Psx1 (placenta specific homeobox 1) - Rat Genome Database

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Gene: Psx1 (placenta specific homeobox 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Psx1
Name: placenta specific homeobox 1
RGD ID: 1311402
Description: INTERACTS WITH C60 fullerene; indole-3-methanol
Type: pseudo (Ensembl: pseudogene)
RefSeq Status: INFERRED
Previously known as: homeobox protein Rhox5; LOC296535
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8326,655,193 - 26,656,038 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.236,251,362 - 6,252,207 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl36,251,495 - 6,252,166 (-)EnsemblmRatBN7.2
Rnor_6.03573,921 - 574,592 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3574,092 - 574,592 (-)Ensemblrn6Rnor6.0
Rnor_5.03564,646 - 565,317 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.431,692,796 - 1,693,467 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera31,089,056 - 1,089,727 (-)NCBICelera
RGSC_v3.131,692,795 - 1,693,467 (-)NCBI
Cytogenetic Map3p13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:27
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000066033
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
AV213605  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.236,251,477 - 6,251,590 (+)MAPPERmRatBN7.2
Rnor_6.03573,904 - 574,016NCBIRnor6.0
Rnor_5.03564,629 - 564,741UniSTSRnor5.0
RGSC_v3.431,692,779 - 1,692,891UniSTSRGSC3.4
Celera31,089,039 - 1,089,151UniSTS
Cytogenetic Map3p13UniSTS


Expression

RNA-SEQ Expression

ectoderm
nervous system
1 1

Sequence


Ensembl Acc Id: ENSRNOT00000066033   ⟹   ENSRNOP00000061561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl36,251,495 - 6,252,166 (-)Ensembl
Rnor_6.0 Ensembl3574,092 - 574,592 (-)Ensembl
RefSeq Acc Id: XM_231064   ⟹   XP_231064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.236,251,495 - 6,252,166 (-)NCBI
Rnor_6.03573,921 - 574,592 (-)NCBI
Rnor_5.03564,646 - 565,317 (-)NCBI
RGSC_v3.431,692,796 - 1,693,467 (-)RGD
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A0L0-F1-model_v2 AlphaFold D4A0L0 1-166 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311402 AgrOrtholog
BioCyc Gene G2FUF-50530 BioCyc
Ensembl Genes ENSRNOG00000043179 Ensembl
NCBI Gene 296535 ENTREZGENE
PhenoGen Psx1 PhenoGen
RatGTEx ENSRNOG00000043179 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Psx1  placenta specific homeobox 1   Psx1_predicted  placenta specific homeobox 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Psx1_predicted  placenta specific homeobox 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED