Tmem218 (transmembrane protein 218) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tmem218 (transmembrane protein 218) Rattus norvegicus
Analyze
Symbol: Tmem218
Name: transmembrane protein 218
RGD ID: 1311364
Description: Predicted to be located in cilium and membrane. Human ortholog(s) of this gene implicated in Joubert syndrome. Orthologous to human TMEM218 (transmembrane protein 218); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC300516; MGC105984; RGD1311364; similar to RIKEN cDNA 1810021J13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8845,113,368 - 45,128,739 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl845,113,427 - 45,129,152 (+)EnsemblGRCr8
mRatBN7.2836,924,553 - 36,940,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl836,924,585 - 36,939,927 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx840,934,537 - 40,949,885 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0839,217,611 - 39,232,959 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0837,080,514 - 37,095,863 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0839,687,280 - 39,702,722 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl839,687,269 - 39,702,902 (+)Ensemblrn6Rnor6.0
Rnor_5.0839,687,841 - 39,704,008 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4838,459,286 - 38,474,642 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera837,505,411 - 37,520,737 (-)NCBICelera
RGSC_v3.1838,468,051 - 38,483,407 (+)NCBI
Cytogenetic Map8q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cilium  (IEA)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Tmem218
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8845,113,368 - 45,128,739 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl845,113,427 - 45,129,152 (+)EnsemblGRCr8
mRatBN7.2836,924,553 - 36,940,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl836,924,585 - 36,939,927 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx840,934,537 - 40,949,885 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0839,217,611 - 39,232,959 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0837,080,514 - 37,095,863 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0839,687,280 - 39,702,722 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl839,687,269 - 39,702,902 (+)Ensemblrn6Rnor6.0
Rnor_5.0839,687,841 - 39,704,008 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4838,459,286 - 38,474,642 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera837,505,411 - 37,520,737 (-)NCBICelera
RGSC_v3.1838,468,051 - 38,483,407 (+)NCBI
Cytogenetic Map8q22NCBI
TMEM218
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811125,094,389 - 125,111,626 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11125,094,386 - 125,111,870 (-)Ensemblhg38GRCh38
GRCh3711124,964,285 - 124,981,522 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611124,471,608 - 124,478,415 (-)NCBIBuild 36Build 36hg18NCBI36
Celera11122,126,435 - 122,133,242 (-)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11120,906,345 - 120,923,734 (-)NCBIHuRef
CHM1_111124,850,310 - 124,867,709 (-)NCBICHM1_1
T2T-CHM13v2.011125,123,053 - 125,140,287 (-)NCBIT2T-CHM13v2.0
Tmem218
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39937,119,519 - 37,134,524 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl937,119,519 - 37,135,996 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38937,208,223 - 37,223,228 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl937,208,223 - 37,224,700 (+)Ensemblmm10GRCm38
MGSCv37937,015,918 - 37,030,796 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36936,958,004 - 36,972,882 (+)NCBIMGSCv36mm8
Celera934,421,339 - 34,437,444 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.74NCBI
Tmem218
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541226,151,452 - 26,166,470 (-)Ensembl
ChiLan1.0NW_00495541226,149,816 - 26,166,470 (-)NCBIChiLan1.0ChiLan1.0
TMEM218
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29125,791,275 - 125,807,480 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111126,897,561 - 126,912,333 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011119,924,220 - 119,938,931 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111123,838,459 - 123,853,190 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11123,839,054 - 123,843,682 (-)EnsemblpanPan2panpan1.1
TMEM218
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.159,363,910 - 9,377,471 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl59,371,556 - 9,377,112 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha59,408,241 - 9,422,323 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.059,302,550 - 9,316,639 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl59,310,764 - 9,318,422 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.159,375,367 - 9,389,428 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.059,345,896 - 9,359,966 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.059,382,459 - 9,396,547 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem218
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947107,270,364 - 107,287,819 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367431,517,113 - 1,535,329 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367431,519,531 - 1,535,302 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM218
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl952,260,508 - 52,302,638 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1952,270,691 - 52,302,766 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2957,773,829 - 57,818,268 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM218
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11116,257,539 - 116,272,815 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1116,257,158 - 116,272,859 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660439,849,776 - 9,864,598 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem218
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249271,136,636 - 1,163,757 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249271,137,223 - 1,163,880 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem218
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1833,388,654 - 33,405,415 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem218
30 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:57
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000012060
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625851589833Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83776085958991895Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83776085961459705Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)83412590255607752Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83910625849610361Rat

Markers in Region
RH133660  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2836,939,644 - 36,939,864 (+)MAPPERmRatBN7.2
Rnor_6.0839,702,437 - 39,702,656NCBIRnor6.0
Rnor_5.0839,702,990 - 39,703,209UniSTSRnor5.0
RGSC_v3.4838,474,357 - 38,474,576UniSTSRGSC3.4
Celera837,505,477 - 37,505,696UniSTS
RH 3.4 Map8320.0UniSTS
Cytogenetic Map8q21UniSTS
G44836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2836,927,470 - 36,927,716 (+)MAPPERmRatBN7.2
Rnor_6.0839,690,263 - 39,690,508NCBIRnor6.0
Rnor_5.0839,690,816 - 39,691,061UniSTSRnor5.0
RGSC_v3.4838,462,152 - 38,462,397UniSTSRGSC3.4
Celera837,517,626 - 37,517,871UniSTS
Cytogenetic Map8q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012060   ⟹   ENSRNOP00000012060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl845,113,427 - 45,129,152 (+)Ensembl
mRatBN7.2 Ensembl836,924,585 - 36,939,927 (+)Ensembl
Rnor_6.0 Ensembl839,687,269 - 39,702,902 (+)Ensembl
RefSeq Acc Id: NM_001008325   ⟹   NP_001008326
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8845,113,414 - 45,128,739 (+)NCBI
mRatBN7.2836,924,605 - 36,939,930 (+)NCBI
Rnor_6.0839,687,397 - 39,702,722 (+)NCBI
Rnor_5.0839,687,841 - 39,704,008 (+)NCBI
RGSC_v3.4838,459,286 - 38,474,642 (+)RGD
Celera837,505,411 - 37,520,737 (-)RGD
Sequence:
RefSeq Acc Id: XM_008766050   ⟹   XP_008764272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8845,113,368 - 45,128,739 (+)NCBI
mRatBN7.2836,924,553 - 36,940,564 (+)NCBI
Rnor_6.0839,687,280 - 39,702,722 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001008326 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764272 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85342 (Get FASTA)   NCBI Sequence Viewer  
  EDL84054 (Get FASTA)   NCBI Sequence Viewer  
  EDL84055 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012060.3
GenBank Protein Q5U3Y9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001008326   ⟸   NM_001008325
- UniProtKB: Q5U3Y9 (UniProtKB/Swiss-Prot),   A6KRM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764272   ⟸   XM_008766050
- Peptide Label: isoform X1
- UniProtKB: Q5U3Y9 (UniProtKB/Swiss-Prot),   A6KRM2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012060   ⟸   ENSRNOT00000012060

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U3Y9-F1-model_v2 AlphaFold Q5U3Y9 1-115 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695857
Promoter ID:EPDNEW_R6381
Type:initiation region
Name:Tmem218_1
Description:transmembrane protein 218
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0839,687,409 - 39,687,469EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311364 AgrOrtholog
BioCyc Gene G2FUF-31093 BioCyc
Ensembl Genes ENSRNOG00000008757 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000012060.7 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7303171 IMAGE-MGC_LOAD
InterPro Tmem218 UniProtKB/Swiss-Prot
KEGG Report rno:300516 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105984 IMAGE-MGC_LOAD
NCBI Gene 300516 ENTREZGENE
PANTHER PTHR31622 UniProtKB/Swiss-Prot
  TRANSMEMBRANE PROTEIN 218 UniProtKB/Swiss-Prot
PhenoGen Tmem218 PhenoGen
RatGTEx ENSRNOG00000008757 RatGTEx
UniProt A6KRM2 ENTREZGENE, UniProtKB/TrEMBL
  Q5U3Y9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-09 Tmem218  transmembrane protein 218  RGD1311364  similar to RIKEN cDNA 1810021J13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311364  similar to RIKEN cDNA 1810021J13  RGD1311364_predicted  similar to RIKEN cDNA 1810021J13 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311364_predicted  similar to RIKEN cDNA 1810021J13 (predicted)  LOC300516_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC300516_predicted  similar to RIKEN cDNA 1810021J13 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL