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Gene: Stxbp5l (syntaxin binding protein 5L) Rattus norvegicus

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Symbol:

Stxbp5l

Name:

syntaxin binding protein 5L

RGD ID:

1311561

Description:

Predicted to enable GTPase activator activity; myosin II binding activity; and syntaxin binding activity. Predicted to be involved in Golgi to plasma membrane transport; exocytosis; and regulation of synaptic vesicle exocytosis. Predicted to act upstream of or within glucose homeostasis; negative regulation of insulin secretion; and regulation of exocytosis. Predicted to be located in membrane and secretory granule. Predicted to be part of SNARE complex. Predicted to be active in neuromuscular junction; neuronal dense core vesicle; and plasma membrane. Orthologous to human STXBP5L (syntaxin binding protein 5L); INTERACTS WITH 17alpha-ethynylestradiol; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC288080; syntaxin binding protein 5-like; syntaxin-binding protein 5-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STXBP5L (syntaxin binding protein 5L)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Stxbp5l (syntaxin binding protein 5-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stxbp5l (syntaxin binding protein 5L)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STXBP5L (syntaxin binding protein 5L)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STXBP5L (syntaxin binding protein 5L)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stxbp5l (syntaxin binding protein 5L)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STXBP5L (syntaxin binding protein 5L)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STXBP5L (syntaxin binding protein 5L)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stxbp5l (syntaxin binding protein 5L)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Stxbp5l (syntaxin binding protein 5L)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EPHB4 (EPH receptor B4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	STXBP5L (syntaxin binding protein 5L)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	STXBP5L (syntaxin binding protein 5L)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Stxbp5l (syntaxin binding protein 5-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Stxbp5l (syntaxin binding protein 5-like)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stxbp5l (syntaxin binding protein 5-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stxbp5l (syntaxin binding protein 5-like)	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Tomosyn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Tomosyn	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SRO7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SRO77	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tom-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tom-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	stxbp5l	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Allele / Splice:

Stxbp5l^{Tn(sb-T2/Bart3)2.202Mcwi}

Genetic Models:

F344-Stxbp5l^{Tn(sb-T2/Bart3)2.202Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	76,838,839 - 77,167,852 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	76,838,900 - 77,161,306 (+)	Ensembl				GRCr8
mRatBN7.2	11	63,334,667 - 63,654,270 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	63,334,667 - 63,657,014 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	72,147,113 - 72,466,676 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	64,809,343 - 65,128,900 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	63,858,949 - 64,163,917 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	66,246,624 - 66,566,331 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	66,316,606 - 66,566,331 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	69,337,663 - 69,661,463 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	65,129,572 - 65,455,115 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	62,831,916 - 63,131,512 (+)	NCBI		Celera
RGSC_v3.1	11	65,147,137 - 65,512,704 (+)	NCBI
Cytogenetic Map	11	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,4,4'-trichlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

bromobenzene (EXP)

coumarin (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

ethanol (ISO)

FR900359 (ISO)

furan (EXP)

indometacin (ISO)

levonorgestrel (ISO)

maneb (ISO)

methoxychlor (EXP)

okadaic acid (ISO)

paraquat (ISO)

PCB138 (ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

testosterone undecanoate (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

exocytosis (IBA,IEA)

glucose homeostasis (ISO)

Golgi to plasma membrane transport (IBA)

negative regulation of insulin secretion (ISO)

positive regulation of protein secretion (ISO)

protein transport (IEA)

regulation of exocytosis (ISO)

regulation of synaptic vesicle exocytosis (IEA,ISO)

Cellular Component

cytoplasm (IBA,IEA)

neuromuscular junction (IEA,ISO)

neuronal dense core vesicle (IEA,ISO)

plasma membrane (IBA,IEA,ISO)

Molecular Function

GTPase activator activity (IBA)

myosin II binding (IBA)

syntaxin binding (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:21330375	PMID:21998599	PMID:24744148	PMID:25002582	PMID:28746398

Genomics

Comparative Map Data

Stxbp5l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	76,838,839 - 77,167,852 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	76,838,900 - 77,161,306 (+)	Ensembl				GRCr8
mRatBN7.2	11	63,334,667 - 63,654,270 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	63,334,667 - 63,657,014 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	72,147,113 - 72,466,676 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	64,809,343 - 65,128,900 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	63,858,949 - 64,163,917 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	66,246,624 - 66,566,331 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	66,316,606 - 66,566,331 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	69,337,663 - 69,661,463 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	65,129,572 - 65,455,115 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	62,831,916 - 63,131,512 (+)	NCBI		Celera
RGSC_v3.1	11	65,147,137 - 65,512,704 (+)	NCBI
Cytogenetic Map	11	q21	NCBI

STXBP5L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	120,908,205 - 121,424,761 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	120,908,072 - 121,424,761 (+)	Ensembl			hg38	GRCh38
GRCh37	3	120,627,052 - 121,143,608 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	122,109,609 - 122,621,338 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	122,109,772 - 122,621,336	NCBI
Celera	3	119,036,797 - 119,553,405 (+)	NCBI		Celera
Cytogenetic Map	3	q13.33	NCBI
HuRef	3	118,001,087 - 118,518,020 (+)	NCBI		HuRef
CHM1_1	3	120,590,662 - 121,107,318 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	123,628,071 - 124,144,685 (+)	NCBI		T2T-CHM13v2.0

Stxbp5l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	36,927,437 - 37,205,377 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	36,935,304 - 37,205,324 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	37,107,075 - 37,385,015 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	37,114,942 - 37,384,962 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	37,107,393 - 37,385,044 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	37,053,135 - 37,304,162 (-)	NCBI		MGSCv36	mm8
Celera	16	37,516,531 - 37,793,303 (-)	NCBI		Celera
Cytogenetic Map	16	B3	NCBI
cM Map	16	26.32	NCBI

Stxbp5l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	20,390,060 - 20,760,043 (+)	Ensembl
ChiLan1.0	NW_004955427	20,390,060 - 20,760,043 (+)	NCBI	ChiLan1.0	ChiLan1.0

STXBP5L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	118,876,875 - 119,384,107 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	118,881,653 - 119,388,885 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	118,022,061 - 118,529,311 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	124,932,104 - 125,440,179 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	124,932,110 - 125,434,515 (+)	Ensembl			panPan2	panpan1.1

STXBP5L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	24,320,625 - 24,702,782 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	24,320,650 - 24,697,153 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	24,348,396 - 24,732,582 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	24,559,393 - 24,947,448 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	24,559,417 - 24,940,776 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	24,360,228 - 24,745,739 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	24,400,286 - 24,781,893 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	24,964,788 - 25,344,701 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stxbp5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	129,630,023 - 129,958,430 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936536	7,563,607 - 7,886,038 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936536	7,563,585 - 7,885,908 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STXBP5L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	139,123,209 - 139,445,470 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	139,116,931 - 139,491,227 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	148,628,557 - 148,835,696 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STXBP5L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	59,460,278 - 59,938,228 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	59,465,870 - 59,938,129 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	106,369,563 - 106,865,041 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stxbp5l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	26,820,018 - 27,305,447 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624731	26,815,873 - 27,305,344 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Stxbp5l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	22,038,845 - 22,210,550 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Stxbp5l
2222 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	349
Count of miRNA genes:	150
Interacting mature miRNAs:	176
Transcripts:	ENSRNOT00000041715, ENSRNOT00000042630, ENSRNOT00000048936, ENSRNOT00000068059, ENSRNOT00000072159, ENSRNOT00000073264, ENSRNOT00000075613
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70208	Niddm22	Non-insulin dependent diabetes mellitus QTL 22	3.61		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	73308487	96070872	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	46443168	91443168	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
2298551	Neuinf10	Neuroinflammation QTL 10	3.7		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	11	58931822	92356038	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	68599321	96497754	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat

Markers in Region

BF386895

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	120,051,216 - 120,051,429 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	123,895,153 - 123,895,365	NCBI	Rnor6.0
Rnor_5.0	2	143,507,302 - 143,507,514	UniSTS	Rnor5.0
RGSC_v3.4	2	123,704,313 - 123,704,525	UniSTS	RGSC3.4
Celera	11	63,039,059 - 63,039,271	UniSTS
Celera	2	115,006,076 - 115,006,288	UniSTS
Cytogenetic Map	11	q22	UniSTS

AU049762

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Celera	11	62,886,468 - 62,886,675	UniSTS
Cytogenetic Map	11	q22	UniSTS

D7S1526

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	11	66,306,768 - 66,308,201	NCBI	Rnor6.0
Rnor_5.0	11	69,397,807 - 69,399,236	UniSTS	Rnor5.0
Celera	20	48,035,172 - 48,035,559	UniSTS
Celera	11	62,885,078 - 62,886,503	UniSTS
Cytogenetic Map	11	q22	UniSTS

Genetic Models

This gene Stxbp5l is modified in the following models/strains:

F344-Stxbp5l^{Tn(sb-T2/Bart3)2.202Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
13	9	29	142	71	68	39	27	39	6	203	82	6	121	61	76	29	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041715 ⟹ ENSRNOP00000044583

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	76,840,102 - 77,161,306 (+)	Ensembl
mRatBN7.2 Ensembl	11	63,334,667 - 63,657,014 (+)	Ensembl
Rnor_6.0 Ensembl	11	66,316,606 - 66,566,331 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000131493 ⟹ ENSRNOP00000101017

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	76,838,900 - 77,046,500 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139253 ⟹ ENSRNOP00000101329

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	76,840,102 - 77,161,306 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153449 ⟹ ENSRNOP00000099176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	76,840,102 - 77,161,306 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161892 ⟹ ENSRNOP00000103535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	76,912,068 - 77,160,664 (+)	Ensembl

RefSeq Acc Id:

NM_001271250 ⟹ NP_001258179

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	76,840,102 - 77,159,663 (+)	NCBI
mRatBN7.2	11	63,334,667 - 63,654,270 (+)	NCBI
Rnor_6.0	11	66,246,624 - 66,566,331 (+)	NCBI
Rnor_5.0	11	69,337,663 - 69,661,463 (+)	NCBI
Celera	11	62,831,916 - 63,131,512 (+)	NCBI

Sequence:

show sequence

AAATGAAGAAGTTTAATTTCCGAAAAGTTTTGGATGGCTTAACTGCCTCTTCCCCCGGCAGTGG
TAGCAGCAGCGGCAGTAATAGTGGTGGGGCTGGAAGTGGCTCCGTCCATCCTGGAGGGACTGCA
GGGGTTCTGAGAGAGGGGATCCAGGAAAGCCTCATCTCCGAGTGTTTCCAGATTTGCAAGACAG
TTCGGCACGGTTTTCCCTATCAGCCCACAGCATTGGCCTTTGATCCAGTCCAGAAAATCCTGGC
TATTGGAACGAGAACAGGTGCTATACGAATACTTGGGAGGCCTGGTGTTGACTGTTACTGCCAA
CATGAGAGTGGGGCGGCTGTCTTGCAGCTCCAATTCCTGATCAATGAGGGCGCTTTGGTCAGTG
CGAGTTCAGATGACACACTTCATTTGTGGAATCTGAGACAGAAAAGGCCGGCTATTCTCCATTC
TCTTAAGTTTAACAGAGAACGAATTACTTACTGTCATCTACCTTTCCAGAGTAAATGGCTCTAT
GTTGGAACAGAAAGAGGAAATACACATATTGTAAATATTGAATCTTTCATTCTTTCTGGATATG
TCATCATGTGGAACAAGGCAATTGAGCTCTCCACCAAGACTCATCCAGGCCCAGTTGTACATCT
AAGTGATAGCCCAAGAGATGAAGGAAAACTGTTAATAGGTTATGAAAATGGCACTGTGGTATTC
TGGGACTTGAAATCTAAAAGAGCAGAACTGAGAGTTTATTATGATGAGGCTATTCATTCAATTG
ATTGGCATCATGAGGGCAAACAATTCATGTGCAGCCACTCAGATGGTAGCTTGACTTTATGGAA
CCTGAAAAGCCCAAGTCGCCCTTTCCAAACCACAGTTCCACATGGAAAAAGTCAAAGAGAAGGA
AGAAAGTCTGAATCTTGTAAACCTATTCTGAAAGTAGAGTACAAAACGTGCAGGAACAGTGAAC
CATTTATAATATTCTCTGGTGGGTTGTCATATGACAAAGCTTGCAGAAGACCAAGTTTAACCAT
CATGCATGGGAAAGCAATTACAGTACTTGAAATGGATCATCCTATTGTTGAATTTCTAACTTTA
TGTGAAACGCCCTATCCCAATGAGTTTCAAGAACCCTATGCTGTTGCAGTACTTCTAGAGAAAG
ATCTCATCGTAGTTGATCTAACACAAACCAATTTTCCAATCTTTGAAAATCCATATCCAATGGA
CATTCATGAGTCACCAGTTACATGCACAGCATATTTTGCCGATTGCCCTCCAGATTTGATTCTA
GTACTCTATTCTATAGGAGTCAAGCATAAAAAACAAGGATACAGTAATAAGGAATGGCCAGTAA
GTGGAGGAGCTTGGAATCTTGGAGCACAAACGTATCCAGAAATTATTATTACTGGTCATGCTGA
TGGAACAATAAAATTTTGGGATGCTTCAGCAATGACACTGCAGATGTTGTACAAGCTAAAAACT
TCAAAAGTATTTGAAAAGCAGAAGGTGGGAGATGGCAAACAGACGTGTGAGATTGTAGAAGAAG
ATCCCTTTGCTGTTCAGATGATTTACTGGTGTCCAGAGAGCAGAATATTTTGTGTATCTGGGGT
CTCTGCATATGTCATAATTTATAAATTCAGCAGACATGAAATCACAGCAGAAATAGTGTCATTA
GAGGTACGACTTCAGTGCGATGTTGAAGACATTATTACTCCTGAGCCAGAAACAAGTCCTCCAT
TTCCAGATCTCTCCTCTCAACTTCCTTCTTCAAGGAGTCTTTCTGGAAGCACTAATACTGTGTC
TAGTGAAGGCGTGACGAAGGACAGCATCCCATGCCTCAGTGTTAAAACACGGCCAGTGCGCATG
CCGCCGGGCTATCAAGCGGATCTTGTTATTCAGTTGGTGTGGGTAGATGGCGAGCCGCCTCAGC
AGATCACCAGCCTCGCTGTGAGCTCGGCATACGGAATAGTTGCATTTGGAAACTGCACGGGGTT
GGTTGTGGTAGATTTCATCCAGAAGACAGTACTGTTAAGCATGGGGACCATTGACCTCTATAGA
TCAAGTGACCTGTACCAGCGACAGCCCCGGTCTCCTCGAAAAAACAGGCAGTTCATTGCAGACA
ACTTTTGCATGCGTGGGCTGTCTAACTTTTATCCTGATTTAACGAAACGGATCCGTACTTCCTA
TCAGAGCTTAACAGAGCTGAATGATAGTCCAGTTCCCTTGGAACTTGAGCGGTGCAAGTCTCCC
ACTTCAGACCATGTAAATGGACACTGCACAAGTCCAACCTCTCAGAGTTGCAGTTCTGGAAAAC
GTCTTTCCAGTGCTGATGTTTCAAAAGTAAATCGCTGGGGTCCTGGAAGACCACCATTTAGAAA
GGCACAGTCAGCTGCTTGCATGGAGATATCTTTACCAGTTACAACTGAAGAAACCCGAGAGAAC
TCCTATAACCGCTCCAGGAGCTCTAGCATCTCCAGTATTGACAAGGATTCTAAAGAAGCAATTA
CAGCTTTGTACTTCATGGAATCCTTTGCACGGAAAAATGACTCTACCGTGTCCCCTTGTCTGTT
TGTTGGAACTAGTCTGGGAATGGTAATACTCATCTCCCTAAATCTACCATCATCAGATGAACAA
AGGTTTACAGAGCCGGTGGTGGTATTGCCAAGTGGTACATTCCTCTCACTGAAAGGAGCTGTGC
TAACATTTTCCTGCATGGACAGAACTGGCAATTTAATGCAGCCTCCATATGAGGTATGGAGGGA
TCCCAACAACACAGATGAAAATGAAAAAACCTGGAAAAGGAAATTGGTCATGAACTACTCCTCT
TCATCCCAAGAAATGGGAGACCATCAGTATACGATAATCTGCTCAGAAAAACAAGCCAAAGTCT
TCTCACTGCCGTCCCAGACCTGCCTTTATGTTCACAACATCACAGAGACGTCATTCATATTGCA
AGCAGATGTGGTGGTCATGTGCAACAGTGCCTGCCTGGCCTGCTTTTGTGCGAATGGGCATATC
ATGATAATGAGCTTACCTAGCCTTCGCCCAATGTTGGATGTTAATTATTTGCCACTGACAGACA
TGAGAATAGCACGGACATTTTGTTTTACTAATGAAGGACAGGCATTATACCTTGTCTCCCCAAC
TGAAATTCAACGGTTAACATATAGCCAAGAAATGTGTGATAATATTCAGGACATGTTAGGCGAT
TTGTTTACTCCAATAGAGACACCAGAAGCCCAAAATAGAGGCTTTCTCAAGGGACTGTTTGGTG
GAAGTGGACAGACATTTGACAGAGAAGAACTCTTTGGGGAAGCCTCAGCAGGAAAAGCATCTCG
CAGCCTCGCACAGCACATTCCTGGACCGGGCAGCATAGAAGGGATGAAGGGCGCTGCTGGCGGG
GTGATGGGAGAGCTAACGCGAGCCCGGATTGCACTTGATGAGAGAGGGCAGCGCCTGGGTGAGC
TGGAGGAGAAGACTGCAGGCATGATGACCAGTGCAGAAGCATTTTCCAAGCACGCACACGAGCT
AATGCTGAAATATAAGGACAAGAAATGGTACCAGTTCTAA

hide sequence

RefSeq Acc Id:

XM_063270382 ⟹ XP_063126452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	76,838,839 - 77,167,852 (+)	NCBI

RefSeq Acc Id:

XM_063270383 ⟹ XP_063126453

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	76,839,339 - 77,167,852 (+)	NCBI

RefSeq Acc Id:

XM_063270384 ⟹ XP_063126454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	76,838,839 - 77,167,852 (+)	NCBI

RefSeq Acc Id:

XM_063270385 ⟹ XP_063126455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	76,838,839 - 77,167,852 (+)	NCBI

RefSeq Acc Id:

XM_063270386 ⟹ XP_063126456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	76,838,839 - 77,167,852 (+)	NCBI

RefSeq Acc Id:

XM_063270387 ⟹ XP_063126457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	76,920,186 - 77,167,852 (+)	NCBI

RefSeq Acc Id:

XM_063270388 ⟹ XP_063126458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	77,011,043 - 77,167,852 (+)	NCBI

RefSeq Acc Id:

XM_063270389 ⟹ XP_063126459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	77,036,267 - 77,167,852 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258179	(Get FASTA)	NCBI Sequence Viewer
	NP_001416061	(Get FASTA)	NCBI Sequence Viewer
	XP_063126452	(Get FASTA)	NCBI Sequence Viewer
	XP_063126453	(Get FASTA)	NCBI Sequence Viewer
	XP_063126454	(Get FASTA)	NCBI Sequence Viewer
	XP_063126455	(Get FASTA)	NCBI Sequence Viewer
	XP_063126456	(Get FASTA)	NCBI Sequence Viewer
	XP_063126457	(Get FASTA)	NCBI Sequence Viewer
	XP_063126458	(Get FASTA)	NCBI Sequence Viewer
	XP_063126459	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM11248	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000044583
	ENSRNOP00000044583.7
	ENSRNOP00000099176
	ENSRNOP00000099176.1
	ENSRNOP00000101017.1
	ENSRNOP00000101329
	ENSRNOP00000101329.1
	ENSRNOP00000103535.1

RefSeq Acc Id:

NP_001258179 ⟸ NM_001271250

- UniProtKB:

A6IR95 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKKFNFRKVLDGLTASSPGSGSSSGSNSGGAGSGSVHPGGTAGVLREGIQESLISECFQICKTV
RHGFPYQPTALAFDPVQKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSA
SSDDTLHLWNLRQKRPAILHSLKFNRERITYCHLPFQSKWLYVGTERGNTHIVNIESFILSGYV
IMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSKRAELRVYYDEAIHSID
WHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTVPHGKSQREGRKSESCKPILKVEYKTCRNSEP
FIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVAVLLEKD
LIVVDLTQTNFPIFENPYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPVS
GGAWNLGAQTYPEIIITGHADGTIKFWDASAMTLQMLYKLKTSKVFEKQKVGDGKQTCEIVEED
PFAVQMIYWCPESRIFCVSGVSAYVIIYKFSRHEITAEIVSLEVRLQCDVEDIITPEPETSPPF
PDLSSQLPSSRSLSGSTNTVSSEGVTKDSIPCLSVKTRPVRMPPGYQADLVIQLVWVDGEPPQQ
ITSLAVSSAYGIVAFGNCTGLVVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNRQFIADN
FCMRGLSNFYPDLTKRIRTSYQSLTELNDSPVPLELERCKSPTSDHVNGHCTSPTSQSCSSGKR
LSSADVSKVNRWGPGRPPFRKAQSAACMEISLPVTTEETRENSYNRSRSSSISSIDKDSKEAIT
ALYFMESFARKNDSTVSPCLFVGTSLGMVILISLNLPSSDEQRFTEPVVVLPSGTFLSLKGAVL
TFSCMDRTGNLMQPPYEVWRDPNNTDENEKTWKRKLVMNYSSSSQEMGDHQYTIICSEKQAKVF
SLPSQTCLYVHNITETSFILQADVVVMCNSACLACFCANGHIMIMSLPSLRPMLDVNYLPLTDM
RIARTFCFTNEGQALYLVSPTEIQRLTYSQEMCDNIQDMLGDLFTPIETPEAQNRGFLKGLFGG
SGQTFDREELFGEASAGKASRSLAQHIPGPGSIEGMKGAAGGVMGELTRARIALDERGQRLGEL
EEKTAGMMTSAEAFSKHAHELMLKYKDKKWYQF

hide sequence

Ensembl Acc Id:

ENSRNOP00000044583 ⟸ ENSRNOT00000041715

RefSeq Acc Id:	XP_063126452 ⟸ XM_063270382
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063126455 ⟸ XM_063270385
- Peptide Label:	isoform X3
- UniProtKB:	A6IR95 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126454 ⟸ XM_063270384
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063126456 ⟸ XM_063270386
- Peptide Label:	isoform X4
- UniProtKB:	A6IR95 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126453 ⟸ XM_063270383
- Peptide Label:	isoform X1
- UniProtKB:	A6IR95 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126457 ⟸ XM_063270387
- Peptide Label:	isoform X5
- UniProtKB:	D3ZU84 (UniProtKB/TrEMBL), A6IR95 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126458 ⟸ XM_063270388
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063126459 ⟸ XM_063270389
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000101017 ⟸ ENSRNOT00000131493

Ensembl Acc Id:

ENSRNOP00000101329 ⟸ ENSRNOT00000139253

Ensembl Acc Id:

ENSRNOP00000099176 ⟸ ENSRNOT00000153449

Ensembl Acc Id:

ENSRNOP00000103535 ⟸ ENSRNOT00000161892

Protein Domains

v-SNARE coiled-coil homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZU84-F1-model_v2	AlphaFold	D3ZU84	1-1090	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311561	AgrOrtholog
BioCyc Gene	G2FUF-21252	BioCyc
Ensembl Genes	ENSRNOG00000002496	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000041715	ENTREZGENE
	ENSRNOT00000041715.8	UniProtKB/TrEMBL
	ENSRNOT00000131493.1	UniProtKB/TrEMBL
	ENSRNOT00000139253	ENTREZGENE
	ENSRNOT00000139253.1	UniProtKB/TrEMBL
	ENSRNOT00000153449	ENTREZGENE
	ENSRNOT00000153449.1	UniProtKB/TrEMBL
	ENSRNOT00000161892.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.110	UniProtKB/TrEMBL
	2.130.10.10	UniProtKB/TrEMBL
InterPro	Lethal2_giant	UniProtKB/TrEMBL
	Lgl_C	UniProtKB/TrEMBL
	LLGL2	UniProtKB/TrEMBL
	Quinoprotein_ADH-like_supfam	UniProtKB/TrEMBL
	V_SNARE_CC	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	288080	ENTREZGENE
PANTHER	LETHAL 2 GIANT LARVAE PROTEIN	UniProtKB/TrEMBL
	SYNTAXIN-BINDING PROTEIN 5-LIKE	UniProtKB/TrEMBL
Pfam	Lgl_C	UniProtKB/TrEMBL
	LLGL	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
PhenoGen	Stxbp5l	PhenoGen
PRINTS	LETHAL2GIANT	UniProtKB/TrEMBL
PROSITE	V_SNARE	UniProtKB/TrEMBL
	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002496	RatGTEx
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	Quinoprotein alcohol dehydrogenase-like	UniProtKB/TrEMBL
	SNARE fusion complex	UniProtKB/TrEMBL
	WD40_like	UniProtKB/TrEMBL
UniProt	A0ABK0LAB9_RAT	UniProtKB/TrEMBL
	A0ABK0LEH5_RAT	UniProtKB/TrEMBL
	A0ABK0LL88_RAT	UniProtKB/TrEMBL
	A0ABK0LNJ9_RAT	UniProtKB/TrEMBL
	A6IR95	ENTREZGENE, UniProtKB/TrEMBL
	D3ZU84	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-18	Stxbp5l	syntaxin binding protein 5-like	Stxbp5l_predicted	syntaxin binding protein 5-like (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Stxbp5l_predicted	syntaxin binding protein 5-like (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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