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Gene: Ubap2 (ubiquitin-associated protein 2) Rattus norvegicus

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Symbol:

Ubap2

Name:

ubiquitin-associated protein 2

RGD ID:

1311717

Description:

Predicted to be involved in hematopoietic stem cell homeostasis. Predicted to be located in chromosome. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBAP2 (ubiquitin associated protein 2); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313169

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UBAP2 (ubiquitin associated protein 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Ubap2 (ubiquitin-associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ubap2 (ubiquitin associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UBAP2 (ubiquitin associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UBAP2 (ubiquitin associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ubap2 (ubiquitin associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UBAP2 (ubiquitin associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UBAP2 (ubiquitin associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ubap2 (ubiquitin associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ubap2 (ubiquitin associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ADAMTSL3 (ADAMTS like 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	UBAP2 (ubiquitin associated protein 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ubap2 (ubiquitin-associated protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ubap2a (ubiquitin associated protein 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ubap2b (ubiquitin associated protein 2b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	pqn-59	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	lig	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ubap2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

Ubap2-ps1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	61,144,182 - 61,233,355 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	61,144,182 - 61,232,828 (-)	Ensembl				GRCr8
mRatBN7.2	5	56,348,243 - 56,437,403 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	56,348,246 - 56,437,049 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	58,323,465 - 58,411,883 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	60,142,471 - 60,230,664 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	60,127,044 - 60,215,557 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	57,534,056 - 57,632,337 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	57,534,695 - 57,632,182 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	62,064,692 - 62,156,277 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	58,610,412 - 58,677,693 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	54,945,905 - 55,034,405 (-)	NCBI		Celera
RGSC_v3.1	5	58,610,589 - 58,677,879 (-)	NCBI
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

chlorpyrifos (ISO)

cobalt dichloride (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

FR900359 (ISO)

ivermectin (ISO)

ketamine (EXP)

lead(0) (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

miconazole (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (ISO)

nitrates (ISO)

Nutlin-3 (ISO)

okadaic acid (ISO)

paracetamol (ISO)

permethrin (EXP)

pirinixic acid (ISO)

pyrogallol (ISO)

quercetin (ISO)

rotenone (EXP)

SB 431542 (ISO)

selenium atom (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hematopoietic stem cell homeostasis (IEA)

Cellular Component

chromosome (IEA)

cytoplasm (IBA,IEA)

nucleus (IBA,IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22658674	PMID:25468996

Genomics

Comparative Map Data

Ubap2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	61,144,182 - 61,233,355 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	61,144,182 - 61,232,828 (-)	Ensembl				GRCr8
mRatBN7.2	5	56,348,243 - 56,437,403 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	56,348,246 - 56,437,049 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	58,323,465 - 58,411,883 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	60,142,471 - 60,230,664 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	60,127,044 - 60,215,557 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	57,534,056 - 57,632,337 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	57,534,695 - 57,632,182 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	62,064,692 - 62,156,277 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	58,610,412 - 58,677,693 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	54,945,905 - 55,034,405 (-)	NCBI		Celera
RGSC_v3.1	5	58,610,589 - 58,677,879 (-)	NCBI
Cytogenetic Map	5	q22	NCBI

UBAP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	33,921,693 - 34,049,199 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	33,921,691 - 34,049,420 (-)	Ensembl			hg38	GRCh38
GRCh37	9	33,921,691 - 34,049,197 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	33,911,691 - 34,038,947 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	33,853,492 - 33,980,727 (-)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	33,879,453 - 34,005,922 (-)	NCBI		HuRef
CHM1_1	9	33,921,454 - 34,048,792 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	33,940,293 - 34,067,767 (-)	NCBI		T2T-CHM13v2.0

Ubap2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	41,194,313 - 41,276,016 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	41,194,313 - 41,275,144 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	41,194,313 - 41,276,016 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	41,194,313 - 41,275,144 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	41,141,348 - 41,222,168 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	41,382,986 - 41,463,806 (-)	NCBI		MGSCv36	mm8
Celera	4	40,855,618 - 40,936,380 (-)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	21.13	NCBI

Ubap2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955472	2,020,232 - 2,100,155 (+)	Ensembl
ChiLan1.0	NW_004955472	2,044,397 - 2,100,904 (+)	NCBI	ChiLan1.0	ChiLan1.0

UBAP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	90,553,375 - 90,680,854 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	90,558,726 - 90,686,796 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	33,759,877 - 33,887,146 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	34,570,883 - 34,697,752 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	34,570,883 - 34,697,752 (-)	Ensembl			panPan2	panpan1.1

UBAP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	50,679,601 - 50,803,455 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	50,675,525 - 50,802,940 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	49,309,029 - 49,433,088 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	51,619,935 - 51,744,896 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	51,619,939 - 51,744,367 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	50,283,528 - 50,407,971 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	50,151,044 - 50,275,919 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	50,916,196 - 51,041,038 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ubap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	165,559,683 - 165,662,665 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	2,107,230 - 2,210,225 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	2,107,263 - 2,210,200 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBAP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	32,756,040 - 32,892,867 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	32,755,707 - 32,897,260 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	37,093,935 - 37,146,304 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBAP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	46,536,570 - 46,665,694 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	46,536,560 - 46,665,902 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	43,519,609 - 43,553,728 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ubap2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	38,336,136 - 38,439,565 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624736	38,335,334 - 38,465,521 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ubap2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	4,280,461 - 4,368,724 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ubap2
675 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	260
Count of miRNA genes:	178
Interacting mature miRNAs:	190
Transcripts:	ENSRNOT00000015920
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2303577	Gluco47	Glucose level QTL 47	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	16520019	61520019	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat

Markers in Region

RH142768

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	56,358,856 - 56,358,984 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	57,544,658 - 57,544,785	NCBI	Rnor6.0
Rnor_5.0	5	62,075,301 - 62,075,428	UniSTS	Rnor5.0
RGSC_v3.4	5	58,621,193 - 58,621,320	UniSTS	RGSC3.4
Celera	5	54,956,514 - 54,956,641	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000080295 ⟹ ENSRNOP00000070607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	61,144,182 - 61,232,759 (-)	Ensembl
mRatBN7.2 Ensembl	5	56,348,246 - 56,436,822 (-)	Ensembl
Rnor_6.0 Ensembl	5	57,534,894 - 57,607,725 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080787 ⟹ ENSRNOP00000070670

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	61,144,182 - 61,228,637 (-)	Ensembl
mRatBN7.2 Ensembl	5	56,348,246 - 56,437,049 (-)	Ensembl
Rnor_6.0 Ensembl	5	57,534,695 - 57,632,177 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092581 ⟹ ENSRNOP00000075769

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	61,144,182 - 61,232,828 (-)	Ensembl
mRatBN7.2 Ensembl	5	56,348,246 - 56,436,822 (-)	Ensembl
Rnor_6.0 Ensembl	5	57,534,866 - 57,632,182 (-)	Ensembl

RefSeq Acc Id:

NM_001107928 ⟹ NP_001101398

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,182 - 61,232,759 (-)	NCBI
mRatBN7.2	5	56,348,243 - 56,436,822 (-)	NCBI
Rnor_6.0	5	57,534,059 - 57,632,182 (-)	NCBI
Rnor_5.0	5	62,064,692 - 62,156,277 (-)	NCBI
RGSC_v3.4	5	58,610,412 - 58,677,693 (-)	RGD
Celera	5	54,945,905 - 55,034,405 (-)	RGD

Sequence:

show sequence

GGCCGCCTCTGCCGCCGCCGCCGCTTTGTAAGAGGCACATTGGCAGGTAACGAGCGGCGGCGGC
GGCGGCGGGTCCCGAGTCCAACGAGAGCAGCAGCGATTTTGTATTTTGTACATACATTTTGTAT
ATTCTGTATATGATGACTTCTGTGAGCAATGATCGTTGCCGAGGTGCTCGGGAAAAACCACAGA
TGCCAACAACACACGCAGCACAGTCACAGAAACAAGTGGTACAGGCAACGGCTGAACAGATGCG
ACTTGCTCAAGTGATCTTTGATAAGAATGATTCAGATTTTGAAGCTAAAGTTAAACAGCTTATG
GAGGTGACGGGGAAAAATCAGGATGAGTGCATCGTGGCCCTGCATGACTGTAACGGTGATGTGA
ACAAAGCCATCAATACACTGCTGGAAGGGAGCTCTGACACCACTTCATGGGAGACTGTAGGAGG
AAAGAAGAAGAATTTTGGAAGAGAAAGCTCAGAAAACAAAGAAAACAGAGAGAAGAGGACAGAG
AGAGAAGCAAGTCGAGGACGGGGAAACAACAACCGGAAGGGACGAGGTGGCAGCCGAGGCCGAG
AGTTCAAAGGTGAAGAGAATGGAGTTGATTGCAGCCAAGGAGACAAACCTTCAGAGCGGGGCAA
GCGGACCCGAGGCAGAGGATTTGGGCGTGGCAGGGGCAGAGGGGCAGGAAGGCTGTCTGCTCAA
AGCATGGGGACATTCAATCCTGCAGACTATTCAGAGTCCATGTCAACAGATGGCTGTGGGACAA
AGTTGGTAGTTTGGGAAGCTGCTCAGAACGGCACAGATGAGGGACCTGAAGGGCTGGCAAAGCC
TCACAGTATATCTCAGGAGCTGCCAAGTAAAAGTTCTTATGGACTTAAAGGTGCCTGGAAGAAT
TCTGTGGAGGAGTGGACAGCAGAAGACTGGACTGAAGATCTTTCTGAGACAAAAGTATTCACGG
CTTCATCCGCTCCAGCAGACAACCATGTCCCGCCTGGGCAGAGCATTGATCTGGTGGCCTTGCT
CCACAAACCTGCTCCTCCCACTCAAGCCGCAGAAGTCAACTCCTTTGAAACGTCCCAGCAGCAG
GGCTTCGGCCAGGCCCTTGTCTTCACAAATTCTCAGCACAACAATCCAACGGCACCAGGGACTG
CAAGCTCCACTCCTGCTAGCTCATACTCTCCTCAGAGTTTGTCATCCGTCCTTGGCTCAGGATT
TGGAGAGCTGGCTCAGTCAAAAATGGTGAACATCTCCAACTCCCAGATTTTGGACAAGTTGAAA
CCACCAGGTTTAAGCCCGTTTCCTGCTGCTTCAAGCACACAGCAGAATGACAATGCGAGCCCCC
CAGCCACCACTGCTGCTTGGGACCTCAAGCCCTCGGCACCCCAGCCCTCAGTCCTCAGTCATTT
GGACTTCAAATCTCAGCCGGAACCATCTCCAGTTCTCAGCCAGTTGAGCCAGCGACAGCAACAG
CAGAACCAGGCAGTCAGTGTTCCTCCTCCAGGTTTGGAGTCCTTTCCTTCTCAGACAAAACACC
GAGAATCAGCACCGGGAGATGGTCCTTCTACTGTCAACAGACTTTTGCAGCTTCCTACCATGGC
TGTTGAAAACATTGTATCTGCCCACCAACCACAGCCCAAACACATTAAACTCCCTAAGCGCCGG
ATTCCTCCAGCTTCTAAGGTTCCTGTGTCCGCAGTGGAAATGCCCGGGTCTGCAGATATCACAG
GGCTGAATGTTCAGTTTGGGGCCCTCGAATTTGGATCAGAGCCATCTCTCTCTGAGTTTGGATC
AACAGCTTCAGCCAGTGAAAATAGCAGTCAGCTTCCTATCAGCTTGTACCCGAAGTCTTTAAGT
GAGCCCTTGAATGCCTCTTTCCCAATGACCAGTGCTGTACAGAACCCCACCTACACAACCTCAG
TCATTACCTCCTCCACTCTGACCAGCTCGTCCGTGAGCTCCACTAGCCCAGTAACAACTTGTTC
CTCTTACGACCAGAGTTCTGTGCATACCAGGATTGCGTACCAAAGCCCTGCAAGCCCAGCGGAC
GCGGCTCCCGGCTCCGTTGCTAACGGACATGGTGGTGGCCGAAGTCAGCACACAGTAGACACTA
CTTCATCCGTTCCAGCTCCAAAGAAGACAGACCCTTCTGCCCTTCCGTCTGTGAGCTCCCTCCC
CAGCCCCTCCTCCTGCACTGCACTTCTGCCCCCTTCGTCCCAGCACACTGCCACTTTGCCCGCC
TTGACTCCTGGTGAACTGTCCAGCAGCCCCCTTTCTCAGCTCAGCAGCTCCCTCTCTAGCCACC
AGAGCAGCTTGTCCTCTACCCATGCAACGCGGTCCACAAGCACGCCACACACTCATGCCAGTGT
GGAGAGCACCCCATCCTCAGCTGCCTTCTCAGCAGCCACTTCTGCTCCAAGTGCCCCGTCCTCA
GGGGTTGCCCTGCCTGGGAGCATGAGCACCGTGAGCAGCCTGTGCCTGGGTGGGACCACTGTGA
GCGCACCTAGCAGCAGTACCAGGGCCACAGCCTTGGCAAAGCACCCCCAAACCTTCCTCAAGGG
GTGCCTCCTCTGCTACACAATCAGTACCTCGTGGGCCCTGGAGGGCTGCTTCCTGCTTACCCGG
GGAATCTACGGTTATGATGAGCTCCAGATGCTGCAGTCACGGCTGCCGATGGATTACTATGGAA
TTCCCTTTGCAGCACCCACAGCCCTTGCCAGCCGAGATGGGAATCTAGCTAATAATCCATATTC
AGGTGATGTCACCAAGTTTGGCCGAGGAGACTCTGCATCCCCTGCACCTCCGACGACACCAGCT
CAGGCACAGCAGAGCCAGTCTCAGACCCACCACACGGCCCAGCAGCCCTTTTTGAATCCTGCTC
TGCCACCTGGCTACAGCTACACCGGCCTCCCCTACTACACTGGCGTGCCTGGTGCCTTCCAGTA
TGGGCCCACTATGTTTGTCCCTCCAACCTCAGCCAAGCAGCACGGTGTGACCCTCAGCACTCCC
CCGACCCCTTTTCAGCAGGCCAGTGGCTATGGGCAGCATGCTTACAGCGCAGGTTATGACGATT
TGACCCAGGGAACAGCGGCAGGAGACTACACCAAGGGTGGCTACGGTGGATCATCTCAGGCACC
AAACAAGTCGGCTGGTTCTGGGCCTAGCAAAGGGGTATCAGTATCTTCAGGCACTGGCTTACCC
GATATGACTGGTTCTGTCTACAACAAGACACAGACTTTTGACAAGCAGGGATTTCATACAGGGA
CTCCACCACCTTTCAGCCTGCCCTCTGCCTTGGGCTCCACTGGGCCCCTGGCTCCTGGCGCAGC
CCCCGGCTATGCGCCTGCGCCGTTCCTGCACATCATGCCGGCCCACCAGCAGCCCCACTCCCAG
CTGCTGCACCACCACCTACCACAGGACGCCCCGAGTGGCTCTGGTCAGCGCAGCCAGCCCAGCT
CCCTGCAGCCCAAGTCTCAAGCCTCCAAACCCACCTACGGCAACTCTCCATACTGGACAAACTA
GATCCTGAAAAGGAGAGGGTGGGCTCTTGGGCAGGGTATACTCTGGGCAGGAGAGAACACATGG
AGCACATTTCTGGGAGCCCGGTGCCCTTCCTAGAATTCTGAGACATAACTGTCAGCTGAGCCTC
TCTATGGGAAGCCTGCCTCCCAGACCCACTATTGTATGTAATGTATTTATGTATGTATTTGTAA
ATGTGATAGAAGCCTGGAAGAGCTGGGCTGTGGCTACGGGTAGCATACAAGTGTGCTCTCCCGG
TCTGGACACCGTTACTATAGCCAAGTAGGCCCCAACCCCACCTTTCTGCCTGCAGTCTTTCTAT
GTGACCCCAGCTCAGTGGGCTGCTGGGTGTGCCACTGAAGGACTCGTGGTTTGGGGCCAGGTCA
GTACCAATGAAGAATCACGACTTATCTCACTCCCTGTGAACCATTATGTTTTTCCCTCTGTAAT
TACTTCATACTTGTTTTTGAAAAACTGATCCTTTTGTCATTTGTCATGGTCCCCCTTCCAACAA
ATCTTAATCTGGAAATAGAAGTGACCCCTGTCCAGCATAAGCCTGGTGCCTATATGTCTGCGCA
CAGCAGGGGCTTCTGCTTTGGGTCTGGTCCTGCTCTAGAGACTTGTCTTTTCTGACCAACCATT
TAAAAAAAAATCTGAACTACGTCTCAGAGATGTTCAGCCAGTCAGCTCCTTTATAAAGAAATCA
AAGATCTGCTTCCTTCTCAGTGAAAGCCTGTCTCCAAACAAAGGCTCCTTTATACCAGTTGTCC
TGAGCCAGGTGGGCAACTGTTTCAGGGTTTTCTCTCGCCCAAACTCCACCTAATAAAGTTCTGA
GAGC

hide sequence

RefSeq Acc Id:

XM_006238054 ⟹ XP_006238116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,229,178 (-)	NCBI
mRatBN7.2	5	56,348,243 - 56,414,060 (-)	NCBI
Rnor_6.0	5	57,534,056 - 57,607,758 (-)	NCBI
Rnor_5.0	5	62,064,692 - 62,156,277 (-)	NCBI

Sequence:

show sequence

GTATGTTGTACATCAATTTTGGATATTCTGTATATGATGACTTCTGTGAGCAATGATCGTTGCC
GAGGTGCTCGGGAAAAACCACAGATGCCAACAACACACGCAGCACAGTCACAGAAACAAGTGGT
ACAGGCAACGGCTGAACAGATGCGACTTGCTCAAGTGATCTTTGATAAGAATGATTCAGATTTT
GAAGCTAAAGTTAAACAGCTTATGGAGGTGACGGGGAAAAATCAGGATGAGTGCATCGTGGCCC
TGCATGACTGTAACGGTGATGTGAACAAAGCCATCAATACACTGCTGGAAGGGAGCTCTGACAC
CACTTCATGGGAGACTGTAGGAGGAAAGAAGAAGAATTTTGGAAGAGAAAGCTCAGAAAACAAA
GAAAACAGAGAGAAGAGGACAGAGAGAGAAGCAAGTCGAGGACGGGGAAACAACAACCGGAAGG
GACGAGGTGGCAGCCGAGGCCGAGAGTTCAAAGGTGAAGAGAATGGAGTTGATTGCAGCCAAGG
AGACAAACCTTCAGAGCGGGGCAAGCGGACCCGAGGCAGAGGATTTGGGCGTGGCAGGGGCAGA
GGGGCAGGAAGGCTGTCTGCTCAAAGCATGGGGACATTCAATCCTGCAGACTATTCAGAGTCCA
TGTCAACAGATGGCTGTGGGACAAAGTTGGTAGTTTGGGAAGCTGCTCAGAACGGCACAGATGA
GGGACCTGAAGGGCTGGCAAAGCCTCACAGTATATCTCAGGAGCTGCCAAGTAAAAGTTCTTAT
GGACTTAAAGGTGCCTGGAAGAATTCTGTGGAGGAGTGGACAGCAGAAGACTGGACTGAAGATC
TTTCTGAGACAAAAGTATTCACGGCTTCATCCGCTCCAGCAGACAACCATGTCCCGCCTGGGCA
GAGCATTGATCTGGTGGCCTTGCTCCACAAACCTGCTCCTCCCACTCAAGCCGCAGAAGTCAAC
TCCTTTGAAACGTCCCAGCAGCAGGGCTTCGGCCAGGCCCTTGTCTTCACAAATTCTCAGCACA
ACAATCCAACGGCACCAGGGACTGCAAGCTCCACTCCTGCTAGCTCATACTCTCCTCAGAGTTT
GTCATCCGTCCTTGGCTCAGGATTTGGAGAGCTGGCTCAGTCAAAAATGGTGAACATCTCCAAC
TCCCAGATTTTGGACAAGTTGAAACCACCAGGTTTAAGCCCGTTTCCTGCTGCTTCAAGCACAC
AGCAGAATGACAATGCGAGCCCCCCAGCCACCACTGCTGCTTGGGACCTCAAGCCCTCGGCACC
CCAGCCCTCAGTCCTCAGTCATTTGGACTTCAAATCTCAGCCGGAACCATCTCCAGTTCTCAGC
CAGTTGAGCCAGCGACAGCAACAGCAGAACCAGGCAGTCAGTGTTCCTCCTCCAGGTTTGGAGT
CCTTTCCTTCTCAGACAAAACACCGAGAATCAGCACCGGGAGATGGTCCTTCTACTGTCAACAG
ACTTTTGCAGCTTCCTACCATGGCTGTTGAAAACATTGTATCTGCCCACCAACCACAGCCCAAA
CACATTAAACTCCCTAAGCGCCGGATTCCTCCAGCTTCTAAGGTTCCTGTGTCCGCAGTGGAAA
TGCCCGGGTCTGCAGATATCACAGGGCTGAATGTTCAGTTTGGGGCCCTCGAATTTGGATCAGA
GCCATCTCTCTCTGAGTTTGGATCAACAGCTTCAGCCAGTGAAAATAGCAGTCAGCTTCCTATC
AGCTTGTACCCGAAGTCTTTAAGTGAGCCCTTGAATGCCTCTTTCCCAATGACCAGTGCTGTAC
AGAACCCCACCTACACAACCTCAGTCATTACCTCCTCCACTCTGACCAGCTCGTCCGTGAGCTC
CACTAGCCCAGTAACAACTTGTTCCTCTTACGACCAGAGTTCTGTGCATACCAGGATTGCGTAC
CAAAGCCCTGCAAGCCCAGCGGACGCGGCTCCCGGCTCCGTTGCTAACGGACATGGTGGTGGCC
GAAGTCAGCACACAGTAGACACTCCAAAGAAGACAGACCCTTCTGCCCTTCCGTCTGTGAGCTC
CCTCCCCAGCCCCTCCTCCTGCACTGCACTTCTGCCCCCTTCGTCCCAGCACACTGCCACTTTG
CCCGCCTTGACTCCTGGTGAACTGTCCAGCAGCCCCCTTTCTCAGCTCAGCAGCTCCCTCTCTA
GCCACCAGAGCAGCTTGTCCTCTACCCATGCAACGCGGTCCACAAGCACGCCACACACTCATGC
CAGTGTGGAGAGCACCCCATCCTCAGCTGCCTTCTCAGCAGCCACTTCTGCTCCAAGTGCCCCG
TCCTCAGGGGTTGCCCTGCCTGGGAGCATGAGCACCGTGAGCAGCCTGTGCCTGGGTGGGACCA
CTGTGAGCGCACCTAGCAGCAGTACCAGGGCCACAGCCTTGGTGACCTCAGGCAAAGCACCCCC
AAACCTTCCTCAAGGGGTGCCTCCTCTGCTACACAATCAGTACCTCGTGGGCCCTGGAGGGCTG
CTTCCTGCTTACCCGATCTACGGTTATGATGAGCTCCAGATGCTGCAGTCACGGCTGCCGATGG
ATTACTATGGAATTCCCTTTGCAGCACCCACAGCCCTTGCCAGCCGAGATGGGAATCTAGCTAA
TAATCCATATTCAGGTGATGTCACCAAGTTTGGCCGAGGAGACTCTGCATCCCCTGCACCTCCG
ACGACACCAGCTCAGGCACAGCAGAGCCAGTCTCAGACCCACCACACGGCCCAGCAGCCCTTTT
TGAATCCTGCTCTGCCACCTGGCTACAGCTACACCGGCCTCCCCTACTACACTGGCGTGCCTGG
TGCCTTCCAGTATGGGCCCACTATGTTTGTCCCTCCAACCTCAGCCAAGCAGCACGGTGTGACC
CTCAGCACTCCCCCGACCCCTTTTCAGCAGGCCAGTGGCTATGGGCAGCATGCTTACAGCGCAG
GTTATGACGATTTGACCCAGGGAACAGCGGCAGGAGACTACACCAAGGGTGGCTACGGTGGATC
ATCTCAGGCACCAAACAAGTCGGCTGGTTCTGGGCCTAGCAAAGGGGTATCAGTATCTTCAGGC
ACTGGCTTACCCGATATGACTGGTTCTGTCTACAACAAGACACAGACTTTTGACAAGCAGGGAT
TTCATACAGGGACTCCACCACCTTTCAGCCTGCCCTCTGCCTTGGGCTCCACTGGGCCCCTGGC
TCCTGGCGCAGCCCCCGGCTATGCGCCTGCGCCGTTCCTGCACATCATGCCGGCCCACCAGCAG
CCCCACTCCCAGCTGCTGCACCACCACCTACCACAGGACGCCCCGAGTGGCTCTGGTCAGCGCA
GCCAGCCCAGCTCCCTGCAGCCCAAGTCTCAAGCCTCCAAACCCACCTACGGCAACTCTCCATA
CTGGACAAACTAGATCCTGAAAAGGAGAGGGTGGGCTCTTGGGCAGGGTATACTCTGGGCAGGA
GAGAACACATGGAGCACATTTCTGGGAGCCCGGTGCCCTTCCTAGAATTCTGAGACATAACTGT
CAGCTGAGCCTCTCTATGGGAAGCCTGCCTCCCAGACCCACTATTGTATGTAATGTATTTATGT
ATGTATTTGTAAATGTGATAGAAGCCTGGAAGAGCTGGGCTGTGGCTACGGGTAGCATACAAGT
GTGCTCTCCCGGTCTGGACACCGTTACTATAGCCAAGTAGGCCCCAACCCCACCTTTCTGCCTG
CAGTCTTTCTATGTGACCCCAGCTCAGTGGGCTGCTGGGTGTGCCACTGAAGGACTCGTGGTTT
GGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCACTCCCTGTGAACCATTATGTTTT
TCCCTCTGTAATTACTTCATACTTGTTTTTGAAAAACTGATCCTTTTGTCATTTGTCATGGTCC
CCCTTCCAACAAATCTTAATCTGGAAATAGAAGTGACCCCTGTCCAGCATAAGCCTGGTGCCTA
TATGTCTGCGCACAGCAGGGGCTTCTGCTTTGGGTCTGGTCCTGCTCTAGAGACTTGTCTTTTC
TGACCAACCATTTAAAAAAAAATCTGAACTACGTCTCAGAGATGTTCAGCCAGTCAGCTCCTTT
ATAAAGAAATCAAAGATCTGCTTCCTTCTCAGTGAAAGCCTGTCTCCAAACAAAGGCTCCTTTA
TACCAGTTGTCCTGAGCCAGGTGGGCAACTGTTTCAGGGTTTTCTCTCGCCCAAACTCCACCTA
ATAAAGTTCTGAGAGCATG

hide sequence

RefSeq Acc Id:

XM_017593356 ⟹ XP_017448845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,732 (-)	NCBI
mRatBN7.2	5	56,348,243 - 56,436,766 (-)	NCBI
Rnor_6.0	5	57,534,056 - 57,632,337 (-)	NCBI

Sequence:

show sequence

AACTCCGACCACTCGCAATGCTAGCATCCCCGCCGCCTCCACATAGTCCCTCTCGCTCAGCTCC
CAGAGCTGTGTTAACCAGCCGGGTAACCGCGTTCAAGCTTCAAGTACTGGCTCCGCCCTCTCCC
ATGACGTAGGGATCACGTGACGGGCAGGGCCGCCTCTGCCGCCGCCGCCGCTTTGTAAGAGGCA
CATTGGCAGGTAACGAGCGGCGGCGGCGGCGGCGGGTCCCGAGTCCAACGAGAGCAGCAGCGGC
AACGGCTGAACAGATGCGACTTGCTCAAGTGATCTTTGATAAGAATGATTCAGATTTTGAAGCT
AAAGTTAAACAGCTTATGGAGGTGACGGGGAAAAATCAGGATGAGTGCATCGTGGCCCTGCATG
ACTGTAACGGTGATGTGAACAAAGCCATCAATACACTGCTGGAAGGGAGCTCTGACACCACTTC
ATGGGAGACTGTAGGAGGAAAGAAGAAGAATTTTGGAAGAGAAAGCTCAGAAAACAAAGAAAAC
AGAGAGAAGAGGACAGAGAGAGAAGCAAGTCGAGGACGGGGAAACAACAACCGGAAGGGACGAG
GTGGCAGCCGAGGCCGAGAGTTCAAAGGTGAAGAGAATGGAGTTGATTGCAGCCAAGGAGACAA
ACCTTCAGAGCGGGGCAAGCGGACCCGAGGCAGAGGATTTGGGCGTGGCAGGGGCAGAGGGGCA
GGAAGGCTGTCTGCTCAAAGCATGGGGACATTCAATCCTGCAGACTATTCAGAGTCCATGTCAA
CAGATGGCTGTGGGACAAAGTTGGTAGTTTGGGAAGCTGCTCAGAACGGCACAGATGAGGGACC
TGAAGGGCTGGCAAAGCCTCACAGTATATCTCAGGAGCTGCCAAGTAAAAGTTCTTATGGACTT
AAAGGTGCCTGGAAGAATTCTGTGGAGGAGTGGACAGCAGAAGACTGGACTGAAGATCTTTCTG
AGACAAAAGTATTCACGGCTTCATCCGCTCCAGCAGACAACCATGTCCCGCCTGGGCAGAGCAT
TGATCTGGTGGCCTTGCTCCACAAACCTGCTCCTCCCACTCAAGCCGCAGAAGTCAACTCCTTT
GAAACGTCCCAGCAGCAGGGCTTCGGCCAGGCCCTTGTCTTCACAAATTCTCAGCACAACAATC
CAACGGCACCAGGGACTGCAAGCTCCACTCCTGCTAGCTCATACTCTCCTCAGAGTTTGTCATC
CGTCCTTGGCTCAGGATTTGGAGAGCTGGCTCAGTCAAAAATGGTGAACATCTCCAACTCCCAG
ATTTTGGACAAGTTGAAACCACCAGGTTTAAGCCCGTTTCCTGCTGCTTCAAGCACACAGCAGA
ATGACAATGCGAGCCCCCCAGCCACCACTGCTGCTTGGGACCTCAAGCCCTCGGCACCCCAGCC
CTCAGTCCTCAGTCATTTGGACTTCAAATCTCAGCCGGAACCATCTCCAGTTCTCAGCCAGTTG
AGCCAGCGACAGCAACAGCAGAACCAGGCAGTCAGTGTTCCTCCTCCAGGTTTGGAGTCCTTTC
CTTCTCAGACAAAACACCGAGAATCAGCACCGGGAGATGGTCCTTCTACTGTCAACAGACTTTT
GCAGCTTCCTACCATGGCTGTTGAAAACATTGTATCTGCCCACCAACCACAGCCCAAACACATT
AAACTCCCTAAGCGCCGGATTCCTCCAGCTTCTAAGGTTCCTGTGTCCGCAGTGGAAATGCCCG
GGTCTGCAGATATCACAGGGCTGAATGTTCAGTTTGGGGCCCTCGAATTTGGATCAGAGCCATC
TCTCTCTGAGTTTGGATCAACAGCTTCAGCCAGTGAAAATAGCAGTCAGCTTCCTATCAGCTTG
TACCCGAAGTCTTTAAGTGAGCCCTTGAATGCCTCTTTCCCAATGACCAGTGCTGTACAGAACC
CCACCTACACAACCTCAGTCATTACCTCCTCCACTCTGACCAGCTCGTCCGTGAGCTCCACTAG
CCCAGTAACAACTTGTTCCTCTTACGACCAGAGTTCTGTGCATACCAGGATTGCGTACCAAAGC
CCTGCAAGCCCAGCGGACGCGGCTCCCGGCTCCGTTGCTAACGGACATGGTGGTGGCCGAAGTC
AGCACACAGTAGACACTACTTCATCCGTTCCAGCTCCAAAGAAGACAGACCCTTCTGCCCTTCC
GTCTGTGAGCTCCCTCCCCAGCCCCTCCTCCTGCACTGCACTTCTGCCCCCTTCGTCCCAGCAC
ACTGCCACTTTGCCCGCCTTGACTCCTGGTGAACTGTCCAGCAGCCCCCTTTCTCAGCTCAGCA
GCTCCCTCTCTAGCCACCAGAGCAGCTTGTCCTCTACCCATGCAACGCGGTCCACAAGCACGCC
ACACACTCATGCCAGTGTGGAGAGCACCCCATCCTCAGCTGCCTTCTCAGCAGCCACTTCTGCT
CCAAGTGCCCCGTCCTCAGGGGTTGCCCTGCCTGGGAGCATGAGCACCGTGAGCAGCCTGTGCC
TGGGTGGGACCACTGTGAGCGCACCTAGCAGCAGTACCAGGGCCACAGCCTTGGTGACCTCAGG
CAAAGCACCCCCAAACCTTCCTCAAGGGGTGCCTCCTCTGCTACACAATCAGTACCTCGTGGGC
CCTGGAGGGCTGCTTCCTGCTTACCCGATCTACGGTTATGATGAGCTCCAGATGCTGCAGTCAC
GGCTGCCGATGGATTACTATGGAATTCCCTTTGCAGCACCCACAGCCCTTGCCAGCCGAGATGG
GAATCTAGCTAATAATCCATATTCAGGTGATGTCACCAAGTTTGGCCGAGGAGACTCTGCATCC
CCTGCACCTCCGACGACACCAGCTCAGGCACAGCAGAGCCAGTCTCAGACCCACCACACGGCCC
AGCAGCCCTTTTTGAATCCTGCTCTGCCACCTGGCTACAGCTACACCGGCCTCCCCTACTACAC
TGGCGTGCCTGGTGCCTTCCAGTATGGGCCCACTATGTTTGTCCCTCCAACCTCAGCCAAGCAG
CACGGTGTGACCCTCAGCACTCCCCCGACCCCTTTTCAGCAGGCCAGTGGCTATGGGCAGCATG
CTTACAGCGCAGGTTATGACGATTTGACCCAGGGAACAGCGGCAGGAGACTACACCAAGGGTGG
CTACGGTGGATCATCTCAGGCACCAAACAAGTCGGCTGGTTCTGGGCCTAGCAAAGGGGTATCA
GTATCTTCAGGCACTGGCTTACCCGATATGACTGGTTCTGTCTACAACAAGACACAGACTTTTG
ACAAGCAGGGATTTCATACAGGGACTCCACCACCTTTCAGCCTGCCCTCTGCCTTGGGCTCCAC
TGGGCCCCTGGCTCCTGGCGCAGCCCCCGGCTATGCGCCTGCGCCGTTCCTGCACATCATGCCG
GCCCACCAGCAGCCCCACTCCCAGCTGCTGCACCACCACCTACCACAGGACGCCCCGAGTGGCT
CTGGTCAGCGCAGCCAGCCCAGCTCCCTGCAGCCCAAGTCTCAAGCCTCCAAACCCACCTACGG
CAACTCTCCATACTGGACAAACTAGATCCTGAAAAGGAGAGGGTGGGCTCTTGGGCAGGGTATA
CTCTGGGCAGGAGAGAACACATGGAGCACATTTCTGGGAGCCCGGTGCCCTTCCTAGAATTCTG
AGACATAACTGTCAGCTGAGCCTCTCTATGGGAAGCCTGCCTCCCAGACCCACTATTGTATGTA
ATGTATTTATGTATGTATTTGTAAATGTGATAGAAGCCTGGAAGAGCTGGGCTGTGGCTACGGG
TAGCATACAAGTGTGCTCTCCCGGTCTGGACACCGTTACTATAGCCAAGTAGGCCCCAACCCCA
CCTTTCTGCCTGCAGTCTTTCTATGTGACCCCAGCTCAGTGGGCTGCTGGGTGTGCCACTGAAG
GACTCGTGGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCACTCCCTGTGAA
CCATTATGTTTTTCCCTCTGTAATTACTTCATACTTGTTTTTGAAAAACTGATCCTTTTGTCAT
TTGTCATGGTCCCCCTTCCAACAAATCTTAATCTGGAAATAGAAGTGACCCCTGTCCAGCATAA
GCCTGGTGCCTATATGTCTGCGCACAGCAGGGGCTTCTGCTTTGGGTCTGGTCCTGCTCTAGAG
ACTTGTCTTTTCTGACCAACCATTTAAAAAAAAATCTGAACTACGTCTCAGAGATGTTCAGCCA
GTCAGCTCCTTTATAAAGAAATCAAAGATCTGCTTCCTTCTCAGTGAAAGCCTGTCTCCAAACA
AAGGCTCCTTTATACCAGTTGTCCTGAGCCAGGTGGGCAACTGTTTCAGGGTTTTCTCTCGCCC
AAACTCCACCTAATAAAGTTCTGAGAGCATG

hide sequence

RefSeq Acc Id:

XM_039109838 ⟹ XP_038965766

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,816 (-)	NCBI
mRatBN7.2	5	56,348,243 - 56,436,864 (-)	NCBI

RefSeq Acc Id:

XM_039109842 ⟹ XP_038965770

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,233,355 (-)	NCBI
mRatBN7.2	5	56,348,243 - 56,437,397 (-)	NCBI

RefSeq Acc Id:

XM_063287603 ⟹ XP_063143673

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,229,184 (-)	NCBI

RefSeq Acc Id:

XM_063287604 ⟹ XP_063143674

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,229,189 (-)	NCBI

RefSeq Acc Id:

XM_063287605 ⟹ XP_063143675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,816 (-)	NCBI

RefSeq Acc Id:

XM_063287606 ⟹ XP_063143676

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,233,341 (-)	NCBI

RefSeq Acc Id:

XM_063287607 ⟹ XP_063143677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,750 (-)	NCBI

RefSeq Acc Id:

XM_063287608 ⟹ XP_063143678

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,750 (-)	NCBI

RefSeq Acc Id:

XM_063287609 ⟹ XP_063143679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,233,355 (-)	NCBI

RefSeq Acc Id:

XM_063287610 ⟹ XP_063143680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,816 (-)	NCBI

RefSeq Acc Id:

XM_063287611 ⟹ XP_063143681

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,760 (-)	NCBI

RefSeq Acc Id:

XM_063287612 ⟹ XP_063143682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,229,174 (-)	NCBI

RefSeq Acc Id:

XM_063287613 ⟹ XP_063143683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,750 (-)	NCBI

RefSeq Acc Id:

XM_063287614 ⟹ XP_063143684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,972 (-)	NCBI

RefSeq Acc Id:

XM_063287615 ⟹ XP_063143685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,750 (-)	NCBI

RefSeq Acc Id:

XM_063287616 ⟹ XP_063143686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	61,144,184 - 61,232,727 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101398	(Get FASTA)	NCBI Sequence Viewer
	XP_006238116	(Get FASTA)	NCBI Sequence Viewer
	XP_017448845	(Get FASTA)	NCBI Sequence Viewer
	XP_038965766	(Get FASTA)	NCBI Sequence Viewer
	XP_038965770	(Get FASTA)	NCBI Sequence Viewer
	XP_063143673	(Get FASTA)	NCBI Sequence Viewer
	XP_063143674	(Get FASTA)	NCBI Sequence Viewer
	XP_063143675	(Get FASTA)	NCBI Sequence Viewer
	XP_063143676	(Get FASTA)	NCBI Sequence Viewer
	XP_063143677	(Get FASTA)	NCBI Sequence Viewer
	XP_063143678	(Get FASTA)	NCBI Sequence Viewer
	XP_063143679	(Get FASTA)	NCBI Sequence Viewer
	XP_063143680	(Get FASTA)	NCBI Sequence Viewer
	XP_063143681	(Get FASTA)	NCBI Sequence Viewer
	XP_063143682	(Get FASTA)	NCBI Sequence Viewer
	XP_063143683	(Get FASTA)	NCBI Sequence Viewer
	XP_063143684	(Get FASTA)	NCBI Sequence Viewer
	XP_063143685	(Get FASTA)	NCBI Sequence Viewer
	XP_063143686	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98660	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070607
	ENSRNOP00000070607.2
	ENSRNOP00000070670
	ENSRNOP00000070670.2
	ENSRNOP00000075769
	ENSRNOP00000075769.2

RefSeq Acc Id:

NP_001101398 ⟸ NM_001107928

- UniProtKB:

A0A0U1RRQ3 (UniProtKB/TrEMBL), A6IIU0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMTSVSNDRCRGAREKPQMPTTHAAQSQKQVVQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVT
GKNQDECIVALHDCNGDVNKAINTLLEGSSDTTSWETVGGKKKNFGRESSENKENREKRTEREA
SRGRGNNNRKGRGGSRGREFKGEENGVDCSQGDKPSERGKRTRGRGFGRGRGRGAGRLSAQSMG
TFNPADYSESMSTDGCGTKLVVWEAAQNGTDEGPEGLAKPHSISQELPSKSSYGLKGAWKNSVE
EWTAEDWTEDLSETKVFTASSAPADNHVPPGQSIDLVALLHKPAPPTQAAEVNSFETSQQQGFG
QALVFTNSQHNNPTAPGTASSTPASSYSPQSLSSVLGSGFGELAQSKMVNISNSQILDKLKPPG
LSPFPAASSTQQNDNASPPATTAAWDLKPSAPQPSVLSHLDFKSQPEPSPVLSQLSQRQQQQNQ
AVSVPPPGLESFPSQTKHRESAPGDGPSTVNRLLQLPTMAVENIVSAHQPQPKHIKLPKRRIPP
ASKVPVSAVEMPGSADITGLNVQFGALEFGSEPSLSEFGSTASASENSSQLPISLYPKSLSEPL
NASFPMTSAVQNPTYTTSVITSSTLTSSSVSSTSPVTTCSSYDQSSVHTRIAYQSPASPADAAP
GSVANGHGGGRSQHTVDTTSSVPAPKKTDPSALPSVSSLPSPSSCTALLPPSSQHTATLPALTP
GELSSSPLSQLSSSLSSHQSSLSSTHATRSTSTPHTHASVESTPSSAAFSAATSAPSAPSSGVA
LPGSMSTVSSLCLGGTTVSAPSSSTRATALAKHPQTFLKGCLLCYTISTSWALEGCFLLTRGIY
GYDELQMLQSRLPMDYYGIPFAAPTALASRDGNLANNPYSGDVTKFGRGDSASPAPPTTPAQAQ
QSQSQTHHTAQQPFLNPALPPGYSYTGLPYYTGVPGAFQYGPTMFVPPTSAKQHGVTLSTPPTP
FQQASGYGQHAYSAGYDDLTQGTAAGDYTKGGYGGSSQAPNKSAGSGPSKGVSVSSGTGLPDMT
GSVYNKTQTFDKQGFHTGTPPPFSLPSALGSTGPLAPGAAPGYAPAPFLHIMPAHQQPHSQLLH
HHLPQDAPSGSGQRSQPSSLQPKSQASKPTYGNSPYWTN

hide sequence

RefSeq Acc Id:	XP_006238116 ⟸ XM_006238054
- Peptide Label:	isoform X6
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMTSVSNDRCRGAREKPQMPTTHAAQSQKQVVQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVT GKNQDECIVALHDCNGDVNKAINTLLEGSSDTTSWETVGGKKKNFGRESSENKENREKRTEREA SRGRGNNNRKGRGGSRGREFKGEENGVDCSQGDKPSERGKRTRGRGFGRGRGRGAGRLSAQSMG TFNPADYSESMSTDGCGTKLVVWEAAQNGTDEGPEGLAKPHSISQELPSKSSYGLKGAWKNSVE EWTAEDWTEDLSETKVFTASSAPADNHVPPGQSIDLVALLHKPAPPTQAAEVNSFETSQQQGFG QALVFTNSQHNNPTAPGTASSTPASSYSPQSLSSVLGSGFGELAQSKMVNISNSQILDKLKPPG LSPFPAASSTQQNDNASPPATTAAWDLKPSAPQPSVLSHLDFKSQPEPSPVLSQLSQRQQQQNQ AVSVPPPGLESFPSQTKHRESAPGDGPSTVNRLLQLPTMAVENIVSAHQPQPKHIKLPKRRIPP ASKVPVSAVEMPGSADITGLNVQFGALEFGSEPSLSEFGSTASASENSSQLPISLYPKSLSEPL NASFPMTSAVQNPTYTTSVITSSTLTSSSVSSTSPVTTCSSYDQSSVHTRIAYQSPASPADAAP GSVANGHGGGRSQHTVDTPKKTDPSALPSVSSLPSPSSCTALLPPSSQHTATLPALTPGELSSS PLSQLSSSLSSHQSSLSSTHATRSTSTPHTHASVESTPSSAAFSAATSAPSAPSSGVALPGSMS TVSSLCLGGTTVSAPSSSTRATALVTSGKAPPNLPQGVPPLLHNQYLVGPGGLLPAYPIYGYDE LQMLQSRLPMDYYGIPFAAPTALASRDGNLANNPYSGDVTKFGRGDSASPAPPTTPAQAQQSQS QTHHTAQQPFLNPALPPGYSYTGLPYYTGVPGAFQYGPTMFVPPTSAKQHGVTLSTPPTPFQQA SGYGQHAYSAGYDDLTQGTAAGDYTKGGYGGSSQAPNKSAGSGPSKGVSVSSGTGLPDMTGSVY NKTQTFDKQGFHTGTPPPFSLPSALGSTGPLAPGAAPGYAPAPFLHIMPAHQQPHSQLLHHHLP QDAPSGSGQRSQPSSLQPKSQASKPTYGNSPYWTN hide sequence

RefSeq Acc Id:	XP_017448845 ⟸ XM_017593356
- Peptide Label:	isoform X11
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINTLLEGSSDTTSWETV GGKKKNFGRESSENKENREKRTEREASRGRGNNNRKGRGGSRGREFKGEENGVDCSQGDKPSER GKRTRGRGFGRGRGRGAGRLSAQSMGTFNPADYSESMSTDGCGTKLVVWEAAQNGTDEGPEGLA KPHSISQELPSKSSYGLKGAWKNSVEEWTAEDWTEDLSETKVFTASSAPADNHVPPGQSIDLVA LLHKPAPPTQAAEVNSFETSQQQGFGQALVFTNSQHNNPTAPGTASSTPASSYSPQSLSSVLGS GFGELAQSKMVNISNSQILDKLKPPGLSPFPAASSTQQNDNASPPATTAAWDLKPSAPQPSVLS HLDFKSQPEPSPVLSQLSQRQQQQNQAVSVPPPGLESFPSQTKHRESAPGDGPSTVNRLLQLPT MAVENIVSAHQPQPKHIKLPKRRIPPASKVPVSAVEMPGSADITGLNVQFGALEFGSEPSLSEF GSTASASENSSQLPISLYPKSLSEPLNASFPMTSAVQNPTYTTSVITSSTLTSSSVSSTSPVTT CSSYDQSSVHTRIAYQSPASPADAAPGSVANGHGGGRSQHTVDTTSSVPAPKKTDPSALPSVSS LPSPSSCTALLPPSSQHTATLPALTPGELSSSPLSQLSSSLSSHQSSLSSTHATRSTSTPHTHA SVESTPSSAAFSAATSAPSAPSSGVALPGSMSTVSSLCLGGTTVSAPSSSTRATALVTSGKAPP NLPQGVPPLLHNQYLVGPGGLLPAYPIYGYDELQMLQSRLPMDYYGIPFAAPTALASRDGNLAN NPYSGDVTKFGRGDSASPAPPTTPAQAQQSQSQTHHTAQQPFLNPALPPGYSYTGLPYYTGVPG AFQYGPTMFVPPTSAKQHGVTLSTPPTPFQQASGYGQHAYSAGYDDLTQGTAAGDYTKGGYGGS SQAPNKSAGSGPSKGVSVSSGTGLPDMTGSVYNKTQTFDKQGFHTGTPPPFSLPSALGSTGPLA PGAAPGYAPAPFLHIMPAHQQPHSQLLHHHLPQDAPSGSGQRSQPSSLQPKSQASKPTYGNSPY WTN hide sequence

Ensembl Acc Id:

ENSRNOP00000070607 ⟸ ENSRNOT00000080295

Ensembl Acc Id:

ENSRNOP00000070670 ⟸ ENSRNOT00000080787

Ensembl Acc Id:

ENSRNOP00000075769 ⟸ ENSRNOT00000092581

RefSeq Acc Id:	XP_038965770 ⟸ XM_039109842
- Peptide Label:	isoform X8
- UniProtKB:	A0A0U1RRQ3 (UniProtKB/TrEMBL), A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965766 ⟸ XM_039109838
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2JYI7 (UniProtKB/TrEMBL), A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143679 ⟸ XM_063287609
- Peptide Label:	isoform X4
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143676 ⟸ XM_063287606
- Peptide Label:	isoform X3
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143684 ⟸ XM_063287614
- Peptide Label:	isoform X8
- UniProtKB:	A0A0U1RRQ3 (UniProtKB/TrEMBL), A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143680 ⟸ XM_063287610
- Peptide Label:	isoform X4
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143675 ⟸ XM_063287605
- Peptide Label:	isoform X3
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143681 ⟸ XM_063287611
- Peptide Label:	isoform X4
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143685 ⟸ XM_063287615
- Peptide Label:	isoform X9
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143683 ⟸ XM_063287613
- Peptide Label:	isoform X8
- UniProtKB:	A0A0U1RRQ3 (UniProtKB/TrEMBL), A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143678 ⟸ XM_063287608
- Peptide Label:	isoform X4
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143677 ⟸ XM_063287607
- Peptide Label:	isoform X3
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143686 ⟸ XM_063287616
- Peptide Label:	isoform X10
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143674 ⟸ XM_063287604
- Peptide Label:	isoform X2
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143673 ⟸ XM_063287603
- Peptide Label:	isoform X1
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143682 ⟸ XM_063287612
- Peptide Label:	isoform X5
- UniProtKB:	A6IIU0 (UniProtKB/TrEMBL)

Protein Domains

UBA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JYI7-F1-model_v2	AlphaFold	A0A0G2JYI7	1-1135	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693647

Promoter ID:

EPDNEW_R4171

Type:

multiple initiation site

Name:

Ubap2_1

Description:

ubiquitin-associated protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	57,632,146 - 57,632,206	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311717	AgrOrtholog
BioCyc Gene	G2FUF-41574	BioCyc
Ensembl Genes	ENSRNOG00000052087	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000080295	ENTREZGENE
	ENSRNOT00000080295.3	UniProtKB/TrEMBL
	ENSRNOT00000080787	ENTREZGENE
	ENSRNOT00000080787.3	UniProtKB/TrEMBL
	ENSRNOT00000092581	ENTREZGENE
	ENSRNOT00000092581.3	UniProtKB/TrEMBL
Gene3D-CATH	DNA helicase RuvA subunit, C-terminal domain	UniProtKB/TrEMBL
InterPro	DUF3697_Uba2	UniProtKB/TrEMBL
	TC-DDR_regulator	UniProtKB/TrEMBL
	UBA-like	UniProtKB/TrEMBL
	UBA/transl_elong_EF1B_N_euk	UniProtKB/TrEMBL
KEGG Report	rno:313169	UniProtKB/TrEMBL
NCBI Gene	313169	ENTREZGENE
PANTHER	UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER	UniProtKB/TrEMBL
	UBIQUITIN-ASSOCIATED PROTEIN 2	UniProtKB/TrEMBL
Pfam	DUF3697	UniProtKB/TrEMBL
PhenoGen	Ubap2	PhenoGen
RatGTEx	ENSRNOG00000052087	RatGTEx
SMART	UBA	UniProtKB/TrEMBL
Superfamily-SCOP	UBA_like	UniProtKB/TrEMBL
UniProt	A0A0G2JYD1_RAT	UniProtKB/TrEMBL
	A0A0G2JYI7	ENTREZGENE, UniProtKB/TrEMBL
	A0A0U1RRQ3	ENTREZGENE, UniProtKB/TrEMBL
	A6IIU0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Ubap2	ubiquitin-associated protein 2	Ubap2_predicted	ubiquitin-associated protein 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ubap2_predicted	ubiquitin-associated protein 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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