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Gene: Gpr4 (G protein-coupled receptor 4) Rattus norvegicus

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Symbol:

Gpr4

Name:

G protein-coupled receptor 4

RGD ID:

1311604

Description:

Predicted to enable G protein-coupled receptor activity. Predicted to be involved in several processes, including G protein-coupled receptor signaling pathway; cellular response to acidic pH; and positive regulation of Rho protein signal transduction. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; blood vessel development; and negative regulation of angiogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human GPR4 (G protein-coupled receptor 4); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

G-protein coupled receptor 4; LOC308408; MGC116369

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GPR4 (G protein-coupled receptor 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gpr4 (G protein-coupled receptor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gpr4 (G protein-coupled receptor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GPR4 (G protein-coupled receptor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GPR4 (G protein-coupled receptor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gpr4 (G protein-coupled receptor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GPR4 (G protein-coupled receptor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GPR4 (G protein-coupled receptor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gpr4 (G protein-coupled receptor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gpr4 (G protein-coupled receptor 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KRT32 (keratin 32)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	GPR4 (G protein-coupled receptor 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gpr4 (G protein-coupled receptor 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gpr4 (G protein-coupled receptor 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gnrr-4	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	gpr4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gpr4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	87,993,398 - 88,004,568 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	87,993,430 - 88,006,254 (+)	Ensembl				GRCr8
mRatBN7.2	1	78,865,376 - 78,877,126 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	78,865,409 - 78,876,599 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	84,264,234 - 84,265,722 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	92,821,703 - 92,823,191 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	86,019,316 - 86,020,804 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	80,125,639 - 80,136,786 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	80,135,391 - 80,136,880 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	81,392,318 - 81,403,269 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	78,586,541 - 78,588,029 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	73,337,571 - 73,339,059 (+)	NCBI		Celera
RGSC_v3.1	1	78,664,651 - 78,666,140 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

Azoxymethane (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

capsaicin (ISO)

carbon nanotube (ISO)

carrageenan (ISO)

chlorpyrifos (ISO)

chrysene (ISO)

cobalt dichloride (ISO)

copper(II) chloride (ISO)

Cuprizon (EXP)

dextran sulfate (ISO)

dioxygen (ISO)

lysophosphatidylcholine (ISO)

methamphetamine (EXP)

methimazole (EXP)

methotrexate (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

ozone (ISO)

paracetamol (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

quercitrin (ISO)

SCH 23390 (EXP)

SCH772984 (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

tert-butyl hydroperoxide (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-activating G protein-coupled receptor signaling pathway (IBA,IEA,ISO,ISS)

angiogenesis involved in wound healing (ISO)

cellular response to acidic pH (ISO)

G protein-coupled receptor signaling pathway (IEA,ISO)

glomerular mesangial cell development (ISO)

negative regulation of angiogenesis (ISO)

phospholipase C-activating G protein-coupled receptor signaling pathway (ISO)

positive regulation of inflammatory response (ISO,ISS)

positive regulation of Rho protein signal transduction (ISO)

regulation of cell adhesion (ISO,ISS)

regulation of vascular permeability (ISO,ISS)

response to acidic pH (IEA,ISO,ISS)

signal transduction (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IEA,ISO,ISS)

Molecular Function

G protein-coupled receptor activity (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12955148	PMID:17145776	PMID:17462861	PMID:20211729	PMID:22110680	PMID:29894771	PMID:31956173	PMID:32566653	PMID:38936540

Genomics

Comparative Map Data

Gpr4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	87,993,398 - 88,004,568 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	87,993,430 - 88,006,254 (+)	Ensembl				GRCr8
mRatBN7.2	1	78,865,376 - 78,877,126 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	78,865,409 - 78,876,599 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	84,264,234 - 84,265,722 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	92,821,703 - 92,823,191 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	86,019,316 - 86,020,804 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	80,125,639 - 80,136,786 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	80,135,391 - 80,136,880 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	81,392,318 - 81,403,269 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	78,586,541 - 78,588,029 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	73,337,571 - 73,339,059 (+)	NCBI		Celera
RGSC_v3.1	1	78,664,651 - 78,666,140 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

GPR4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	45,589,764 - 45,602,212 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	45,589,764 - 45,602,556 (-)	Ensembl			hg38	GRCh38
GRCh37	19	46,093,022 - 46,105,470 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	50,784,865 - 50,787,557 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	50,784,864 - 50,787,557	NCBI
Celera	19	42,899,136 - 42,911,570 (-)	NCBI		Celera
Cytogenetic Map	19	q13.32	NCBI
HuRef	19	42,522,224 - 42,534,658 (-)	NCBI		HuRef
CHM1_1	19	46,096,300 - 46,108,733 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	48,417,036 - 48,429,476 (-)	NCBI		T2T-CHM13v2.0

Gpr4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	18,946,463 - 18,958,101 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	18,946,463 - 18,958,099 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	19,212,538 - 19,224,176 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	19,212,538 - 19,224,174 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	19,797,887 - 19,809,525 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	18,371,060 - 18,382,698 (+)	NCBI		MGSCv36	mm8
Celera	7	16,634,236 - 16,637,031 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	9.46	NCBI

Gpr4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955574	86,494 - 87,582 (-)	Ensembl
ChiLan1.0	NW_004955574	85,619 - 87,928 (-)	NCBI	ChiLan1.0	ChiLan1.0

GPR4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	51,751,034 - 51,763,566 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	53,622,332 - 53,634,999 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	42,594,996 - 42,608,032 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	51,136,128 - 51,153,410 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	51,137,138 - 51,138,226 (-)	Ensembl			panPan2	panpan1.1

GPR4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	109,963,001 - 109,974,798 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	109,447,845 - 109,459,640 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	110,496,036 - 110,507,845 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	110,496,054 - 110,506,310 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	110,171,544 - 110,183,332 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	109,805,926 - 109,817,699 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	110,675,080 - 110,686,875 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gpr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	17,651,868 - 17,660,317 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	1,999,340 - 2,000,428 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	1,999,218 - 2,001,176 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPR4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	51,968,814 - 51,979,461 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	51,968,310 - 51,979,931 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GPR4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	39,038,910 - 39,054,524 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	39,039,041 - 39,040,129 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	18,662,295 - 18,674,080 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gpr4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	7,575,758 - 7,576,846 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624832	7,566,645 - 7,579,497 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gpr4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	171,395,258 - 171,406,155 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gpr4
57 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	37
Count of miRNA genes:	35
Interacting mature miRNAs:	36
Transcripts:	ENSRNOT00000021893
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat

Markers in Region

UniSTS:498495

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	78,875,661 - 78,876,201 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	80,135,900 - 80,136,439	NCBI	Rnor6.0
Rnor_5.0	1	81,402,383 - 81,402,922	UniSTS	Rnor5.0
RGSC_v3.4	1	78,587,144 - 78,587,683	UniSTS	RGSC3.4
Celera	1	73,338,174 - 73,338,713	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	90	89	58	79	58	6	341	179	11	136	80	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021893 ⟹ ENSRNOP00000021894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	87,993,430 - 88,005,186 (+)	Ensembl
mRatBN7.2 Ensembl	1	78,865,409 - 78,876,599 (+)	Ensembl
Rnor_6.0 Ensembl	1	80,135,391 - 80,136,880 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141286 ⟹ ENSRNOP00000107787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	87,994,705 - 88,005,377 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153217 ⟹ ENSRNOP00000101552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	87,993,430 - 88,006,254 (+)	Ensembl

RefSeq Acc Id:

NM_001025680 ⟹ NP_001020851

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	88,003,079 - 88,004,567 (+)	NCBI
mRatBN7.2	1	78,875,059 - 78,876,547 (+)	NCBI
Rnor_6.0	1	80,135,297 - 80,136,785 (+)	NCBI
Rnor_5.0	1	81,392,318 - 81,403,269 (+)	NCBI
RGSC_v3.4	1	78,586,541 - 78,588,029 (+)	RGD
Celera	1	73,337,571 - 73,339,059 (+)	RGD

Sequence:

show sequence

TATTTTTCTGGTGCCCCCATCTTTGCGCTCTGGTTGTTGTGCAGAAACCCCCACTGACATTAGT
CCCACCTCTTATCCTATCTCCATCACTCCTTGACGTTCTTCCTCTCAAGTTCTCCTTTTGCTTA
GCCTACCACAAAGCAACTCGGATCTCACTCCTTGTGAACTGTCTCCTGTGATGCTTCCCTGAGC
CTCCAAAGAGGGGGCTCAGGGGGCCTGATGGCCTCCCGCCCCCCGTGGCCCTGTAGCCCCAGTG
GGCCAGGGGAAGCGCCTGGGAAGTCCCATCGCCCAGGATGGACAACAGCACGGGCACGTGGGAG
GGCTGCCATGTGGACTCTCGAGTGGACCACCTCTTCCCACCATCCCTCTACATCTTCGTCATCG
GGGTGGGGCTGCCCACCAACTGCCTGGCCCTGTGGGCAGCCTACCGCCAGGTGCGCCAGCGCAA
TGAGCTGGGCGTCTACCTGATGAACTTGAGCATCGCAGACCTGCTGTACATCTGTACGCTGCCG
CTGTGGGTCGACTACTTCCTCCACCATGACAACTGGATCCACGGCCCCGGCTCCTGCAAGCTCT
TTGGCTTCATCTTCTACAGCAACATCTACATCAGCATCGCCTTCCTGTGCTGCATCTCCGTGGA
CCGCTACCTGGCTGTGGCCCATCCGCTGCGCTTTGCGCGCCTGCGCCGGGTCAAGACAGCAGTA
GCTGTGAGCTCCGTGGTCTGGGCCACCGAGCTAGGCGCCAACTCGGCACCGCTCTTTCATGACG
AGCTCTTTCGTGATCGCTACAACCACACCTTCTGCTTCGAGAAGTTCCCCATGGAGCGCTGGGT
GGCCTGGATGAACCTGTACCGCGTCTTTGTGGGGTTCCTCTTCCCCTGGGCACTCATGTTGCTG
TGCTACCGCGGCATCCTGCGGGCCGTACAGAGCAGTGTGTCCACCGAGCGCCAGGAGAAAGTCA
AGATCAAACGCCTGGCCCTGAGCCTCATCGCCATCGTGCTGGTGTGCTTTGCACCCTACCATGC
TCTCTTGCTGTCTCGCAGCGCTGTCTATCTGGGCCGGCCCTGGGACTGTGGCTTCGAGGAGCGA
GTCTTCTCTGCCTACCACAGCTCCCTAGCCTTCACCAGCCTCAATTGCGTGGCTGACCCCATCC
TCTACTGCCTGGTCAACGAGGGTGCCCGTAGTGACGTGGCCAAAGCCCTGCACAACCTCCTCCG
CTTCCTGGCCAGCAACAAGCCCCAGGAGATGGCCAATGCTTCCCTCACCCTGGAGACACCATTG
ACCTCCAAGAGGAGCACCACCGGCAAAACGTCTGGGGCTGTCTGGGCAGTGCCTCCCACTGCCC
AGGGGGACCAGGTGCCACTGAAGGTGCTGCTGCCCCCGGCACAGTGAGCCCCATGCCCAACTGT
CATCCTGCACCCTCCCCATTGTATGCAAATGTATGTAAATATGGCCATGTGGATATTCATACGA
ATACAAGAGAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006228418 ⟹ XP_006228480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	87,993,398 - 88,004,568 (+)	NCBI
mRatBN7.2	1	78,865,376 - 78,877,126 (+)	NCBI
Rnor_6.0	1	80,125,639 - 80,136,786 (+)	NCBI
Rnor_5.0	1	81,392,318 - 81,403,269 (+)	NCBI

Sequence:

show sequence

ACTCCAGCCCCGGGCCAGGGGTTGTCGCTGCTCTCCTGCCCCGCGGGGGCGCCCGCCGGGTCCC
CGCGCTGCGCAGAGTCGGGACCAAGTCACAGACAACGGTCGCCCAGCCCAGCCTCGGAGCAGGC
CTAGTGACCTCAGCTATCAGTACAGTCGTGAGTGGGACAACCTCATCTCCACTCCTCAGTCTCC
ACCAGGATCAACTGAGTCTCCTGGAACCCCCTTCGGAGTCCCCCTCCTACCCACAATCCTCTTG
TGCTCCGCCACTTACTCACCTTCCTGTTTCCTAGCATCCCTTCCTACAGTCACCAGCCCTTACA
AGCCCTTCCTCTTTGCCCATCCCCAGAGGAGACCTCACTTTCCTTCCCCCATTGGTGACTTTAC
ATAGTTCTCTGTTTCCTGCTGCGGTCCTAGCAGATGCCAGCATTCTAAGTTGCATCCTGCCAAC
TCTGTAACTTCTCTCAAAGCTCCCCTGTGTCTTCCCTTAGTGTTCTAGAACATTCAATCCCACT
GGTACTTCATCATGTCCCTATTGACAATAAGCATGACACCTCTGGTGTCTTCATCTCCCCCGTA
AACACTGCCTTCACCTATTTTTCTGGTGCCCCCATCTTTGCGCTCTGGTTGTTGTGCAGAAACC
CCCACTGACATTAGTCCCACCTCTTATCCTATCTCCATCACTCCTTGACGTTCTTCCTCTCAAG
TTCTCCTTTTGCTTAGCCTACCACAAAGCAACTCGGATCTCACTCCTTGTGAACTGTCTCCTGT
GATGCTTCCCTGAGCCTCCAAAGAGGGGGCTCAGGGGGCCTGATGGCCTCCCGCCCCCCGTGGC
CCTGTAGCCCCAGTGGGCCAGGGGAAGCGCCTGGGAAGTCCCATCGCCCAGGATGGACAACAGC
ACGGGCACGTGGGAGGGCTGCCATGTGGACTCTCGAGTGGACCACCTCTTCCCACCATCCCTCT
ACATCTTCGTCATCGGGGTGGGGCTGCCCACCAACTGCCTGGCCCTGTGGGCAGCCTACCGCCA
GGTGCGCCAGCGCAATGAGCTGGGCGTCTACCTGATGAACTTGAGCATCGCAGACCTGCTGTAC
ATCTGTACGCTGCCGCTGTGGGTCGACTACTTCCTCCACCATGACAACTGGATCCACGGCCCCG
GCTCCTGCAAGCTCTTTGGCTTCATCTTCTACAGCAACATCTACATCAGCATCGCCTTCCTGTG
CTGCATCTCCGTGGACCGCTACCTGGCTGTGGCCCATCCGCTGCGCTTTGCGCGCCTGCGCCGG
GTCAAGACAGCAGTAGCTGTGAGCTCCGTGGTCTGGGCCACCGAGCTAGGCGCCAACTCGGCAC
CGCTCTTTCATGACGAGCTCTTTCGTGATCGCTACAACCACACCTTCTGCTTCGAGAAGTTCCC
CATGGAGCGCTGGGTGGCCTGGATGAACCTGTACCGCGTCTTTGTGGGGTTCCTCTTCCCCTGG
GCACTCATGTTGCTGTGCTACCGCGGCATCCTGCGGGCCGTACAGAGCAGTGTGTCCACCGAGC
GCCAGGAGAAAGTCAAGATCAAACGCCTGGCCCTGAGCCTCATCGCCATCGTGCTGGTGTGCTT
TGCACCCTACCATGCTCTCTTGCTGTCTCGCAGCGCTGTCTATCTGGGCCGGCCCTGGGACTGT
GGCTTCGAGGAGCGAGTCTTCTCTGCCTACCACAGCTCCCTAGCCTTCACCAGCCTCAATTGCG
TGGCTGACCCCATCCTCTACTGCCTGGTCAACGAGGGTGCCCGTAGTGACGTGGCCAAAGCCCT
GCACAACCTCCTCCGCTTCCTGGCCAGCAACAAGCCCCAGGAGATGGCCAATGCTTCCCTCACC
CTGGAGACACCATTGACCTCCAAGAGGAGCACCACCGGCAAAACGTCTGGGGCTGTCTGGGCAG
TGCCTCCCACTGCCCAGGGGGACCAGGTGCCACTGAAGGTGCTGCTGCCCCCGGCACAGTGAGC
CCCATGCCCAACTGTCATCCTGCACCCTCCCCATTGTATGCAAATGTATGTAAATATGGCCATG
TGGATATTCATACGAATACAAGAGAAAAATGAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001020851	(Get FASTA)	NCBI Sequence Viewer
	XP_006228480	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99196	(Get FASTA)	NCBI Sequence Viewer
	EDM08222	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021894.4
	ENSRNOP00000101552
GenBank Protein	Q4KLH9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020851 ⟸ NM_001025680

- UniProtKB:

Q4KLH9 (UniProtKB/Swiss-Prot), A6J8L2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDNSTGTWEGCHVDSRVDHLFPPSLYIFVIGVGLPTNCLALWAAYRQVRQRNELGVYLMNLSIA
DLLYICTLPLWVDYFLHHDNWIHGPGSCKLFGFIFYSNIYISIAFLCCISVDRYLAVAHPLRFA
RLRRVKTAVAVSSVVWATELGANSAPLFHDELFRDRYNHTFCFEKFPMERWVAWMNLYRVFVGF
LFPWALMLLCYRGILRAVQSSVSTERQEKVKIKRLALSLIAIVLVCFAPYHALLLSRSAVYLGR
PWDCGFEERVFSAYHSSLAFTSLNCVADPILYCLVNEGARSDVAKALHNLLRFLASNKPQEMAN
ASLTLETPLTSKRSTTGKTSGAVWAVPPTAQGDQVPLKVLLPPAQ

hide sequence

RefSeq Acc Id:

XP_006228480 ⟸ XM_006228418

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDNSTGTWEGCHVDSRVDHLFPPSLYIFVIGVGLPTNCLALWAAYRQVRQRNELGVYLMNLSIA
DLLYICTLPLWVDYFLHHDNWIHGPGSCKLFGFIFYSNIYISIAFLCCISVDRYLAVAHPLRFA
RLRRVKTAVAVSSVVWATELGANSAPLFHDELFRDRYNHTFCFEKFPMERWVAWMNLYRVFVGF
LFPWALMLLCYRGILRAVQSSVSTERQEKVKIKRLALSLIAIVLVCFAPYHALLLSRSAVYLGR
PWDCGFEERVFSAYHSSLAFTSLNCVADPILYCLVNEGARSDVAKALHNLLRFLASNKPQEMAN
ASLTLETPLTSKRSTTGKTSGAVWAVPPTAQGDQVPLKVLLPPAQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000021894 ⟸ ENSRNOT00000021893

Ensembl Acc Id:

ENSRNOP00000101552 ⟸ ENSRNOT00000153217

Ensembl Acc Id:

ENSRNOP00000107787 ⟸ ENSRNOT00000141286

Protein Domains

G-protein coupled receptors family 1 profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KLH9-F1-model_v2	AlphaFold	Q4KLH9	1-365	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311604	AgrOrtholog
BioCyc Gene	G2FUF-60522	BioCyc
Ensembl Genes	ENSRNOG00000016362	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000021893.7	UniProtKB/Swiss-Prot
	ENSRNOT00000153217	ENTREZGENE
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7383735	IMAGE-MGC_LOAD
InterPro	GPCR_Rhodpsn	UniProtKB/Swiss-Prot
	GPCR_Rhodpsn_7TM	UniProtKB/Swiss-Prot
	GPR4_orph	UniProtKB/Swiss-Prot
KEGG Report	rno:308408	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116369	IMAGE-MGC_LOAD
NCBI Gene	308408	ENTREZGENE
PANTHER	G-PROTEIN COUPLED RECEPTOR 4	UniProtKB/Swiss-Prot
	LYSOPHOSPHATIDIC ACID RECEPTOR 5/SPHINGOSYLPHOSPHORYLCHOLINE RECEPTOR	UniProtKB/Swiss-Prot
Pfam	7tm_1	UniProtKB/Swiss-Prot
PhenoGen	Gpr4	PhenoGen
PRINTS	GPCRRHODOPSN	UniProtKB/Swiss-Prot
	GPR4RECEPTOR	UniProtKB/Swiss-Prot
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/Swiss-Prot
	G_PROTEIN_RECEP_F1_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000016362	RatGTEx
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/Swiss-Prot
UniProt	A6J8L2	ENTREZGENE, UniProtKB/TrEMBL
	GPR4_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Gpr4	G protein-coupled receptor 4	Gpr4_predicted	G protein-coupled receptor 4 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Gpr4_predicted	G protein-coupled receptor 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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