Fam234a (family with sequence similarity 234, member A) - Rat Genome Database

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Gene: Fam234a (family with sequence similarity 234, member A) Rattus norvegicus
Analyze
Symbol: Fam234a
Name: family with sequence similarity 234, member A
RGD ID: 1311484
Description: Predicted to be located in membrane. Predicted to be active in cell surface. Orthologous to human FAM234A (family with sequence similarity 234 member A); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 2,4-dinitrotoluene; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: integrin alpha FG-GAP repeat containing 3; Itfg3; LOC360502; MGC93756; protein ITFG3-like; RGD1311484; similar to hypothetical protein DKFZp761D0211
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,736,741 - 15,768,043 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1015,736,742 - 15,749,835 (-)EnsemblGRCr8
mRatBN7.21015,232,267 - 15,263,529 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,232,278 - 15,263,488 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1019,972,024 - 19,985,078 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,460,903 - 19,473,956 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,960,193 - 14,973,284 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1018,661,030 - 18,674,120 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1019,322,661 - 19,335,752 (-)NCBILyon_Normotensive
Lyon_Hypertensive1021,014,364 - 21,027,454 (-)NCBILyon_Hypertensive
F344_StmMcwi1020,999,807 - 21,012,882 (-)NCBIF344_StmMcwi
Rnor_5.01015,392,901 - 15,424,154 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41015,479,357 - 15,492,467 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1014,900,062 - 14,913,060 (-)NCBICelera
RGSC_v3.11015,480,405 - 15,493,515 (-)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell surface  (IBA,IEA,ISO)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16396499   PMID:19349973   PMID:19581412   PMID:20458337  


Genomics

Comparative Map Data
Fam234a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,736,741 - 15,768,043 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1015,736,742 - 15,749,835 (-)EnsemblGRCr8
mRatBN7.21015,232,267 - 15,263,529 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,232,278 - 15,263,488 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1019,972,024 - 19,985,078 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,460,903 - 19,473,956 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,960,193 - 14,973,284 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1018,661,030 - 18,674,120 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1019,322,661 - 19,335,752 (-)NCBILyon_Normotensive
Lyon_Hypertensive1021,014,364 - 21,027,454 (-)NCBILyon_Hypertensive
F344_StmMcwi1020,999,807 - 21,012,882 (-)NCBIF344_StmMcwi
Rnor_5.01015,392,901 - 15,424,154 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41015,479,357 - 15,492,467 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1014,900,062 - 14,913,060 (-)NCBICelera
RGSC_v3.11015,480,405 - 15,493,515 (-)NCBI
Cytogenetic Map10q12NCBI
FAM234A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816234,821 - 269,963 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16234,521 - 272,183 (+)Ensemblhg38GRCh38
GRCh3716284,820 - 319,962 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616224,833 - 256,120 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3416224,834 - 256,119NCBI
Celera16483,684 - 516,021 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16202,337 - 234,327 (+)NCBIHuRef
CHM1_116284,714 - 316,059 (+)NCBICHM1_1
T2T-CHM13v2.016228,632 - 264,793 (+)NCBIT2T-CHM13v2.0
Fam234a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,431,673 - 26,463,216 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,430,796 - 26,463,216 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381726,212,692 - 26,244,307 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,211,822 - 26,244,242 (-)Ensemblmm10GRCm38
MGSCv371726,349,658 - 26,381,086 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361725,940,313 - 25,971,741 (-)NCBIMGSCv36mm8
Celera1726,746,479 - 26,778,391 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.07NCBI
Fam234a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,912,388 - 16,951,432 (-)Ensembl
ChiLan1.0NW_00495544216,915,630 - 16,950,809 (-)NCBIChiLan1.0ChiLan1.0
FAM234A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218447,597 - 498,732 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,242,422 - 4,275,834 (+)NCBINHGRI_mPanPan1
PanPan1.116224,719 - 259,804 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16238,198 - 259,698 (+)EnsemblpanPan2panpan1.1
FAM234A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,234,853 - 40,271,453 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,234,858 - 40,266,454 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha641,498,574 - 41,534,240 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0640,577,354 - 40,613,648 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,577,359 - 40,616,660 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,265,562 - 40,301,913 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,226,575 - 40,262,904 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,705,110 - 40,741,397 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam234a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,550,999 - 112,581,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501649,017 - 656,930 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936501648,859 - 679,012 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM234A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,410,818 - 41,437,203 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1341,411,786 - 41,437,249 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,996,658 - 41,022,111 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM234A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15198,854 - 211,791 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl5198,575 - 211,845 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606830,967,393 - 31,003,895 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam234a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,086,514 - 1,119,752 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249131,082,352 - 1,123,458 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam234a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v193,473,510 - 3,503,313 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam234a
44 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101576223019737486Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 50 67 138 95 11 49 36 32 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001009701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC096051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC088404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000102828   ⟹   ENSRNOP00000089363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,232,281 - 15,263,488 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120131   ⟹   ENSRNOP00000097833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1015,736,742 - 15,749,835 (-)Ensembl
mRatBN7.2 Ensembl1015,232,278 - 15,263,467 (-)Ensembl
RefSeq Acc Id: NM_001009701   ⟹   NP_001009701
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,741 - 15,749,835 (-)NCBI
mRatBN7.21015,232,267 - 15,245,362 (-)NCBI
Dahl_SR_JrHsd1018,661,030 - 18,674,120 (-)NCBI
Lyon_Normotensive1019,322,661 - 19,335,752 (-)NCBI
Lyon_Hypertensive1021,014,364 - 21,027,454 (-)NCBI
F344_StmMcwi1020,999,807 - 21,012,882 (-)NCBI
Rnor_5.01015,392,901 - 15,424,154 (-)NCBI
RGSC_v3.41015,479,357 - 15,492,467 (-)RGD
Celera1014,900,062 - 14,913,060 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086281   ⟹   XP_038942209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,768,043 (-)NCBI
mRatBN7.21015,232,267 - 15,263,493 (-)NCBI
RefSeq Acc Id: XM_039086282   ⟹   XP_038942210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,993 (-)NCBI
mRatBN7.21015,232,267 - 15,263,493 (-)NCBI
RefSeq Acc Id: XM_039086283   ⟹   XP_038942211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,964 (-)NCBI
mRatBN7.21015,232,267 - 15,262,891 (-)NCBI
RefSeq Acc Id: XM_039086284   ⟹   XP_038942212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,993 (-)NCBI
mRatBN7.21015,232,267 - 15,263,529 (-)NCBI
RefSeq Acc Id: XM_039086285   ⟹   XP_038942213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,964 (-)NCBI
mRatBN7.21015,232,267 - 15,263,493 (-)NCBI
RefSeq Acc Id: XM_039086286   ⟹   XP_038942214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,748,265 (-)NCBI
mRatBN7.21015,232,267 - 15,243,811 (-)NCBI
RefSeq Acc Id: XM_039086287   ⟹   XP_038942215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,977 (-)NCBI
mRatBN7.21015,232,267 - 15,263,494 (-)NCBI
RefSeq Acc Id: XM_063269316   ⟹   XP_063125386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,964 (-)NCBI
RefSeq Acc Id: XM_063269317   ⟹   XP_063125387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,964 (-)NCBI
RefSeq Acc Id: XM_063269318   ⟹   XP_063125388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,964 (-)NCBI
RefSeq Acc Id: XM_063269319   ⟹   XP_063125389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,986 (-)NCBI
RefSeq Acc Id: XM_063269320   ⟹   XP_063125390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,993 (-)NCBI
RefSeq Acc Id: XM_063269321   ⟹   XP_063125391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,736,752 - 15,767,965 (-)NCBI
RefSeq Acc Id: NP_001009701   ⟸   NM_001009701
- UniProtKB: Q5M7W6 (UniProtKB/Swiss-Prot),   A0A8I6AKT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038942212   ⟸   XM_039086284
- Peptide Label: isoform X1
- UniProtKB: Q5M7W6 (UniProtKB/Swiss-Prot),   A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942215   ⟸   XM_039086287
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942213   ⟸   XM_039086285
- Peptide Label: isoform X1
- UniProtKB: Q5M7W6 (UniProtKB/Swiss-Prot),   A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942209   ⟸   XM_039086281
- Peptide Label: isoform X1
- UniProtKB: Q5M7W6 (UniProtKB/Swiss-Prot),   A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942210   ⟸   XM_039086282
- Peptide Label: isoform X1
- UniProtKB: Q5M7W6 (UniProtKB/Swiss-Prot),   A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942211   ⟸   XM_039086283
- Peptide Label: isoform X1
- UniProtKB: Q5M7W6 (UniProtKB/Swiss-Prot),   A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942214   ⟸   XM_039086286
- Peptide Label: isoform X1
- UniProtKB: Q5M7W6 (UniProtKB/Swiss-Prot),   A0A8I6AKT6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089363   ⟸   ENSRNOT00000102828
Ensembl Acc Id: ENSRNOP00000097833   ⟸   ENSRNOT00000120131
RefSeq Acc Id: XP_063125390   ⟸   XM_063269320
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125389   ⟸   XM_063269319
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125391   ⟸   XM_063269321
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125387   ⟸   XM_063269317
- Peptide Label: isoform X1
- UniProtKB: Q5M7W6 (UniProtKB/Swiss-Prot),   A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125388   ⟸   XM_063269318
- Peptide Label: isoform X1
- UniProtKB: Q5M7W6 (UniProtKB/Swiss-Prot),   A0A8I6AKT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125386   ⟸   XM_063269316
- Peptide Label: isoform X1
- UniProtKB: Q5M7W6 (UniProtKB/Swiss-Prot),   A0A8I6AKT6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M7W6-F1-model_v2 AlphaFold Q5M7W6 1-552 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311484 AgrOrtholog
BioCyc Gene G2FUF-25721 BioCyc
Ensembl Genes ENSRNOG00000067554 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000120131 ENTREZGENE
  ENSRNOT00000120131.1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7108395 IMAGE-MGC_LOAD
InterPro FAM234 UniProtKB/Swiss-Prot
  FAM234A_B_beta-prop UniProtKB/Swiss-Prot
  Quinoprotein_ADH-like_supfam UniProtKB/Swiss-Prot
KEGG Report rno:360502 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93756 IMAGE-MGC_LOAD
NCBI Gene 360502 ENTREZGENE
PANTHER PROTEIN FAM234A UniProtKB/Swiss-Prot
  PTHR21419 UniProtKB/Swiss-Prot
Pfam Beta-prop_FAM234A_B UniProtKB/Swiss-Prot
PhenoGen Fam234a PhenoGen
RatGTEx ENSRNOG00000067554 RatGTEx
Superfamily-SCOP SSF50998 UniProtKB/Swiss-Prot
UniProt A0A8I6AKT6 ENTREZGENE
  F234A_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-27 Fam234a  family with sequence similarity 234, member A  Itfg3  integrin alpha FG-GAP repeat containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Itfg3  integrin alpha FG-GAP repeat containing 3  LOC100365269  protein ITFG3-like  Data merged from RGD:2319405 1643240 APPROVED
2010-05-05 LOC100365269  protein ITFG3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-07-28 Itfg3  integrin alpha FG-GAP repeat containing 3  RGD1311484  similar to hypothetical protein DKFZp761D0211  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311484  similar to hypothetical protein DKFZp761D0211  RGD1311484_predicted  similar to hypothetical protein DKFZp761D0211 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311484_predicted  similar to hypothetical protein DKFZp761D0211 (predicted)  LOC360502_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360502_predicted  similar to hypothetical protein DKFZp761D0211 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL