Fam210b (family with sequence similarity 210, member B) - Rat Genome Database

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Gene: Fam210b (family with sequence similarity 210, member B) Rattus norvegicus
Analyze
Symbol: Fam210b
Name: family with sequence similarity 210, member B
RGD ID: 1311378
Description: Predicted to be involved in cellular response to estradiol stimulus and positive regulation of erythrocyte differentiation. Predicted to be located in mitochondrial outer membrane. Predicted to be active in mitochondrion. Orthologous to human FAM210B (family with sequence similarity 210 member B); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC296408; LOC296408; RGD1311378; similar to RIKEN cDNA 2010011I20; uncharacterized protein LOC296408
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83181,536,665 - 181,546,830 (+)NCBIGRCr8
mRatBN7.23161,118,228 - 161,128,400 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3161,118,239 - 161,128,397 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3164,927,731 - 164,936,106 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03173,426,752 - 173,435,125 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03171,168,566 - 171,176,941 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03170,354,109 - 170,364,265 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3170,354,141 - 170,362,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03176,429,968 - 176,440,047 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43163,260,490 - 163,268,817 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13163,166,553 - 163,173,712 (+)NCBI
Celera3160,318,618 - 160,326,900 (+)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
camptothecin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
fipronil  (EXP)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glycitein  (ISO)
glycitin  (ISO)
hydralazine  (ISO)
ibuprofen  (ISO)
ifosfamide  (ISO)
indometacin  (ISO)
inulin  (ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
nitrofen  (EXP)
Nutlin-3  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phytoestrogen  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
Triptolide  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:26968549   PMID:34800366  


Genomics

Comparative Map Data
Fam210b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83181,536,665 - 181,546,830 (+)NCBIGRCr8
mRatBN7.23161,118,228 - 161,128,400 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3161,118,239 - 161,128,397 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3164,927,731 - 164,936,106 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03173,426,752 - 173,435,125 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03171,168,566 - 171,176,941 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03170,354,109 - 170,364,265 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3170,354,141 - 170,362,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03176,429,968 - 176,440,047 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43163,260,490 - 163,268,817 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13163,166,553 - 163,173,712 (+)NCBI
Celera3160,318,618 - 160,326,900 (+)NCBICelera
Cytogenetic Map3q42NCBI
FAM210B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382056,358,974 - 56,368,663 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2056,358,974 - 56,368,663 (+)EnsemblGRCh38hg38GRCh38
GRCh372054,934,030 - 54,943,719 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362054,367,390 - 54,377,126 (+)NCBINCBI36Build 36hg18NCBI36
Build 342054,367,428 - 54,377,123NCBI
Celera2051,673,330 - 51,683,066 (+)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2051,718,877 - 51,728,536 (+)NCBIHuRef
CHM1_12054,835,077 - 54,844,813 (+)NCBICHM1_1
T2T-CHM13v2.02058,136,516 - 58,146,109 (+)NCBIT2T-CHM13v2.0
Fam210b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392172,187,444 - 172,197,669 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2172,187,485 - 172,197,669 (+)EnsemblGRCm39 Ensembl
GRCm382172,345,570 - 172,355,749 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2172,345,565 - 172,355,749 (+)EnsemblGRCm38mm10GRCm38
MGSCv372172,171,077 - 172,181,249 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362172,036,814 - 172,046,954 (+)NCBIMGSCv36mm8
Celera2178,304,893 - 178,314,925 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map294.83NCBI
Fam210b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554452,853,915 - 2,862,345 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554452,854,077 - 2,862,259 (-)NCBIChiLan1.0ChiLan1.0
FAM210B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22162,106,057 - 62,115,850 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12062,099,194 - 62,108,962 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02052,697,268 - 52,707,031 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12053,976,039 - 53,994,154 (+)NCBIpanpan1.1PanPan1.1panPan2
FAM210B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12441,574,351 - 41,583,565 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2441,574,327 - 41,588,282 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2440,822,068 - 40,831,294 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02442,285,086 - 42,294,315 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2442,284,837 - 42,292,297 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12441,525,118 - 41,534,324 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02441,663,844 - 41,673,138 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02442,322,025 - 42,331,253 (+)NCBIUU_Cfam_GSD_1.0
Fam210b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640183,794,491 - 183,801,344 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936875284,664 - 291,649 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936875284,612 - 291,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM210B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1756,941,630 - 56,953,361 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11756,941,794 - 56,953,361 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21764,053,337 - 64,064,901 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM210B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.127,753,859 - 7,763,450 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl27,756,240 - 7,763,394 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605055,828,548 - 55,838,745 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam210b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624790161,200 - 170,707 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624790162,997 - 170,653 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam210b
67 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:435
Count of miRNA genes:237
Interacting mature miRNAs:282
Transcripts:ENSRNOT00000005901
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3145956084161299569Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat

Markers in Region
RH136682  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23161,126,306 - 161,126,511 (+)MAPPERmRatBN7.2
Rnor_6.03170,362,175 - 170,362,379NCBIRnor6.0
Rnor_5.03176,437,957 - 176,438,161UniSTSRnor5.0
RGSC_v3.43163,268,477 - 163,268,681UniSTSRGSC3.4
Celera3160,326,560 - 160,326,764UniSTS
RH 3.4 Map31493.1UniSTS
Cytogenetic Map3q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000005901   ⟹   ENSRNOP00000005901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3161,118,239 - 161,128,397 (+)Ensembl
Rnor_6.0 Ensembl3170,354,141 - 170,362,513 (+)Ensembl
RefSeq Acc Id: NM_001106547   ⟹   NP_001100017
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83181,536,706 - 181,545,080 (+)NCBI
mRatBN7.23161,118,272 - 161,126,647 (+)NCBI
Rnor_6.03170,354,141 - 170,362,515 (+)NCBI
Rnor_5.03176,429,968 - 176,440,047 (+)NCBI
RGSC_v3.43163,260,490 - 163,268,817 (+)RGD
Celera3160,318,618 - 160,326,900 (+)RGD
Sequence:
RefSeq Acc Id: XM_006235677   ⟹   XP_006235739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83181,536,672 - 181,546,830 (+)NCBI
mRatBN7.23161,118,235 - 161,128,400 (+)NCBI
Rnor_6.03170,354,109 - 170,364,265 (+)NCBI
Rnor_5.03176,429,968 - 176,440,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104648   ⟹   XP_038960576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83181,536,665 - 181,543,694 (+)NCBI
mRatBN7.23161,118,228 - 161,125,192 (+)NCBI
RefSeq Acc Id: XM_039104649   ⟹   XP_038960577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83181,536,921 - 181,546,830 (+)NCBI
mRatBN7.23161,118,561 - 161,128,400 (+)NCBI
RefSeq Acc Id: XM_063283416   ⟹   XP_063139486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83181,536,921 - 181,546,830 (+)NCBI
RefSeq Acc Id: NP_001100017   ⟸   NM_001106547
- UniProtKB: B2RYM8 (UniProtKB/TrEMBL),   A6KKW6 (UniProtKB/TrEMBL),   F7FD17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235739   ⟸   XM_006235677
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000005901   ⟸   ENSRNOT00000005901
RefSeq Acc Id: XP_038960576   ⟸   XM_039104648
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038960577   ⟸   XM_039104649
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063139486   ⟸   XM_063283416
- Peptide Label: isoform X3
Protein Domains
DUF1279

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYM8-F1-model_v2 AlphaFold B2RYM8 1-190 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692704
Promoter ID:EPDNEW_R3229
Type:initiation region
Name:Fam210b_1
Description:family with sequence similarity 210, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03170,354,126 - 170,354,186EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311378 AgrOrtholog
BioCyc Gene G2FUF-46542 BioCyc
Ensembl Genes ENSRNOG00000004466 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005901.5 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9024310 IMAGE-MGC_LOAD
InterPro DUF1279 UniProtKB/TrEMBL
  FAM210A/B-like UniProtKB/TrEMBL
KEGG Report rno:296408 UniProtKB/TrEMBL
MGC_CLONE MGC:188726 IMAGE-MGC_LOAD
NCBI Gene 296408 ENTREZGENE
PANTHER PROTEIN FAM210B, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR21377 UniProtKB/TrEMBL
Pfam DUF1279 UniProtKB/TrEMBL
PhenoGen Fam210b PhenoGen
RatGTEx ENSRNOG00000004466 RatGTEx
UniProt A6KKW6 ENTREZGENE, UniProtKB/TrEMBL
  B2RYM8 ENTREZGENE
  F7FD17 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B2RYM8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-12-06 Fam210b  family with sequence similarity 210, member B  RGD1311378  similar to RIKEN cDNA 2010011I20  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1311378  similar to RIKEN cDNA 2010011I20   RGD1311378_predicted  similar to RIKEN cDNA 2010011I20 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311378_predicted  similar to RIKEN cDNA 2010011I20 (predicted)  LOC296408_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC296408_predicted  similar to RIKEN cDNA 2010011I20 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL