Slc19a3 (solute carrier family 19 member 3) - Rat Genome Database

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Gene: Slc19a3 (solute carrier family 19 member 3) Rattus norvegicus
Analyze
Symbol: Slc19a3
Name: solute carrier family 19 member 3
RGD ID: 1311413
Description: Predicted to enable thiamine transmembrane transporter activity. Predicted to be involved in pyridoxine transport; thiamine diphosphate biosynthetic process; and thiamine transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Biomarker of chronic kidney disease. Human ortholog(s) of this gene implicated in biotin-responsive basal ganglia disease. Orthologous to human SLC19A3 (solute carrier family 19 member 3); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; lead diacetate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC316559; solute carrier family 19 (sodium/hydrogen exchanger), member 3; solute carrier family 19 (thiamine transporter), member 3; solute carrier family 19, member 3; thiamine transporter 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8991,723,799 - 91,747,499 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl991,724,718 - 91,754,991 (-)EnsemblGRCr8
mRatBN7.2984,275,722 - 84,299,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl984,277,024 - 84,299,337 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx992,707,216 - 92,729,248 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0997,835,678 - 97,857,714 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0996,218,535 - 96,240,515 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0988,762,775 - 88,828,553 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl988,764,073 - 88,816,898 (-)Ensemblrn6Rnor6.0
Rnor_5.0988,510,631 - 88,572,788 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4982,323,669 - 82,346,559 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera981,719,462 - 81,741,701 (-)NCBICelera
RGSC_v3.1982,507,109 - 82,532,580 (-)NCBI
Cytogenetic Map9q35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Effect of chronic kidney disease on the expression of thiamin and folic acid transporters. Bukhari FJ, etal., Nephrol Dial Transplant. 2011 Jul;26(7):2137-44. doi: 10.1093/ndt/gfq675. Epub 2010 Dec 13.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19879271   PMID:35512554  


Genomics

Comparative Map Data
Slc19a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8991,723,799 - 91,747,499 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl991,724,718 - 91,754,991 (-)EnsemblGRCr8
mRatBN7.2984,275,722 - 84,299,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl984,277,024 - 84,299,337 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx992,707,216 - 92,729,248 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0997,835,678 - 97,857,714 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0996,218,535 - 96,240,515 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0988,762,775 - 88,828,553 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl988,764,073 - 88,816,898 (-)Ensemblrn6Rnor6.0
Rnor_5.0988,510,631 - 88,572,788 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4982,323,669 - 82,346,559 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera981,719,462 - 81,741,701 (-)NCBICelera
RGSC_v3.1982,507,109 - 82,532,580 (-)NCBI
Cytogenetic Map9q35NCBI
SLC19A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382227,683,763 - 227,718,028 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2227,683,763 - 227,718,088 (-)Ensemblhg38GRCh38
GRCh372228,548,479 - 228,582,744 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,258,170 - 228,290,989 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342228,375,430 - 228,408,231NCBI
Celera2222,319,407 - 222,352,201 (-)NCBICelera
Cytogenetic Map2q36.3NCBI
HuRef2220,392,670 - 220,425,503 (-)NCBIHuRef
CHM1_12228,556,170 - 228,588,989 (-)NCBICHM1_1
T2T-CHM13v2.02228,166,399 - 228,200,658 (-)NCBIT2T-CHM13v2.0
Slc19a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39182,990,242 - 83,016,541 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl182,990,244 - 83,016,169 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38183,012,523 - 83,038,820 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl183,012,523 - 83,038,448 (-)Ensemblmm10GRCm38
MGSCv37183,009,098 - 83,035,023 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36182,892,821 - 82,917,472 (-)NCBIMGSCv36mm8
Celera183,077,119 - 83,103,116 (-)NCBICelera
Cytogenetic Map1C5NCBI
cM Map142.65NCBI
Slc19a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554536,935,371 - 6,958,103 (+)Ensembl
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBIChiLan1.0ChiLan1.0
SLC19A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213130,298,237 - 130,333,141 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B130,313,207 - 130,348,111 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B114,925,990 - 114,957,841 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B233,736,721 - 233,767,935 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B233,736,050 - 233,764,514 (-)EnsemblpanPan2panpan1.1
LOC486151
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12540,411,489 - 40,442,183 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2540,412,427 - 40,438,042 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2541,028,950 - 41,066,567 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02540,657,948 - 40,695,609 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2540,657,948 - 40,675,743 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12540,594,535 - 40,632,168 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02540,436,167 - 40,473,798 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02540,609,381 - 40,647,026 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101963615
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303182,599,704 - 182,624,242 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365258,322,602 - 8,340,082 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365258,323,550 - 8,339,686 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC19A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15129,071,582 - 129,096,282 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115129,071,563 - 129,096,338 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215142,948,609 - 142,973,510 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC19A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110113,720,754 - 113,749,426 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10113,719,312 - 113,737,395 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604085,710,255 - 85,734,086 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc19a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248431,900,240 - 1,916,610 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc19a3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14155,845,306 - 155,857,618 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc19a3
63 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:23
Count of miRNA genes:23
Interacting mature miRNAs:23
Transcripts:ENSRNOT00000021373
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)98672213292642305Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)99062451792642305Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 5 46 145 61 65 45 9 45 6 216 72 7 130 80 86 20 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000083667   ⟹   ENSRNOP00000071722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl991,725,099 - 91,754,991 (-)Ensembl
mRatBN7.2 Ensembl984,277,024 - 84,299,337 (-)Ensembl
Rnor_6.0 Ensembl988,764,073 - 88,816,898 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137264   ⟹   ENSRNOP00000101856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl991,724,718 - 91,747,279 (-)Ensembl
RefSeq Acc Id: NM_001108228   ⟹   NP_001101698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8991,725,099 - 91,747,129 (-)NCBI
mRatBN7.2984,277,024 - 84,299,016 (-)NCBI
Rnor_6.0988,764,073 - 88,828,412 (-)NCBI
Rnor_5.0988,510,631 - 88,572,788 (-)NCBI
RGSC_v3.4982,323,669 - 82,346,559 (-)RGD
Celera981,719,462 - 81,741,701 (-)RGD
Sequence:
RefSeq Acc Id: XM_039083686   ⟹   XP_038939614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8991,723,799 - 91,747,497 (-)NCBI
mRatBN7.2984,275,722 - 84,299,368 (-)NCBI
RefSeq Acc Id: XM_039083687   ⟹   XP_038939615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8991,723,799 - 91,747,497 (-)NCBI
mRatBN7.2984,275,722 - 84,299,368 (-)NCBI
RefSeq Acc Id: XM_039083688   ⟹   XP_038939616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8991,723,799 - 91,747,499 (-)NCBI
mRatBN7.2984,275,722 - 84,299,368 (-)NCBI
RefSeq Acc Id: NP_001101698   ⟸   NM_001108228
- Sequence:
Ensembl Acc Id: ENSRNOP00000071722   ⟸   ENSRNOT00000083667
RefSeq Acc Id: XP_038939616   ⟸   XM_039083688
- Peptide Label: isoform X2
- UniProtKB: A6JWB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939614   ⟸   XM_039083686
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K171 (UniProtKB/TrEMBL),   A6JWB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939615   ⟸   XM_039083687
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K171 (UniProtKB/TrEMBL),   A6JWB5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101856   ⟸   ENSRNOT00000137264

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K171-F1-model_v2 AlphaFold A0A0G2K171 1-481 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311413 AgrOrtholog
BioCyc Gene G2FUF-26967 BioCyc
Ensembl Genes ENSRNOG00000057256 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083667 ENTREZGENE
  ENSRNOT00000083667.3 UniProtKB/TrEMBL
  ENSRNOT00000137264.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro Folate_carrier UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report rno:316559 UniProtKB/TrEMBL
NCBI Gene 316559 ENTREZGENE
PANTHER Folate_carrier UniProtKB/TrEMBL
  THIAMINE TRANSPORTER 2 UniProtKB/TrEMBL
Pfam Folate_carrier UniProtKB/TrEMBL
PhenoGen Slc19a3 PhenoGen
PIRSF Folate_carrier UniProtKB/TrEMBL
RatGTEx ENSRNOG00000057256 RatGTEx
Superfamily-SCOP MFS_gen_substrate_transporter UniProtKB/TrEMBL
UniProt A0A0G2K171 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L0X6_RAT UniProtKB/TrEMBL
  A6JWB5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Slc19a3  solute carrier family 19 member 3  Slc19a3  solute carrier family 19 (thiamine transporter), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc19a3  solute carrier family 19 (thiamine transporter), member 3  Slc19a3  solute carrier family 19, member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-19 Slc19a3  solute carrier family 19, member 3  Slc19a3  solute carrier family 19 (sodium/hydrogen exchanger), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Slc19a3  solute carrier family 19 (sodium/hydrogen exchanger), member 3  Slc19a3_predicted  solute carrier family 19, member 3 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Slc19a3_predicted  solute carrier family 19, member 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED