTCGAAGACG
AGAGGTGAGAAGATTAAATCAGATTTCTTCGAACTGTTATCTAATCATCACTTGGACAGTCAAT
CTCGGTGGAGCAAAGTAAAAGACAAAGTAGAAAGCGACCCACGATACAAAGCAGTGGATAGTTC
GTCAATGAGAGAAGACCTTTTCAAACAGTACATAGAGAAAATAGCTAAGAATTTAGACTCAGAA
AAAGAAAAAGAGCTGGAGAGACAAGCCCGCATTGAGGCAAGCCTTCGAGAACGTGAAAGAGAAG
TTCAAAAGGCACGTTCTGAGCAAACTAAAGAAATTGATCGAGAGAGAGAGCAGCACAAACGAGA
AGAAGCTATCCAGAATTTCAAGGCTCTTCTGTCTGACATGGTACGTTCTTCAGATGTGTCCTGG
TCTGATACTAGGAGGACCCTCCGGAAGGACCACCGTTGGGAGTCTGGTTCCTTATTGGAAAGAG
AGGAGAAAGAGAAACTCTTTAATGAACATATTGAAGCGCTTACCAAAAAGAAAAGGGAGCACTT
TAGGCAGCTTCTGGATGAGACTTCCGCGATTACCTTAACATCCACGTGGAAAGAAGTGAAGAAA
ATAATTAAGGAAGATCCTCGCTGCATTAAGTTCTCCTCCAGTGACAGGAAAAAACAAAGGGAGT
TTGAAGAATACATCAGAGACAAATACATCACTGCCAAAGCTGACTTCAGGACACTTTTGAAAGA
GACCAAATTCATTACGTACAGATCCAAAAAGCTAATCCAAGAATCTGATCAGCACCTGAAAGAT
GTAGAAAAAATTTTGCAGAATGACAAACGGTATCTAGTACTGGACTGTGTACCAGAGGAGAGGA
GGAAACTCATCGTGGCATATGTTGATGACCTGGATCGCCGAGGTCCACCTCCACCTCCCACAGC
ATCAGAGCCCACTAGACGATCAACAAAATAATTCTAAATGCCCTTCCCTGGGGGTTGCTGTTAA
TTGAAAATGCTTGCATGAGCCAAATTTTCAGGTTTTTACATATATGTGCATTAGTCAACCTATT
GCAAAACCACCTGATGACAGAAGGAGAAGCAATTGCGGGCAGTCTCTGAACAGAACACTTTGAA
AATATTTAATGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGACTGTCTCTA
GTAAATTTAAAATCTTGAAGCTAAAAAAATCATCCTTTTCTAAGGTGTGGAAGCCAGTGACTTG
GTGATATTTTTACTAGCAGTGTTACTCAGCAAGACAGGAGAATTTGTGGTAGGAGCTTGGAAAT
AGCACAGACTCCAGGAAAACTGAAGTTGGAGTCTGTTTTTGATTTTGTTTTTTAAGCGGGTAAA
AGAGGAAACACTGAATTGGATTCTTCCAGAGACTATGAATATTATAACGGACACACTTTTACCT
TTGTCTCTGAAGCACAGTTTAGTTGTGTTTGTTCATGTAAGCTTTGATTCTCCCCCTCTTGGTT
ATAGGCCAAGTCTTGTTTAGCCCAGGAGAAGATGTATTTAGTAATTTCTTCTCAGGTATGAACC
ACATTCATAAATAACATGTTGGCCAGAATGGAATCCTGGTTTAAACATTCTTTATTCTCCACTG
AATGATCTCTACCAATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGCGTTCCCTGGAAAC
TACTTCTGTTTGAATGTTTGAACTTTTGTTTCTAAAAAGTTTAATTTTAAGATGTTTGAATGTT
GAATTTATGTATTTGAACTACAATAAACCAACCCTTTTATATA

hide sequence

RefSeq Acc Id:

XM_017600960 ⟹ XP_017456449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,767,565 - 34,817,205 (+)	NCBI
mRatBN7.2	18	34,516,577 - 34,566,285 (+)	NCBI
Rnor_6.0	18	36,841,204 - 36,889,730 (+)	NCBI

Sequence:

show sequence

TGAAACGGTAAACCAGTCCCAGTTAAATGTTTTCCTTTATAAGAGCTGCCTTGAACTTCTTGTC
CCTTCCTTGCAGCAATGAAACCTTAACTAAGACAGAAGTTGGTACCAGGGACTGGGGAATTGCT
GTCATAGGCCTGACTGTGATTATTTTTGGAGAAATGTGGATTTGGGGACTTTAGATTTGTAAAA
GACTGGAATACTTTAAGTGGGGCTAAATGGGCCATACTAGTAGGAACATGGAGACAGTTATACT
GAGGGTGAATTGGAATTTGGGGGCCTGGCTGTAGAGGTTTCGGAGGAGAATTTTAGTATGTTGC
CTAGAGATTGTTCTTGTTATGTTTTGGTGAAGAATGGCTGCTTTTGCCCTCATTTGAAGAGTCT
GCCTGAGGCTAAGATGAAGAGATTTAGATTTAATTGCTTTGGCCAGGGAAATTTCAAGACAGTC
TAGCATAGATTATCCTGTGGATCATTGTTATGAAGAGCCTTTTGATCAGATGTAGCAAACTGAG
AAAGGAAAAATACAAAACGTTTGGTTCAAAAGTTAAAGGGGCACCAGTAAGTGGAATGGAGCTA
AATCCAAGGATATTCAAGGATGTAAAATGGAATTAAAGAAGTGGTGCCCTTGGGGCATGATCCC
ACCCAGCTAAACTTAATGAGTTTACAGTTGTATGAGGATAGTTAAATCATGTTATGTGTTATTT
TGCACTGATTGTTGTTTTCATTTGGACATAAGGAGATATGATCATGTGTCAGACTGACAAAGGA
TGAGTTGTGATGGCTATTCTCGGTTGTCAACTCTACTATATCTGGAATGAATTACTATCCAGAA
ATGGGGGGCATATCATAGTGGCCTTACTTATAAAGATCTTGTGAAAAGGAATTAAAGAAAAGCT
TAGGTCCAGGTGTGATGGTACATGCTTTAATTCCATCATTCAGGAGACAGGCAGACAGATCTCT
GAGTTCAAAGTCAGTATACAGTACAAGTTCCAGGACAGCCAAGGTTAGATAGTGAAGAAAATCA
TTGAATATAGAAAGCTGGTGAAGATGTACTAGAACAAGGGGGCTATGTTCTTGTCCCGGCAAGC
AGAACTTGCCAGCTCCTGCTTGACAGTCAAGAATAGAAGGGTTACTGGGACAATTGATGTTGGT
TAGCTAGAGCTAAGAAATTAGTGGTGATAAAGAAAAGACCAGCAGTATCGCTGAGGAGAAATCT
GAGAAATGTTTTCTGAGAGCACAAATAAGCTGTGTTCTAGAGAGAGACCTTGTGCTGGCAGCTG
GCAGAGATACTTGGTAATGTGTCAGGATCACCTAGATGGTACTGATTTCAAAAGTATGTAGGGG
TCATGGAGAATCCCTGAGGCTTGACACTGAGAGAGCCCAGGAAAGGCCATTGGTGAAGCTGCAG
CCTCAGTGGCATTTGAAGACCCAGGACTGAAGGGGGTCAGGCAAAGAAGTTGAGGCTTGGCACC
ATGAAGAGAGTTTGTGAGAGGCTATTGGTGAAGTCTAGTTGCAGCAGAAGACTACAGTGTATTG
GAGATGCCAGTACCGTGGGATGTCTGCCAGGAACAGCAACAGCAATGGAGTGGAGTCAGCCAGA
GCCTGGAGTGCTACAGAGGTCAGAGCTGAAGAAGTAACCTTTGGAGGAACCCAGAAGATCATAT
GTGGATCCTAGATATTGAATCAAAAAGCTGTGAAGTTGAAGTTGCCTTGGCAACCTTAAGATGT
TAGAGATACCAGAGATGAGGGATACCTGATGAGGAAATTTGCCAACAGGGAATGGAATCAACCC
AAGAGAAAGAATTGTGTTACAGTCAACAAAGCTGAAAAGATTTGTTGTATATCAGACATGGAGA
TGTATATTCTATACCATGATATCATTGGAAGTATGTGATCTGCCTTTGATTTTATAGGGTATTA
CAGTTAAGAGATGACTGATAGACTATAGGGACTTTTGAAGTTGGGCTAAATGTATTTCATATTA
TGTTATGGCTAGAAGCCTATGGGGGCCAGGGAGTGGAATGTGGAATGTGGTAGTTAGAATAGGT
TCCTAGCATGGATTCATGTGTTTGAATGGCCAATAAGGACTGGTACAACTGGGAAGTATGGCCT
TGTTGGAGTATGTGTGGCCTCATTGAATGAAGTGGATCGTTGTGGAGAGGTGGGCTTTGCGGTC
TCACATATAAGCTCAAGTTAGACCCAGTGTGTAGTCCGTTTTCTCCTGGCTGCCTGTGGAAGAC
AGTCCCTTTTTGCTGCCTTCAGATCAAGATATAGAACTCTCAACTCCTCCAGCTGATGGACTGA
ACCTCTGAAACTATAAGCCAGCCCCAACTAAGTGTTTTCCTTTTGAAGTCTCTTGCCTTGATCA
TGTAGTCCTGTCAGAGAAAACTCTTAAGACAGTGGTATTCCTCTGCAAACCTTAACTGAGCCCA
GAACTATTGAAATGATCTTGATGTGATCATTGTTAATACATTGCACTGTCTGGATTTCCTTATA
TTTTAATGATTGGTAGTTTCAGAAATTTGGGAATCAGTAATGTAAGAAATACATAGTGAAGAAA
TATAATCATAATGGATTCAGATTTGAGTTTATCTTATTGATAAGGAAGTAAGGTATATGTGATG
AATGTCCACAGATAGATGTATGTGTCTCCCTCCTGCCCCCAGGACTGGTGACTGAACCCAGGGC
CTTAAGCATTTCAGGCAAGCACTCTGAATCCAGCTGGAGACAGTTTGTAGCTATCATTTAGTAC
CTGATGTTTGCGAGTGTAAGATGTAAATGAAGGGGAATGGTGCTGCCTCACGGGATTGTGATCT
TAGCTTACGTGTTTATGCTTGAATGTTATGGCAGGAACCTGCCAGTGACTGATGGAGTATGTGG
TGGTGGTCGTCCGAGCAGTCTTAAAGGCAGCTTAGCACCGTGTGCAGGCTCTTGTTGCTTAAGG
TCTCTCTATGATGGCTTGGGAAGGGTGGTGCTTCTTTAAGGGACAAACATGGTTATGTAGCTAT
TTCATTTGTCTATGTGTGCTCCATTTCTGTATATAAAACCCTCATCAGTGAGTGCCCCTCCCCT
TCTTGCTGTTTAAAAGACTTAAACATAATAAAGTCATGCTCCCTTCATTGCTTTTGAATACCAG
TTTTGATATTGGATGCCTGAATATTCTACTGGTACTGTGTCATTCTAGTTTTACTGTTTTTCCA
CTTATACATTGTCACTGCTCTTTTTTAGACTCCTACCCTGGGTTAAATAGCGTGGACTAAGCAG
TGTTTTGAGCATGTGGAACTCGTAGGAACTTACTCATTATCTTGGCATCGCTCTCGGGTTCTCC
CGTGACTCTGCATTGCCTTTATCCTTTTCCTTAGATTCATTACCCTTAAGCAAGGGCAGATACC
CTGTTGTGGAAAGTAGGAGTGAGTTGAGTGAATACTTTTTGCCATCTCCTTGGTTGTAATCTTT
TCCACTTGAAATTTTATGTTCCTATAAACTTATTTTCCTGGCATTGGTCCTTTGGACTATAGCT
TAGTATTCTTAACACAATATTTTAAAATTTAGTTCTGTGAACTATAAATAATATAGATATGTAA
TTAATTACATGGGAATAAACATTCAGACCCTTTATTTTACTTGAAGTTGAGCATAAGCTTTTTT
TTGTTTTTGTTTTTTTTGTTTTGCAAGTTATGGAAACTGATCATGAAGTCAACTTCTCAGGGAA
TTCAGGGAGAACAAATATATCTTCAGCCAGTTTAGTGGTCTACAATTGCTGAATGGTGTATATA
TGGGATTGGGCAAATGTTGCATGTACTTTGTCTTTTTCACACTGTTATAAATTATATTAATATG
ATACTGTACCCTAAGACTAGGTCTATGCTAGACCAACAATTCATTCCTGGGCCCCTGAAGATAC
TTCTTTGGCCCTGCTGTCTATTTAGCCAAGCACCCACAACACAAGACCAGACCCCAAGTTCTGC
TGTTTCAGTTGCCACGCCTACAGTTAGTGTTTCAGCTCCTGCTCCTACAGCCACACCTGTGCAA
ACTGTACCCCAGCCGCACCCACAGACGTTACCTCCTGCTGTTCCTCACTCAGTCCCTCAGCCGG
CAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCTCCGTTCCGTGTGCCCCTTCCTGGCAT
GCCAATTCCACTTCCAGGTGTAGCAATGATGCAAATAGTCAGCTGCCCGTATGTAAAGACAGTC
GCTACCACCAAGACCGGTGTATTACCAGGAATGGCCCCTCCTATAGTACCCATGATACATCCCC
AGGTTGCTATTGCAGCTTCACCTGCTACCTTAGCTGGAGCCACCGCAGTTTCTGAGTGGACTGA
ATATAAAACAGCAGATGGGAAGACGTACTATTATAATAATAGAACACTTGAATCAACGTGGGAA
AAGCCCCAAGAACTGAAGGAAAAAGAAAAATTAGATGAGAAGATTAAAGAACCAATTAAGGAGG
CATCTGAAGAGCCATTGCCAATGGAGACAGAGGAGGAAGATCCTAAGGAAGAACCTATAAAGGA
GATAAAGGAGGAACCCAAAGAAGAAGAGATGACTGAAGAAGAAAAGGCTGCCCAGAAGGCAAAG
CCAGTAGCTACTACTCCTATTCCTGGTACTCCATGGTGTGTTGTTTGGACTGGCGATGAGAGGG
TCTTCTTTTACAATCCCACCACTCGTCTTTCTATGTGGGACCGACCTGATGATTTAATTGGAAG
GGCAGATGTTGACAAAATTATTCAAGAGCCCCCTCATAAAAAAGGATTAGAAGACATGAAGAAA
CTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAGTTCTCGATGAGTGCAATTA
AAGAAGAACAAGAATTAATGGAAGAAATGAATGAAGATGAGCCTATTAAAGCAAAAAAGCGGAA
GAGAATGTCAAAGAAGCCCTTTATGTGGATTGCCCGAGCTTCTCTATTTAGGAGAGATGATAAT
AAAGACATTGATTCAGAGAAAGAAGCTGCCATGGAAGCTGAAATTAAAGCTGCCCGAGAAAGGG
CCATTGTCCCTCTGGAGGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAGAGAGAGGGGTGTC
AGCTTTTTCAACATGGGAGAAGGAGTTGCACAAGATAGTGTTTGACCCTCGGTACTTGCTTCTC
AATCCTAAAGAAAGGAAACAGGTGTTTGATCAATATGTCAAGACCAGAGCAGAGGAAGAACGCA
GGGAAAAGAAAAACAAAATAATGCAAGCCAAGGAAGATTTCAAAAAAATGATGGAAGAAGCAAA
GTTTAATCCAAGAGCTACTTTTAGTGAATTTGCTGCCAAACATGCTAAAGATTCAAGATTCAAA
GCAATTGAAAAGATGAAAGATAGAGAAGCATTGTTTAATGAATTCGTGGCAGCTGCAAGGAAGA
AAGAAAAAGAAGATTCGAAGACGAGAGGTGAGAAGATTAAATCAGATTTCTTCGAACTGTTATC
TAATCATCACTTGGACAGTCAATCTCGGTGGAGCAAAGTAAAAGACAAAGTAGAAAGCGACCCA
CGATACAAAGCAGTGGATAGTTCGTCAATGAGAGAAGACCTTTTCAAACAGTACATAGAGAAAA
TAGCTAAGAATTTAGACTCAGAAAAAGAAAAAGAGCTGGAGAGACAAGCCCGCATTGAGGCAAG
CCTTCGAGAACGTGAAAGAGAAGTTCAAAAGGCACGTTCTGAGCAAACTAAAGAAATTGATCGA
GAGAGAGAGCAGCACAAACGAGAAGAAGCTATCCAGAATTTCAAGGCTCTTCTGTCTGACATGG
TACGTTCTTCAGATGTGTCCTGGTCTGATACTAGGAGGACCCTCCGGAAGGACCACCGTTGGGA
GTCTGGTTCCTTATTGGAAAGAGAGGAGAAAGAGAAACTCTTTAATGAACATATTGAAGCGCTT
ACCAAAAAGAAAAGGGAGCACTTTAGGCAGCTTCTGGATGAGACTTCCGCGATTACCTTAACAT
CCACGTGGAAAGAAGTGAAGAAAATAATTAAGGAAGATCCTCGCTGCATTAAGTTCTCCTCCAG
TGACAGGAAAAAACAAAGGGAGTTTGAAGAATACATCAGAGACAAATACATCACTGCCAAAGCT
GACTTCAGGACACTTTTGAAAGAGACCAAATTCATTACGTACAGATCCAAAAAGCTAATCCAAG
AATCTGATCAGCACCTGAAAGATGTAGAAAAAATTTTGCAGAATGACAAACGGTATCTAGTACT
GGACTGTGTACCAGAGGAGAGGAGGAAACTCATCGTGGCATATGTTGATGACCTGGATCGCCGA
GGTCCACCTCCACCTCCCACAGCATCAGAGCCCACTAGACGATCAACAAAATAATTCTAAATGC
CCTTCCCTGGGGGTTGCTGTTAATTGAAAATGCTTGCATGAGCCAAATTTTCAGGTTTTTACAT
ATATGTGCATTAGTCAACCTATTGCAAAACCACCTGATGACAGAAGGAGAAGCAATTGCGGGCA
GTCTCTGAACAGAACACTTTGAAAATATTTAATGCTTTTCTTTGTGTGGCATGACTGACATACA
TACTCAAATATAGACTGTCTCTAGTAAATTTAAAATCTTGAAGCTAAAAAAATCATCCTTTTCT
AAGGTGTGGAAGCCAGTGACTTGGTGATATTTTTACTAGCAGTGTTACTCAGCAAGACAGGAGA
ATTTGTGGTAGGAGCTTGGAAATAGCACAGACTCCAGGAAAACTGAAGTTGGAGTCTGTTTTTG
ATTTTGTTTTTTAAGCGGGTAAAAGAGGAAACACTGAATTGGATTCTTCCAGAGACTATGAATA
TTATAACGGACACACTTTTACCTTTGTCTCTGAAGCACAGTTTAGTTGTGTTTGTTCATGTAAG
CTTTGATTCTCCCCCTCTTGGTTATAGGCCAAGTCTTGTTTAGCCCAGGAGAAGATGTATTTAG
TAATTTCTTCTCAGGTATGAACCACATTCATAAATAACATGTTGGCCAGAATGGAATCCTGGTT
TAAACATTCTTTATTCTCCACTGAATGATCTCTACCAATATTCTCAATTAGACAACAAAACTCC
CTTTCTGGGCGTTCCCTGGAAACTACTTCTGTTTGAATGTTTGAACTTTTGTTTCTAAAAAGTT
TAATTTTAAGATGTTTGAATGTTGAATTTATGTATTTGAACTACAATAAACCAACCCTTTTATA
TA

hide sequence

RefSeq Acc Id:

XM_039096854 ⟹ XP_038952782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,756,558 - 34,817,205 (+)	NCBI
mRatBN7.2	18	34,505,708 - 34,566,285 (+)	NCBI

RefSeq Acc Id:

XM_039096855 ⟹ XP_038952783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,779,174 - 34,817,205 (+)	NCBI
mRatBN7.2	18	34,528,200 - 34,566,285 (+)	NCBI

RefSeq Acc Id:

XM_063277363 ⟹ XP_063133433

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,756,558 - 34,796,245 (+)	NCBI

RefSeq Acc Id:

XR_005496033

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,756,558 - 34,802,734 (+)	NCBI
mRatBN7.2	18	34,505,708 - 34,551,759 (+)	NCBI

RefSeq Acc Id:

XR_361332

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	34,756,558 - 34,816,296 (+)	NCBI
mRatBN7.2	18	34,505,708 - 34,565,391 (+)	NCBI
Rnor_6.0	18	36,829,054 - 36,888,887 (+)	NCBI
Rnor_5.0	18	36,491,800 - 36,552,727 (+)	NCBI

Sequence:

show sequence

CCAATTGGGAACGCCGGGTCGGCGGGTGGATGAACGCGGCTGTCTGTAATGGCGGAGCGTGGCG
GGGACGGAGGGGAAGGCGAGCGCTTCAACCCGGGGGAGCTGAGGATGGCTCAACAGCAGGCCTT
GAGATTCCGAGGCCCAGCTCCCCCACCAAATGCAGTGATGCGCGGCCCACCACCTCTTATGAGA
CCACCTCCTCCTTTCGGCATGATGAGAGGCCCTCCTCCACCACCCAGGCCCCCCTTTGGACGGC
CTCCTTTTGATCCTAATATGCCACCAATGCCTCCCCCAGGAGGAATACCTCCACCCATGGGCCC
ACCACACCTCCAGAGACCACCATTCATGCCTCCACCCATGGGAGCTATGCCTCCTCCTCCGGGC
ATGATGTTCCCACCAGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCAGCACTGCCCCCCACTG
AGGAGATATGGGTAGAAAATAAGACTCCAGATGGGAAGGTTTATTACTATAATGCTCGGACTCG
TGAATCTGCATGGACCAAGCCAGATGGAGTTAAGGTTATTCAGCAGTCAGAACTAACACCTATG
CTTGCAGCTCAAGCACAGGTCCAGGCTCAGGCCCAGGCCCAGGCTCAGGCTCAGGCACAGGCAC
AGGCTCAGGCCCAGGCCCAGGCCCAGGCCCAGGCTCAGGCAGCCCAGGCTCAGGCCCAAGCGCA
AGCACAAGCTCAGGCCCAGGCTCAGGCCCAGGCCCAGGCTCAGGTCCAAGCACAAGCAGTAGGC
GCTCCCACCCCTACCACCAGTAGCCCAGCACCTGCAGTGTCCACGTCAGCACCAACATCTACCC
CGTCCTCCACCACAGCTACCACAACAACTGCTACTTCAGTTGCACAGACAGTATCAACACCCAC
AACACAAGACCAGACCCCAAGTTCTGCTGTTTCAGTTGCCACGCCTACAGTTAGTGTTTCAGCT
CCTGCTCCTACAGCCACACCTGTGCAAACTGTACCCCAGCCGCACCCACAGACGTTACCTCCTG
CTGTTCCTCACTCAGTCCCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCC
TCCGTTCCGTGTGCCCCTTCCTGGCATGCCAATTCCACTTCCAGGTGTAGCAATGATGCAAATA
GTCAGCTGCCCGTATGTAAAGACAGTCGCTACCACCAAGACCGGTGTATTACCAGGAATGGCCC
CTCCTATAGTACCCATGATACATCCCCAGGTTGCTATTGCAGCTTCACCTGCTACCTTAGCTGG
AGCCACCGCAGTTTCTGAGTGGACTGAATATAAAACAGCAGATGGGAAGACGTACTATTATAAT
AATAGAACACTTGAATCAACGTGGGAAAAGCCCCAAGAACTGAAGGAAAAAGAAAAATTAGATG
AGAAGATTAAAGAACCAATTAAGGAGGCATCTGAAGAGCCATTGCCAATGGAGACAGAGGAGGA
AGATCCTAAGGAAGAACCTATAAAGGAGATAAAGGAGGAACCCAAAGAAGAAGAGATGACTGAA
GAAGAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACTACTCCTATTCCTGGTACTCCATGGT
GTGTTGTTTGGACTGGCGATGAGAGGGTCTTCTTTTACAATCCCACCACTCGTCTTTCTATGTG
GGACCGACCTGATGATTTAATTGGAAGGGCAGATGTTGACAAAATTATTCAAGAGCCCCCTCAT
AAAAAAGGATTAGAAGACATGAAGAAACTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAA
AGTGGCAGTTCTCGATGAGTGCAATTAAAGAAGAACAAGAATTAATGGAAGAAATGAATGAAGA
TGAGCCTATTAAAGCAAAAAAGCGGAAGAGAATGTCAAAGAAGCCCTTTATGTGGATTGCCCGA
GCTTCTCTATTTAGGAGAGATGATAATAAAGACATTGATTCAGAGAAAGAAGCTGCCATGGAAG
CTGAAATTAAAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGGCTCGAATGAAGCAGTTCAA
GGACATGCTGCTAGAGAGAGGGGTGTCAGCTTTTTCAACATGGGAGAAGGAGTTGCACAAGATA
GTGTTTGACCCTCGGTACTTGCTTCTCAATCCTAAAGAAAGGAAACAGGTGTTTGATCAATATG
TCAAGACCAGAGCAGAGGAAGAACGCAGGGAAAAGAAAAACAAAATAATGCAAGCCAAGGAAGA
TTTCAAAAAAATGATGGAAGAAGCAAAGTTTAATCCAAGAGCTACTTTTAGTGAATTTGCTGCC
AAACATGCTAAAGATTCAAGATTCAAAGCAATTGAAAAGATGAAAGATAGAGAAGCATTGTTTA
ATGAATTCGTGGCAGCTGCAAGGAAGAAAGAAAAAGAAGATTCGAAGACGAGAGGTGAGAAGAT
TAAATCAGATTTCTTCGAACTGTTATCTAATCATCACTTGGACAGTCAATCTCGGTGGAGCAAA
GTAAAAGACAAAGTAGAAAGCGACCCACGATACAAAGCAGTGGATAGTTCGTCAATGAGAGAAG
ACCTTTTCAAACAGTACATAGAGAAAATAGCTAAGAATTTAGACTCAGAAAAAGAAAAAGAGCT
GGAGAGACAAGCCCGCATTGAGGCAAGCCTTCGAGAACGTGAAAGAGAAGTTCAAAAGGCACGT
TCTGAGCAAACTAAAGAAATTGATCGAGAGAGAGAGCAGCACAAACGAGAAGAAGCTATCCAGA
ATTTCAAGGCTCTTCTGTCTGACATGGTACGTTCTTCAGATGTGTCCTGGTCTGATACTAGGAG
GACCCTCCGGAAGGACCACCGTTGGGAGTCTGGTTCCTTATTGGAAAGAGAGGAGAAAGAGAAA
CTCTTTAATGAACATATTGAAGCGCTTACCAAAAAGAAAAGGGAGCACTTTAGGCAGCTTCTGG
ATGAGACTTCCGCGATTACCTTAACATCCACGTGGAAAGAAGTGAAGAAAATAATTAAGGAAGA
TCCTCGCTGCATTAAGTTCTCCTCCAGTGACAGGAAAAAACAAAGGGAGTTTGAAGAATACATC
AGAGACAAATACATCACTGCCAAAGCTGACTTCAGGACACTTTTGAAAGAGACCAAATTCATTA
CGTACAGTTAATTTAGTGAAAGATGTGAAAGTGAAAGCTTGTGAAAGATGCTGGGATTGGCAGC
CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGCTAATCCAAGAATCTGA
TCAGCACCTGAAAGATGTAGAAAAAATTTTGCAGAATGACAAACGGTATCTAGTACTGGACTGT
GTACCAGAGGAGAGGAGGAAACTCATCGTGGCATATGTTGATGACCTGGATCGCCGAGGTCCAC
CTCCACCTCCCACAGCATCAGAGCCCACTAGACGATCAACAAAATAAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100860	(Get FASTA)	NCBI Sequence Viewer
	XP_006254735	(Get FASTA)	NCBI Sequence Viewer
	XP_006254736	(Get FASTA)	NCBI Sequence Viewer
	XP_006254737	(Get FASTA)	NCBI Sequence Viewer
	XP_017456449	(Get FASTA)	NCBI Sequence Viewer
	XP_038952782	(Get FASTA)	NCBI Sequence Viewer
	XP_038952783	(Get FASTA)	NCBI Sequence Viewer
	XP_063133433	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68862	(Get FASTA)	NCBI Sequence Viewer
	EDL76486	(Get FASTA)	NCBI Sequence Viewer
	EDL76487	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025467
	ENSRNOP00000025467.5
	ENSRNOP00000073243
	ENSRNOP00000073243.2
	ENSRNOP00000094140.1
	ENSRNOP00000094971
	ENSRNOP00000094971.1
	ENSRNOP00000108739.1
	ENSRNOP00000109103.1

RefSeq Acc Id:

NP_001100860 ⟸ NM_001107390

- UniProtKB:

D3ZTL0 (UniProtKB/TrEMBL), A0A8I6GKL3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAERGGDGGEGERFNPGELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPR
PPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMPPPMGAMPPPPGMMFPPGMPPGTAPGAP
ALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQ
AQAQAQAQAQAQAQAQAQAAQAQAQAQAQAQAQAQAQAQAQVQAQAVGAPTPTTSSPAPAVSTS
APTSTPSSTTATTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSAPAPTATPVQTVPQPHP
QTLPPAVPHSVPQPAAAIPAFPPVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGV
LPGMAPPIVPMIHPQVAIAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKE
KEKLDEKIKEPIKEASEEPLPMETEEEDPKEEPIKEIKEEPKEEEMTEEEKAAQKAKPVATTPI
PGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPHKKGLEDMKKLRHPAPT
MLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDIDSEKEAAMEAEIKAARERAIV
PLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREK
KNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEK
EDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAK
NLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRS
SDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTW
KEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESD
QHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDRRGPPPPPTASEPTRRSTK

hide sequence

RefSeq Acc Id:	XP_006254735 ⟸ XM_006254673
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GKL3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAERGGDGGEGERFNPGELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPR PPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMPPPMGAMPPPPGMMFPPGMPPGTAPGAP ALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQ AQAQAQAQAQAQAQAQAQAAQAQAQAQAQAQAQAQAQAQAQVQAQAVGAPTPTTSSPAPAVSTS APTSTPSSTTATTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSAPAPTATPVQTVPQPHP QTLPPAVPHSVPQPAAAIPAFPPVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGV LPGMAPPIVPMIHPQVAIAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKE KEKLDEKIKEPIKEASEEPLPMETEEEDPKEEPIKEIKEEPKEEEMTEEEKAAQKAKPVATTPI PGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPHKKGLEDMKKLRHPAPT MLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRMSKKPFMWIARASLFRRDDNKDIDSEK EAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQ VFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKD REALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDS SSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKR EEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREH FRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLK ETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDRRGPPPPPT ASEPTRRSTK hide sequence

RefSeq Acc Id:	XP_006254736 ⟸ XM_006254674
- Peptide Label:	isoform X2
- UniProtKB:	B5DEZ4 (UniProtKB/TrEMBL), A0A8I6GKL3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAERGGDGGEGERFNPGELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPR PPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMPPPMGAMPPPPGMMFPPGMPPGTAPGAP ALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQ AQAQAQAQAQAQAQAQAQAAQAQAQAQAQAQAQAQAQAQAQVQAQAVGAPTPTTSSPAPAVSTS APTSTPSSTTATTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSAPAPTATPVQTVPQPHP QTLPPAVPHSVPQPAAAIPAFPPVMVPPFRVPLPGMPIPLPGVLPGMAPPIVPMIHPQVAIAAS PATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKEASEEPLP METEEEDPKEEPIKEIKEEPKEEEMTEEEKAAQKAKPVATTPIPGTPWCVVWTGDERVFFYNPT TRLSMWDRPDDLIGRADVDKIIQEPPHKKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELM EEMNEDEPIKAKKRKRMSKKPFMWIARASLFRRDDNKDIDSEKEAAMEAEIKAARERAIVPLEA RMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKI MQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSK TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDS EKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVS WSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVK KIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLK DVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDRRGPPPPPTASEPTRRSTK hide sequence

RefSeq Acc Id:	XP_006254737 ⟸ XM_006254675
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AM46 (UniProtKB/TrEMBL), A0A8I6GKL3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAERGGDGGEGERFNPGELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPR PPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMPPPMGAMPPPPGMMFPPGMPPGTAPGAP ALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQ AQAQAQAQAQAQAQAQAQAAQAQAQAQAQAQAQAQAQAQAQVQAQAVGAPTPTTSSPAPAVSTS APTSTPSSTTATTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSAPAPTATPVQTVPQPHP QTLPPAVPHSVPQPAAAIPAFPPVMVPPFRVPLPGMPIPLPGVLPGMAPPIVPMIHPQVAIAAS PATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKEASEEPLP METEEEDPKEEPIKEIKEEPKEEEMTEEEKAAQKAKPVATTPIPGTPWCVVWTGDERVFFYNPT TRLSMWDRPDDLIGRADVDKIIQEPPHKKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELM EEMNEDEPIKAKKRKRDDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAF STWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFN PRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH HLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLR EREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESG SLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR KKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDC VPEERRKLIVAYVDDLDRRGPPPPPTASEPTRRSTK hide sequence

RefSeq Acc Id:

XP_017456449 ⟸ XM_017600960

- Peptide Label:

isoform X5

- Sequence:

show sequence

MLHVLCLFHTVINYINMILYPKTRSMLDQQFIPGPLKILLWPCCLFSQAPTTQDQTPSSAVSVA
TPTVSVSAPAPTATPVQTVPQPHPQTLPPAVPHSVPQPAAAIPAFPPVMVPPFRVPLPGMPIPL
PGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVAIAASPATLAGATAVSEWTEYKTA
DGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKEASEEPLPMETEEEDPKEEPIKEIKEE
PKEEEMTEEEKAAQKAKPVATTPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVD
KIIQEPPHKKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRMSK
KPFMWIARASLFRRDDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFST
WEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPR
ATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHL
DSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLRER
EREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL
LEREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKK
QREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDCVP
EERRKLIVAYVDDLDRRGPPPPPTASEPTRRSTK

hide sequence

Ensembl Acc Id:

ENSRNOP00000025467 ⟸ ENSRNOT00000025467

Ensembl Acc Id:

ENSRNOP00000073243 ⟸ ENSRNOT00000086979

RefSeq Acc Id:	XP_038952782 ⟸ XM_039096854
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6GKL3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952783 ⟸ XM_039096855
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000094140 ⟸ ENSRNOT00000106966

Ensembl Acc Id:

ENSRNOP00000094971 ⟸ ENSRNOT00000116807

RefSeq Acc Id:	XP_063133433 ⟸ XM_063277363
- Peptide Label:	isoform X6
- UniProtKB:	A6J3K5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000109103 ⟸ ENSRNOT00000158534

Ensembl Acc Id:

ENSRNOP00000108739 ⟸ ENSRNOT00000127721

Protein Domains

FF WW

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZTL0-F1-model_v2	AlphaFold	D3ZTL0	1-1081	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700751

Promoter ID:

EPDNEW_R11275

Type:

multiple initiation site

Name:

Tcerg1_1

Description:

transcription elongation regulator 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	36,829,085 - 36,829,145	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311748	AgrOrtholog
BioCyc Gene	G2FUF-7697	BioCyc
Ensembl Genes	ENSRNOG00000018849	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025467	ENTREZGENE
	ENSRNOT00000025467.8	UniProtKB/TrEMBL
	ENSRNOT00000086979	ENTREZGENE
	ENSRNOT00000086979.3	UniProtKB/TrEMBL
	ENSRNOT00000106966.2	UniProtKB/TrEMBL
	ENSRNOT00000116807	ENTREZGENE
	ENSRNOT00000116807.2	UniProtKB/TrEMBL
	ENSRNOT00000127721.1	UniProtKB/TrEMBL
	ENSRNOT00000158534.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.440	UniProtKB/TrEMBL
	2.20.70.10	UniProtKB/TrEMBL
InterPro	FF_domain	UniProtKB/TrEMBL
	FF_domain_sf	UniProtKB/TrEMBL
	TCRG1-like	UniProtKB/TrEMBL
	WW_dom_sf	UniProtKB/TrEMBL
	WW_Rsp5_WWP	UniProtKB/TrEMBL
	WW_TCRG1_3rd	UniProtKB/TrEMBL
KEGG Report	rno:307474	UniProtKB/TrEMBL
NCBI Gene	307474	ENTREZGENE
PANTHER	PTHR15377	UniProtKB/TrEMBL
	TRANSCRIPTION ELONGATION REGULATOR 1	UniProtKB/TrEMBL
Pfam	PF00397	UniProtKB/TrEMBL
	PF01846	UniProtKB/TrEMBL
	WW_TCERG1	UniProtKB/TrEMBL
PhenoGen	Tcerg1	PhenoGen
PROSITE	PS51676	UniProtKB/TrEMBL
	WW_DOMAIN_1	UniProtKB/TrEMBL
	WW_DOMAIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018849	RatGTEx
SMART	SM00441	UniProtKB/TrEMBL
	SM00456	UniProtKB/TrEMBL
Superfamily-SCOP	81698	UniProtKB/TrEMBL
	WW_Rsp5_WWP	UniProtKB/TrEMBL
UniProt	A0A0G2K504_RAT	UniProtKB/TrEMBL
	A0A8I6AM46	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GKL3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LU61_RAT	UniProtKB/TrEMBL
	A0ABK0LZC8_RAT	UniProtKB/TrEMBL
	A6J3K5	ENTREZGENE, UniProtKB/TrEMBL
	B5DEZ4	ENTREZGENE, UniProtKB/TrEMBL
	D3ZTL0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-11-20	Tcerg1	transcription elongation regulator 1	Tcerg1	transcription elongation regulator 1 (CA150)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Tcerg1	transcription elongation regulator 1 (CA150)	Tcerg1_predicted	transcription elongation regulator 1 (CA150) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Tcerg1_predicted	transcription elongation regulator 1 (CA150) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)