Zfp418 (zinc finger protein 418) - Rat Genome Database

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Gene: Zfp418 (zinc finger protein 418) Rattus norvegicus
Analyze
Symbol: Zfp418
Name: zinc finger protein 418
RGD ID: 1311663
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; DNA-binding transcription repressor activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in microautophagy and regulation of proteasomal ubiquitin-dependent protein catabolic process. Is active in nucleus. Orthologous to human ZNF416 (zinc finger protein 416); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A; bromobenzene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC292548; RGD1311663; similar to RIKEN cDNA A230102I05; ZNF418
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8175,614,531 - 75,627,367 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl175,614,581 - 75,627,362 (+)EnsemblGRCr8
mRatBN7.2166,581,406 - 66,594,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,581,287 - 66,594,242 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx171,933,018 - 71,944,237 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0180,570,051 - 80,581,270 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0173,764,139 - 73,775,501 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0169,615,413 - 69,629,997 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl169,615,434 - 69,629,913 (+)Ensemblrn6Rnor6.0
Rnor_5.0171,012,400 - 71,025,541 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4164,978,603 - 64,989,822 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera164,337,028 - 64,348,247 (+)NCBICelera
RGSC_v3.1165,056,644 - 65,124,541 (+)NCBI
Cytogenetic Map1q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IDA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. A high-throughput screening identifies ZNF418 as a novel regulator of the ubiquitin-proteasome system and autophagy-lysosomal pathway. Singh SR, etal., Autophagy. 2021 Oct;17(10):3124-3139. doi: 10.1080/15548627.2020.1856493. Epub 2020 Dec 27.
Additional References at PubMed
PMID:29065170  


Genomics

Comparative Map Data
Zfp418
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8175,614,531 - 75,627,367 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl175,614,581 - 75,627,362 (+)EnsemblGRCr8
mRatBN7.2166,581,406 - 66,594,247 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,581,287 - 66,594,242 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx171,933,018 - 71,944,237 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0180,570,051 - 80,581,270 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0173,764,139 - 73,775,501 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0169,615,413 - 69,629,997 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl169,615,434 - 69,629,913 (+)Ensemblrn6Rnor6.0
Rnor_5.0171,012,400 - 71,025,541 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4164,978,603 - 64,989,822 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera164,337,028 - 64,348,247 (+)NCBICelera
RGSC_v3.1165,056,644 - 65,124,541 (+)NCBI
Cytogenetic Map1q12NCBI
ZNF416
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381957,571,566 - 57,578,911 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1957,571,566 - 57,578,911 (-)Ensemblhg38GRCh38
GRCh371958,082,934 - 58,090,279 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361962,774,746 - 62,782,055 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1955,126,512 - 55,133,821 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1954,395,236 - 54,402,545 (-)NCBIHuRef
CHM1_11958,076,885 - 58,084,190 (-)NCBICHM1_1
T2T-CHM13v2.01960,668,494 - 60,675,839 (-)NCBIT2T-CHM13v2.0
Zfp418
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3977,174,352 - 7,186,559 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl77,174,329 - 7,186,561 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3877,171,353 - 7,183,560 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl77,171,330 - 7,183,562 (+)Ensemblmm10GRCm38
MGSCv3777,124,064 - 7,136,271 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3676,775,459 - 6,787,637 (+)NCBIMGSCv36mm8
Celera76,883,866 - 6,896,076 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map74.16NCBI
Znf416
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955584402,957 - 410,256 (+)NCBIChiLan1.0ChiLan1.0
ZNF416
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22063,851,450 - 63,879,754 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11965,638,980 - 65,667,284 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01954,583,428 - 54,590,792 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11963,412,869 - 63,420,231 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1963,412,869 - 63,420,231 (-)EnsemblpanPan2panpan1.1
ZNF416
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1662,039,477 - 62,043,177 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF416
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1649,943,136 - 49,950,935 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660453,031,075 - 3,038,398 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Zfp418
184 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:160
Interacting mature miRNAs:173
Transcripts:ENSRNOT00000020751
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
RH130850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2166,592,255 - 66,592,458 (+)MAPPERmRatBN7.2
Rnor_6.0169,685,495 - 69,685,697NCBIRnor6.0
Rnor_6.0169,628,006 - 69,628,208NCBIRnor6.0
Rnor_5.0171,082,470 - 71,082,672UniSTSRnor5.0
Rnor_5.0171,024,981 - 71,025,183UniSTSRnor5.0
RGSC_v3.4164,989,262 - 64,989,464UniSTSRGSC3.4
RGSC_v3.4165,047,747 - 65,047,946UniSTSRGSC3.4
Celera164,347,687 - 64,347,889UniSTS
Celera164,405,550 - 64,405,749UniSTS
RH 3.4 Map1742.4UniSTS
Cytogenetic Map1q12UniSTS
RH131093  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2166,590,330 - 66,590,530 (+)MAPPERmRatBN7.2
mRatBN7.2166,646,782 - 66,646,982 (+)MAPPERmRatBN7.2
Rnor_6.0169,681,639 - 69,681,838NCBIRnor6.0
Rnor_6.0169,626,081 - 69,626,280NCBIRnor6.0
Rnor_5.0171,078,614 - 71,078,813UniSTSRnor5.0
Rnor_5.0171,023,056 - 71,023,255UniSTSRnor5.0
RGSC_v3.4164,987,337 - 64,987,536UniSTSRGSC3.4
RGSC_v3.4165,044,483 - 65,044,682UniSTSRGSC3.4
Celera164,402,286 - 64,402,485UniSTS
Celera164,345,762 - 64,345,961UniSTS
RH 3.4 Map1742.2UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 78 59 6 342 178 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000020751   ⟹   ENSRNOP00000020751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl175,614,581 - 75,627,362 (+)Ensembl
mRatBN7.2 Ensembl166,581,461 - 66,594,242 (+)Ensembl
Rnor_6.0 Ensembl169,615,434 - 69,629,913 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084806   ⟹   ENSRNOP00000073481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl166,581,287 - 66,594,242 (+)Ensembl
Rnor_6.0 Ensembl169,615,603 - 69,628,566 (+)Ensembl
RefSeq Acc Id: NM_001191620   ⟹   NP_001178549
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,614,717 - 75,625,936 (+)NCBI
mRatBN7.2166,581,597 - 66,592,816 (+)NCBI
Rnor_6.0169,615,603 - 69,628,566 (+)NCBI
Rnor_5.0171,012,400 - 71,025,541 (+)NCBI
Celera164,337,028 - 64,348,247 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006228177   ⟹   XP_006228239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,614,531 - 75,627,367 (+)NCBI
mRatBN7.2166,581,406 - 66,594,247 (+)NCBI
Rnor_6.0169,615,413 - 69,629,997 (+)NCBI
Rnor_5.0171,012,400 - 71,025,541 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103765   ⟹   XP_038959693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8175,614,531 - 75,627,367 (+)NCBI
mRatBN7.2166,581,406 - 66,594,247 (+)NCBI
RefSeq Acc Id: NP_001178549   ⟸   NM_001191620
- UniProtKB: A0A0G2K5M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228239   ⟸   XM_006228177
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000073481   ⟸   ENSRNOT00000084806
Ensembl Acc Id: ENSRNOP00000020751   ⟸   ENSRNOT00000020751
RefSeq Acc Id: XP_038959693   ⟸   XM_039103765
- Peptide Label: isoform X2
Protein Domains
KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVT0-F1-model_v2 AlphaFold D3ZVT0 1-670 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311663 AgrOrtholog
BioCyc Gene G2FUF-60973 BioCyc
Ensembl Genes ENSRNOG00000015271 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000020751 ENTREZGENE
  ENSRNOT00000020751.8 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot
  Classic Zinc Finger UniProtKB/Swiss-Prot
InterPro KRAB UniProtKB/Swiss-Prot
  KRAB_dom_sf UniProtKB/Swiss-Prot
  Znf_C2H2-type UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
NCBI Gene 292548 ENTREZGENE
PANTHER RIKEN CDNA 6720489N17 GENE-RELATED UniProtKB/Swiss-Prot
  ZNF44 PROTEIN UniProtKB/Swiss-Prot
Pfam KRAB UniProtKB/Swiss-Prot
  zf-C2H2 UniProtKB/Swiss-Prot
PhenoGen Zfp418 PhenoGen
PROSITE KRAB UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015271 RatGTEx
SMART KRAB UniProtKB/Swiss-Prot
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/Swiss-Prot
  KRAB domain (Kruppel-associated box) UniProtKB/Swiss-Prot
UniProt A0A0G2K5M4 ENTREZGENE
  D3ZVT0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Zfp418  zinc finger protein 418  RGD1311663_predicted  similar to RIKEN cDNA A230102I05 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1311663_predicted  similar to RIKEN cDNA A230102I05 (predicted)  LOC292548_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC292548_predicted  similar to RIKEN cDNA A230102I05 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL