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Gene: Kirrel3 (kirre like nephrin family adhesion molecule 3) Rattus norvegicus

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Symbol:

Kirrel3

Name:

kirre like nephrin family adhesion molecule 3

RGD ID:

1311382

Description:

Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in hemopoiesis; homophilic cell adhesion via plasma membrane adhesion molecules; and nervous system development. Predicted to act upstream of or within glomerulus morphogenesis; inter-male aggressive behavior; and nervous system development. Predicted to be located in several cellular components, including axon; dendritic shaft; and synaptic vesicle. Predicted to be active in cell-cell junction and plasma membrane. Orthologous to human KIRREL3 (kirre like nephrin family adhesion molecule 3); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

kin of IRRE like 3; kin of IRRE like 3 (Drosophila); kin of IRRE-like protein 3; LOC315546

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KIRREL3 (kirre like nephrin family adhesion molecule 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Kirrel3 (kirre like nephrin family adhesion molecule 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kirrel3 (kirre like nephrin family adhesion molecule 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KIRREL3 (kirre like nephrin family adhesion molecule 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KIRREL3 (kirre like nephrin family adhesion molecule 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kirrel3 (kirre like nephrin family adhesion molecule 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KIRREL3 (kirre like nephrin family adhesion molecule 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KIRREL3 (kirre like nephrin family adhesion molecule 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kirrel3 (kirre like nephrin family adhesion molecule 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Kirrel3 (kirre like nephrin family adhesion molecule 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TRIM28 (tripartite motif containing 28)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	KIRREL3 (kirre like nephrin family adhesion molecule 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Kirrel3 (kirre like nephrin family adhesion molecule 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kirrel3b (kirre like nephrin family adhesion molecule 3b)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	kirrel3b (kirre like nephrin family adhesion molecule 3b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kirrel3a (kirre like nephrin family adhesion molecule 3a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	kirre	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	kirre	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	rst	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	rst	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	syg-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Caenorhabditis elegans (roundworm):	syg-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	kirrel3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	41,123,692 - 41,663,528 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	41,123,878 - 41,664,147 (+)	Ensembl				GRCr8
mRatBN7.2	8	32,865,779 - 33,407,555 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	32,862,776 - 33,405,676 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	36,938,412 - 37,478,071 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	35,221,433 - 35,761,111 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	33,084,303 - 33,623,950 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	35,692,525 - 36,254,755 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	36,125,999 - 36,254,753 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	35,722,596 - 36,273,792 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	34,300,350 - 34,835,957 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	34,284,951 - 34,824,973 (+)	NCBI		Celera
RGSC_v3.1	8	34,425,084 - 34,844,541 (+)	NCBI
Cytogenetic Map	8	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autosomal dominant intellectual developmental disorder 4 (ISO)

Developmental Disabilities (ISO)

Developmental Disease (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-palmitoylglycerol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

casticin (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cocaine (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

folic acid (ISO)

indometacin (ISO)

lead diacetate (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

monosodium L-glutamate (ISO)

nickel sulfate (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

potassium bromate (EXP)

propanal (ISO)

rifampicin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

testosterone (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-cell adhesion (IBA)

glomerulus morphogenesis (ISO)

hemopoiesis (IEA,ISO)

hippocampus development (IEA,ISO)

homophilic cell-cell adhesion (IEA,ISO)

inter-male aggressive behavior (ISO)

neuron migration (ISO)

neuron projection morphogenesis (ISO)

principal sensory nucleus of trigeminal nerve development (ISO)

synapse assembly (IBA,IEA,ISO)

Cellular Component

axon (IEA,ISO)

cell-cell junction (IBA)

dendrite (IEA,ISO)

dendritic shaft (IEA,ISO)

extracellular region (IEA,ISO)

membrane (IEA,ISO)

plasma membrane (IBA,IEA,ISO)

synaptic vesicle (IEA,ISO)

Molecular Function

cell adhesion molecule binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12665856	PMID:16874800	PMID:21241806	PMID:23637329	PMID:25902260	PMID:26575286

Genomics

Comparative Map Data

Kirrel3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	41,123,692 - 41,663,528 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	41,123,878 - 41,664,147 (+)	Ensembl				GRCr8
mRatBN7.2	8	32,865,779 - 33,407,555 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	32,862,776 - 33,405,676 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	36,938,412 - 37,478,071 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	35,221,433 - 35,761,111 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	33,084,303 - 33,623,950 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	35,692,525 - 36,254,755 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	36,125,999 - 36,254,753 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	35,722,596 - 36,273,792 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	34,300,350 - 34,835,957 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	34,284,951 - 34,824,973 (+)	NCBI		Celera
RGSC_v3.1	8	34,425,084 - 34,844,541 (+)	NCBI
Cytogenetic Map	8	q21	NCBI

KIRREL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	126,423,358 - 127,003,394 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	126,423,358 - 127,003,460 (-)	Ensembl			hg38	GRCh38
GRCh37	11	126,293,253 - 126,870,766 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	125,799,613 - 126,375,701 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	125,799,684 - 126,375,615	NCBI
Celera	11	123,459,514 - 124,037,646 (-)	NCBI		Celera
Cytogenetic Map	11	q24.2	NCBI
HuRef	11	122,817,366 - 122,817,789 (-)	NCBI		HuRef
HuRef	11	122,238,286 - 122,410,924 (-)	NCBI		HuRef
CHM1_1	11	126,179,676 - 126,756,915 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	126,454,803 - 127,036,590 (-)	NCBI		T2T-CHM13v2.0

Kirrel3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	34,396,850 - 34,952,103 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	34,397,190 - 34,948,012 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	34,485,853 - 35,040,807 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	34,485,894 - 35,036,716 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	34,296,316 - 34,843,889 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	34,238,296 - 34,785,975 (+)	NCBI		MGSCv36	mm8
Celera	9	31,740,583 - 32,293,826 (+)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	18.97	NCBI

Kirrel3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	27,428,360 - 27,991,321 (-)	Ensembl
ChiLan1.0	NW_004955412	27,428,360 - 27,994,458 (-)	NCBI	ChiLan1.0	ChiLan1.0

KIRREL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	127,105,851 - 127,690,728 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	128,213,408 - 128,798,315 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	121,236,962 - 121,821,806 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	125,146,563 - 125,726,452 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	125,146,563 - 125,723,504 (-)	Ensembl			panPan2	panpan1.1

KIRREL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	7,583,530 - 8,124,045 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	7,583,805 - 8,123,080 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	7,645,744 - 8,184,370 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	7,538,980 - 8,078,718 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	7,539,227 - 8,078,660 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	7,996,350 - 8,148,415 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	7,583,374 - 8,122,445 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	7,616,414 - 8,156,314 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Kirrel3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	108,652,952 - 108,687,285 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936572	5,239,573 - 5,796,368 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936572	5,763,098 - 5,797,410 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIRREL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	53,491,991 - 53,664,072 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	53,493,735 - 54,066,490 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	59,332,982 - 59,498,767 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KIRREL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	117,553,388 - 118,122,895 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	117,551,940 - 117,687,637 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	7,949,043 - 8,520,592 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kirrel3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624812	562,308 - 1,154,934 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624812	561,290 - 1,158,012 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Kirrel3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	30,059,478 - 30,602,308 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Kirrel3
5090 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	463
Count of miRNA genes:	235
Interacting mature miRNAs:	290
Transcripts:	ENSRNOT00000013036
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39752803	84752803	Rat
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	39106258	91341052	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	39106258	91341052	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	39106258	84106258	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
61337	Bp22	Blood pressure QTL 22	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	51589833	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	39106258	91341052	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	37760859	58991895	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	37760859	61459705	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	35464071	71842899	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	39106258	84106258	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	84106258	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	67378345	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	39106258	91341052	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	34125902	55607752	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
70206	Alc20	Alcohol consumption QTL 20	2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	8	39106258	49610361	Rat

Markers in Region

D8Rat100

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	33,343,218 - 33,343,426 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	36,181,831 - 36,182,038	NCBI	Rnor6.0
Rnor_5.0	8	36,203,861 - 36,204,068	UniSTS	Rnor5.0
RGSC_v3.4	8	34,773,456 - 34,773,664	RGD	RGSC3.4
RGSC_v3.4	8	34,773,457 - 34,773,664	UniSTS	RGSC3.4
Celera	8	34,761,230 - 34,761,437	UniSTS
RGSC_v3.1	8	34,782,222 - 34,782,430	RGD
FHH x ACI Map	8	26.99	RGD
FHH x ACI Map	8	26.99	UniSTS
Cytogenetic Map	8	q21	UniSTS

D3Mco55

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	41,419,558 - 41,419,722 (+)	Marker Load Pipeline
mRatBN7.2	8	33,161,693 - 33,161,853 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	35,996,819 - 35,996,978	NCBI	Rnor6.0
Rnor_5.0	8	36,023,372 - 36,023,531	UniSTS	Rnor5.0
RGSC_v3.4	8	34,589,399 - 34,589,558	UniSTS	RGSC3.4
RGSC_v3.4	3	168,596,925 - 168,597,084	UniSTS	RGSC3.4
Celera	8	34,580,747 - 34,580,906	UniSTS
Cytogenetic Map	8	q21	UniSTS

D8Got342

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	32,880,533 - 32,880,641 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	35,707,396 - 35,707,503	NCBI	Rnor6.0
Rnor_5.0	8	35,737,551 - 35,737,658	UniSTS	Rnor5.0
RGSC_v3.4	8	34,315,019 - 34,315,126	UniSTS	RGSC3.4
Celera	8	34,299,654 - 34,299,761	UniSTS
Cytogenetic Map	8	q21	UniSTS

BF386659

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	33,400,488 - 33,400,638 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	36,249,564 - 36,249,713	NCBI	Rnor6.0
Rnor_5.0	8	36,268,601 - 36,268,750	UniSTS	Rnor5.0
RGSC_v3.4	8	34,830,766 - 34,830,915	UniSTS	RGSC3.4
Celera	8	34,819,782 - 34,819,931	UniSTS
RH 3.4 Map	8	286.2	UniSTS
Cytogenetic Map	8	q21	UniSTS

BF394891

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	32,894,130 - 32,894,332 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	35,721,222 - 35,721,423	NCBI	Rnor6.0
Rnor_5.0	8	35,751,377 - 35,751,578	UniSTS	Rnor5.0
RGSC_v3.4	8	34,329,087 - 34,329,288	UniSTS	RGSC3.4
Celera	8	34,313,575 - 34,313,776	UniSTS
RH 3.4 Map	8	283.8	UniSTS
Cytogenetic Map	8	q21	UniSTS

BF400294

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	32,993,617 - 32,993,805 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	35,826,848 - 35,827,035	NCBI	Rnor6.0
Rnor_5.0	8	35,855,280 - 35,855,467	UniSTS	Rnor5.0
RGSC_v3.4	8	34,419,393 - 34,419,580	UniSTS	RGSC3.4
Celera	8	34,413,267 - 34,413,454	UniSTS
RH 3.4 Map	8	284.7	UniSTS
Cytogenetic Map	8	q21	UniSTS

BF399480

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	33,164,860 - 33,165,015 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	35,999,983 - 36,000,137	NCBI	Rnor6.0
Rnor_5.0	8	36,026,536 - 36,026,690	UniSTS	Rnor5.0
RGSC_v3.4	8	34,592,566 - 34,592,720	UniSTS	RGSC3.4
Celera	8	34,583,896 - 34,584,050	UniSTS
RH 3.4 Map	8	285.5	UniSTS
Cytogenetic Map	8	q21	UniSTS

AU047192

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	33,346,612 - 33,346,771 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	36,185,225 - 36,185,383	NCBI	Rnor6.0
Rnor_5.0	8	36,207,255 - 36,207,413	UniSTS	Rnor5.0
RGSC_v3.4	8	34,776,851 - 34,777,009	UniSTS	RGSC3.4
Celera	8	34,764,624 - 34,764,782	UniSTS
Cytogenetic Map	8	q21	UniSTS

RH138076

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	33,123,938 - 33,124,083 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	35,958,153 - 35,958,297	NCBI	Rnor6.0
Rnor_5.0	8	35,986,322 - 35,986,466	UniSTS	Rnor5.0
RGSC_v3.4	8	34,549,693 - 34,549,837	UniSTS	RGSC3.4
Celera	8	34,543,076 - 34,543,220	UniSTS
RH 3.4 Map	8	285.6	UniSTS
Cytogenetic Map	8	q21	UniSTS

RH139479

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	33,405,283 - 33,405,464 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	36,254,359 - 36,254,539	NCBI	Rnor6.0
Rnor_5.0	8	36,273,396 - 36,273,576	UniSTS	Rnor5.0
RGSC_v3.4	8	34,835,561 - 34,835,741	UniSTS	RGSC3.4
Celera	8	34,824,577 - 34,824,757	UniSTS
RH 3.4 Map	8	288.6	UniSTS
Cytogenetic Map	8	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	10	78	175	65	64	33	81	33	6	339	200	21	145	83	97	31	22	22

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001048215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ902828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013036 ⟹ ENSRNOP00000013036

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	41,124,077 - 41,663,522 (+)	Ensembl
mRatBN7.2 Ensembl	8	32,866,169 - 33,405,676 (+)	Ensembl
Rnor_6.0 Ensembl	8	36,125,999 - 36,254,753 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088046 ⟹ ENSRNOP00000073469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	41,123,878 - 41,663,522 (+)	Ensembl
mRatBN7.2 Ensembl	8	32,862,776 - 33,405,676 (+)	Ensembl
Rnor_6.0 Ensembl	8	36,126,081 - 36,253,721 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103546 ⟹ ENSRNOP00000080508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	41,123,878 - 41,663,522 (+)	Ensembl
mRatBN7.2 Ensembl	8	32,862,776 - 33,405,676 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000152782 ⟹ ENSRNOP00000103821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	41,123,878 - 41,664,147 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000154206 ⟹ ENSRNOP00000105467

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	41,261,201 - 41,663,522 (+)	Ensembl

RefSeq Acc Id:

NM_001048215 ⟹ NP_001041680

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	41,123,773 - 41,663,524 (+)	NCBI
mRatBN7.2	8	32,865,865 - 33,405,680 (+)	NCBI
Rnor_6.0	8	35,692,525 - 36,254,755 (+)	NCBI
Rnor_5.0	8	35,722,596 - 36,273,792 (+)	NCBI
RGSC_v3.4	8	34,300,350 - 34,835,957 (+)	RGD
Celera	8	34,284,951 - 34,824,973 (+)	RGD

Sequence:

show sequence

AGCCGTGTGCCTGGGATACTAAGAGCCAGAGAATGGATCTGCTCCGAGTGGGGACATTGCTGAG
GATCCCGGCTTCCCGAGGTGGCTGAAAACAAGCATTTGGTTTCGGCTGCCTGCAGATACCTGGA
GTCACAGCGAGACCTAAGCGGACCGGAGGAGGGACAGACCGACTGACAGATAGATGGTCGGCGC
GAACCCAGGAGGACCGGCGGCGGAGGCTGAGCACCGCGAGCCCAGCCGCCGCTCTTGAAGAGAA
ACTAACTGCTCGCCCAAGTTGCCCCGCCGGCTGCCCGCGCGCTGAGGAATGAGACCTTTCCAGC
TGGATTTGCTCTTCCTCTGCTTCTTCCTTTTCAGTCAAGAGCTTGGCCTCCAGAGGAGAGGATG
CTGTCTGGTGCTGGGCTACATGGCCAAGGACAAGTTTCGGAGAATGAATGAAGGTCAAGTCTAC
TCCTTCAGCCAGCAACCCCAGGACCAAGTGGTGGTGTCAGGACAACCAGTGACTCTGCTGTGTG
CCATCCCTGAATATGATGGCTTCGTCCTGTGGATCAAAGATGGCTTGGCTCTAGGTGTAGGCAG
AGACCTCTCAAGCTACCCCCAGTACCTGGTGGTGGGGAACCACCTCTCAGGAGAGCATCACCTG
AAGATCCTGAGGGCTGAGCTGCAGGACGATGCTGTGTACGAGTGCCAGGCCATCCAGGCTGCCA
TCCGGTCCCGCCCTGCACGCCTTACAGTCCTGGTGCCACCAGATGACCCCATCATCCTAGGGGG
GCCTGTGATCAGCCTTCGGGCAGGGGATCCCCTCAACCTCACCTGCCATGCAGACAATGCCAAG
CCTGCAGCTTCCATCATCTGGCTACGCAAAGGAGAGGTCATCAATGGGGCCACCTACTCCAAGA
CCCTGCTTCGAGATGGCAAGCGTGAGAGCATCGTCAGCACACTCTTCATCTCCCCAGGGGACGT
AGAAAATGGGCAGAGCATTGTGTGCCGAGCCACCAACAAAGCCATCCCCGGAGGAAAGGAGACC
TCAGTCACCATAGACATCCAGCATCCACCACTTGTCAACTTGTCCGTAGAACCACAGCCGGTAT
TGGAGGACAATATCGTCACGTTCCACTGCTCTGCAAAGGCCAACCCAGCTGTCACCCAGTACAG
GTGGGCCAAACGGGGTCACATCATCAAGGAGGCATCTGGGGAGCTGTATAGGACCACCGTGGAC
TACACATACTTCTCAGAGCCTGTATCCTGCGAAGTGACCAATGCCTTGGGCAGCACCAACCTCA
GCCGCACAGTGGACGTGTACTTTGGCCCTCGAATGACCTCGGAGCCTCAGTCCCTGCTGGTAGA
TCTGGGCTCAGATGCTGTCTTCAGCTGTGCGTGGATCGGCAACCCATCTCTGACCATCGTGTGG
ATGAAACGAGGTTCTGGTGTGGTCCTGAGCAATGAAAAGACCCTAACCCTCAAATCTGTCCGCC
AAGAGGATGCCGGGAAGTACGTGTGCCGGGCTGTGGTGCCCCGGGTAGGAGCTGGGGAGAGAGA
GGTGACCTTGACTGTCAATGGACCCCCCATCATCTCCAGCACACAGACCCAGCATGCCCTCCAT
GGAGAGAAGGGCCAGATCAAATGCTTCATCCGGAGCACACCACCGCCTGACCGAATTGCCTGGT
CCTGGAAGGAGAATGTGCTGGAGTCGGGGACATCAGGGCGCTACACAGTGGAGACGGTGAACAC
CGAGGAGGGCGTCATCTCCACGCTGACCATTAGCAACATTGTGCGTGCTGACTTCCAGACCATA
TACAACTGTACAGCCTGGAACAGCTTCGGCTCTGACACAGAGATCATCCGACTCAAGGAACAAG
AGTCAGTGCCAATGGCCGTCATCATCGGGGTGGCCGTAGGAGCTGGCGTGGCCTTCCTCGTCCT
AATGGCAACCATTGTGGCCTTCTGCTGTGCCCGTTCCCAGAGAAATCTCAAAGGTGTTGTGTCA
GCCAAAAATGATATTCGAGTGGAGATTGTACACAAGGAGCCAGCTTCTGGTCGGGAGGCTGAGG
ACCACACCACCATCAAGCAGCTGATGATGGACCGGGGTGAATTCCAACAAGACTCCGTGCTGAA
GCAGCTGGAGGTCCTCAAAGAAGAGGAGAAGGAGTTTCAGAACCTGAAGGACCCCACCAACGGC
TACTACAGCGTCAACACCTTCAAAGAACACCATTCAACTCCAACCATCTCCCTGTCCAGCTGCC
AGCCAGACCTGCGTCCCACAGGCAAACAGCGAGTGCCCACAGGCATGTCCTTCACCAACATCTA
CAGCACCTTGAGCGGCCAGGGCCGCCTCTACGACTATGGACAGAGGTTTGTACTGGGCATGGGC
AGCTCTTCCATTGAGCTTTGTGAGCGGGAGTTTCAGAGGGGCTCCCTCAGCGACAGCAGCTCCT
TCCTAGACACGCAGTGTGACAGCAGCGTCAGCAGCAGCGGCAAACAAGATGGCTACGTGCAGTT
TGACAAGGCCAGCAAGGCTTCTGCCTCCTCTTCCCACCACTCCCAGTCCTCTTCCCAGAACTCC
GACCCCAGTCGACCCCTGCAGCGGCGGATGCAGACTCACGTCTGAGGACCGACCAAGCACTGTG
GTGGGGATGGGCCAAAGAGGAGGACAGGCCACATTCTCGTTCTCCAAGGACTGGGGCTATTTTG
CAGAGGACCCTAGAACTGGCCACCTCCGGGGTGGCCTCCAAGCACCTCTGTTAACACCTTCCTT
CGAAGCTCTGATCAAGCACAAATCTGGCTCCCGGGTGGAAAATGAAGAGAGTGCGGTTGAGTGC
ATAGTGCTCAGGGCCTTTGTCTCGTGCTCTTCCCTAAAGGTCCCTCAAACACCTTGTCCTCCCA
TGGGCATTAGTGGCAGCTAGAACTTTGCTTTTATGAAACTGCCGTCCACTTTGCTAGCTCCTCT
TGCTGCCCATAAGCCATCCCTGATGCCTGTATTCCTTACAGCCTTGGGGAACGGAGGACCTTTT
CCCAGCACTGAGCTGCTCCGGAGACCCCAGCTTCCCCACTGTGGGTAGCCCATACCACAGAGGC
TGGAGGCTGAGAAATGACCCCGACCAAAGGAGTATTTGCCTGGGAGCCCGCCCCCACTTTGTTT
GGTGTTTGTGTCTGTATTCTTGCAGTTCTGTTTTTGGACTTGGTGCCTCTGAGCTCGGTGGTGG
GACTGGCCCATCCGAATCTAGTGTCCTCAGAGCCGAGGAAGGGAAGGAGAGAATGTGAACGCCT
GGAGAACAGCTGACCCAACACACCCTGTGCCAGGCTGTGCAGTTCAGAGCCCTCGCCCCCAACC
CTCACACCCTGCTTCCTGTTCTCCCTTCCTTCCCACAGCACAATCAAGCTAATATGAGGAGTGT
GAGAACTTCTCCTGTCAGGGTTTGTTGAACAGTCACTGCAGAGTGCTTCCTGGGAGGTGTGGGT
TTGAGGTGGGGTGGGGCTGAAATCTAGGCTGGAGGATGAGACAGACTCTTTCAGCTAATGACCA
CAAAGAACAATGATCCATTCTCCTGTAGACAGGACTCTGTGTGCAAGAGGGACAGTTTTCTTCA
CCTCTCCCATCACTCCCCACTTAAGAATAAACGTTAGGGCCATTACCCACAAAAAA

hide sequence

RefSeq Acc Id:

XM_039081392 ⟹ XP_038937320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	41,123,693 - 41,663,528 (+)	NCBI
mRatBN7.2	8	32,865,780 - 33,407,555 (+)	NCBI

RefSeq Acc Id:

XM_039081393 ⟹ XP_038937321

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	41,123,692 - 41,663,528 (+)	NCBI
mRatBN7.2	8	32,865,779 - 33,407,555 (+)	NCBI

RefSeq Acc Id:

XM_039081394 ⟹ XP_038937322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	41,123,695 - 41,663,528 (+)	NCBI
mRatBN7.2	8	32,865,783 - 33,407,555 (+)	NCBI

RefSeq Acc Id:

XM_039081395 ⟹ XP_038937323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	41,123,694 - 41,663,528 (+)	NCBI
mRatBN7.2	8	32,865,782 - 33,407,555 (+)	NCBI

RefSeq Acc Id:

XM_039081396 ⟹ XP_038937324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	41,123,694 - 41,663,528 (+)	NCBI
mRatBN7.2	8	32,865,782 - 33,404,801 (+)	NCBI

RefSeq Acc Id:

XM_039081397 ⟹ XP_038937325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	41,123,696 - 41,663,528 (+)	NCBI
mRatBN7.2	8	32,865,784 - 33,404,801 (+)	NCBI

RefSeq Acc Id:

XM_063265411 ⟹ XP_063121481

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	41,123,694 - 41,663,528 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001041680	(Get FASTA)	NCBI Sequence Viewer
	NP_001420722	(Get FASTA)	NCBI Sequence Viewer
	NP_001420723	(Get FASTA)	NCBI Sequence Viewer
	NP_001420724	(Get FASTA)	NCBI Sequence Viewer
	NP_001420725	(Get FASTA)	NCBI Sequence Viewer
	NP_001420726	(Get FASTA)	NCBI Sequence Viewer
	XP_038937320	(Get FASTA)	NCBI Sequence Viewer
	XP_038937321	(Get FASTA)	NCBI Sequence Viewer
	XP_038937322	(Get FASTA)	NCBI Sequence Viewer
	XP_038937323	(Get FASTA)	NCBI Sequence Viewer
	XP_038937324	(Get FASTA)	NCBI Sequence Viewer
	XP_038937325	(Get FASTA)	NCBI Sequence Viewer
	XP_063121481	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABI60897	(Get FASTA)	NCBI Sequence Viewer
	EDL83283	(Get FASTA)	NCBI Sequence Viewer
	EDL83284	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013036.7
	ENSRNOP00000073469
	ENSRNOP00000073469.2
	ENSRNOP00000080508
	ENSRNOP00000080508.1
	ENSRNOP00000103821.1
	ENSRNOP00000105467
	ENSRNOP00000105467.1

RefSeq Acc Id:	NP_001041680 ⟸ NM_001048215
- Peptide Label:	precursor
- UniProtKB:	Q09GS6 (UniProtKB/TrEMBL), E9PTD7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRPFQLDLLFLCFFLFSQELGLQRRGCCLVLGYMAKDKFRRMNEGQVYSFSQQPQDQVVVSGQP VTLLCAIPEYDGFVLWIKDGLALGVGRDLSSYPQYLVVGNHLSGEHHLKILRAELQDDAVYECQ AIQAAIRSRPARLTVLVPPDDPIILGGPVISLRAGDPLNLTCHADNAKPAASIIWLRKGEVING ATYSKTLLRDGKRESIVSTLFISPGDVENGQSIVCRATNKAIPGGKETSVTIDIQHPPLVNLSV EPQPVLEDNIVTFHCSAKANPAVTQYRWAKRGHIIKEASGELYRTTVDYTYFSEPVSCEVTNAL GSTNLSRTVDVYFGPRMTSEPQSLLVDLGSDAVFSCAWIGNPSLTIVWMKRGSGVVLSNEKTLT LKSVRQEDAGKYVCRAVVPRVGAGEREVTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPP DRIAWSWKENVLESGTSGRYTVETVNTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEII RLKEQESVPMAVIIGVAVGAGVAFLVLMATIVAFCCARSQRNLKGVVSAKNDIRVEIVHKEPAS GREAEDHTTIKQLMMDRGEFQQDSVLKQLEVLKEEEKEFQNLKDPTNGYYSVNTFKEHHSTPTI SLSSCQPDLRPTGKQRVPTGMSFTNIYSTLSGQGRLYDYGQRFVLGMGSSSIELCEREFQRGSL SDSSSFLDTQCDSSVSSSGKQDGYVQFDKASKASASSSHHSQSSSQNSDPSRPLQRRMQTHV hide sequence

Ensembl Acc Id:

ENSRNOP00000073469 ⟸ ENSRNOT00000088046

Ensembl Acc Id:

ENSRNOP00000013036 ⟸ ENSRNOT00000013036

RefSeq Acc Id:	XP_038937321 ⟸ XM_039081393
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038937320 ⟸ XM_039081392
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038937323 ⟸ XM_039081395
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038937324 ⟸ XM_039081396
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038937322 ⟸ XM_039081394
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038937325 ⟸ XM_039081397
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000080508 ⟸ ENSRNOT00000103546

RefSeq Acc Id:	XP_063121481 ⟸ XM_063265411
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000105467 ⟸ ENSRNOT00000154206

Ensembl Acc Id:

ENSRNOP00000103821 ⟸ ENSRNOT00000152782

Protein Domains

Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PTD7-F1-model_v2	AlphaFold	E9PTD7	1-761	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311382	AgrOrtholog
BioCyc Gene	G2FUF-31213	BioCyc
Ensembl Genes	ENSRNOG00000009772	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013036.8	UniProtKB/TrEMBL
	ENSRNOT00000088046	ENTREZGENE
	ENSRNOT00000088046.3	UniProtKB/TrEMBL
	ENSRNOT00000103546	ENTREZGENE
	ENSRNOT00000103546.2	UniProtKB/TrEMBL
	ENSRNOT00000152782.1	UniProtKB/TrEMBL
	ENSRNOT00000154206	ENTREZGENE
	ENSRNOT00000154206.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	CD80_C2-set	UniProtKB/TrEMBL
	Cell_adhesion_signaling	UniProtKB/TrEMBL
	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
KEGG Report	rno:315546	UniProtKB/TrEMBL
NCBI Gene	315546	ENTREZGENE
PANTHER	KIN OF IRRE-LIKE PROTEIN 3	UniProtKB/TrEMBL
	NEPHRIN	UniProtKB/TrEMBL
Pfam	C2-set_2	UniProtKB/TrEMBL
	I-set	UniProtKB/TrEMBL
	Ig_3	UniProtKB/TrEMBL
PhenoGen	Kirrel3	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009772	RatGTEx
SMART	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A0G2K5L4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZQV3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LPW0_RAT	UniProtKB/TrEMBL
	A0ABK0LTH1_RAT	UniProtKB/TrEMBL
	E9PTD7	ENTREZGENE, UniProtKB/TrEMBL
	Q09GS6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-06-21	Kirrel3	kirre like nephrin family adhesion molecule 3	Kirrel3	kin of IRRE like 3 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Kirrel3	kin of IRRE like 3 (Drosophila)	Kirrel3_predicted	kin of IRRE like 3 (Drosophila) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Kirrel3_predicted	kin of IRRE like 3 (Drosophila) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar