Cep57l1 (centrosomal protein 57-like 1) - Rat Genome Database

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Gene: Cep57l1 (centrosomal protein 57-like 1) Rattus norvegicus
Analyze
Symbol: Cep57l1
Name: centrosomal protein 57-like 1
RGD ID: 1311358
Description: Predicted to enable identical protein binding activity and microtubule binding activity. Predicted to be located in cytoplasm and microtubule. Predicted to be active in centrosome. Orthologous to human CEP57L1 (centrosomal protein 57 like 1); INTERACTS WITH acetamide; furan; oxaliplatin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein 57kDa-like protein 1; centrosomal protein CEP57L1; centrosomal protein of 57 kDa-related protein; cep57-related protein; cep57R; LOC294519; RGD1311358; similar to RIKEN cDNA 2410017P07
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,820,350 - 46,876,911 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2046,820,353 - 46,876,926 (-)EnsemblGRCr8
mRatBN7.22045,238,039 - 45,294,575 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2045,238,044 - 45,294,540 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2046,956,335 - 47,011,994 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02046,606,519 - 46,662,181 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02047,306,067 - 47,361,761 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02046,610,144 - 46,666,780 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,610,146 - 46,666,830 (-)Ensemblrn6Rnor6.0
Rnor_5.02048,290,241 - 48,346,896 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42045,730,365 - 45,785,949 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2054,662,904 - 54,718,387 (+)NCBICelera
RGSC_v3.12045,753,376 - 45,808,960 (-)NCBI
Cytogenetic Map20q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (IBA,IEA)
microtubule  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:25416956  


Genomics

Comparative Map Data
Cep57l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,820,350 - 46,876,911 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2046,820,353 - 46,876,926 (-)EnsemblGRCr8
mRatBN7.22045,238,039 - 45,294,575 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2045,238,044 - 45,294,540 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2046,956,335 - 47,011,994 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02046,606,519 - 46,662,181 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02047,306,067 - 47,361,761 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02046,610,144 - 46,666,780 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,610,146 - 46,666,830 (-)Ensemblrn6Rnor6.0
Rnor_5.02048,290,241 - 48,346,896 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42045,730,365 - 45,785,949 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2054,662,904 - 54,718,387 (+)NCBICelera
RGSC_v3.12045,753,376 - 45,808,960 (-)NCBI
Cytogenetic Map20q12NCBI
CEP57L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386109,095,163 - 109,174,418 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6109,095,105 - 109,174,418 (+)Ensemblhg38GRCh38
GRCh376109,416,366 - 109,495,621 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,523,049 - 109,591,808 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346109,557,199 - 109,591,796NCBI
Celera6110,162,263 - 110,231,004 (+)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6106,981,952 - 107,050,575 (+)NCBIHuRef
CHM1_16109,679,463 - 109,748,218 (+)NCBICHM1_1
T2T-CHM13v2.06110,273,270 - 110,352,465 (+)NCBIT2T-CHM13v2.0
Cep57l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391041,594,836 - 41,686,413 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1041,594,836 - 41,685,867 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381041,718,840 - 41,809,868 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1041,718,840 - 41,809,871 (-)Ensemblmm10GRCm38
MGSCv371041,438,652 - 41,529,436 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361041,407,261 - 41,498,290 (-)NCBIMGSCv36mm8
Celera1042,599,183 - 42,689,951 (-)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.69NCBI
Cep57l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541134,187,569 - 34,212,182 (+)Ensembl
ChiLan1.0NW_00495541134,140,830 - 34,213,086 (+)NCBIChiLan1.0ChiLan1.0
CEP57L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25129,102,292 - 129,171,259 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16126,993,709 - 127,073,473 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06106,896,158 - 106,965,644 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16110,945,840 - 111,015,188 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6110,980,433 - 111,015,188 (+)EnsemblpanPan2panpan1.1
CEP57L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11266,058,098 - 66,133,632 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1266,058,418 - 66,127,027 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1265,876,771 - 65,949,828 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01266,940,018 - 67,013,064 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1266,940,121 - 67,013,823 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11266,290,328 - 66,363,496 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01266,138,500 - 66,211,501 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01266,410,744 - 66,483,713 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cep57l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946101,017,143 - 101,060,042 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365645,299,512 - 5,337,844 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365645,292,214 - 5,335,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP57L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,171,061 - 75,227,022 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1175,170,989 - 75,228,210 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,464,737 - 84,559,239 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP57L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11364,700,812 - 64,755,742 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1364,702,595 - 64,718,542 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604036,985,370 - 37,057,617 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep57l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624916379,522 - 404,186 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624916333,369 - 407,633 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cep57l1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11841,419,762 - 41,477,179 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cep57l1
541 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:94
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000000331
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
AI535549  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22045,238,881 - 45,239,037 (+)MAPPERmRatBN7.2
Rnor_6.02046,610,987 - 46,611,142NCBIRnor6.0
Rnor_5.02048,291,084 - 48,291,239UniSTSRnor5.0
RGSC_v3.42045,730,370 - 45,730,525UniSTSRGSC3.4
Celera2054,718,227 - 54,718,382UniSTS
RH 3.4 Map20483.2UniSTS
Cytogenetic Map20q12-q13UniSTS
D20Rat57  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22045,278,409 - 45,278,532 (+)MAPPERmRatBN7.2
Rnor_6.02046,650,728 - 46,650,850NCBIRnor6.0
Rnor_5.02048,330,825 - 48,330,947UniSTSRnor5.0
RGSC_v3.42045,769,897 - 45,770,019UniSTSRGSC3.4
Celera2054,678,834 - 54,678,956UniSTS
Cytogenetic Map20q12-q13UniSTS
BE102254  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22045,287,849 - 45,288,006 (+)MAPPERmRatBN7.2
Rnor_6.02046,660,091 - 46,660,247NCBIRnor6.0
Rnor_5.02048,340,188 - 48,340,344UniSTSRnor5.0
RGSC_v3.42045,779,260 - 45,779,416UniSTSRGSC3.4
Celera2054,669,437 - 54,669,593UniSTS
RH 3.4 Map20484.41UniSTS
Cytogenetic Map20q12-q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000331   ⟹   ENSRNOP00000000331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2046,820,353 - 46,876,588 (-)Ensembl
mRatBN7.2 Ensembl2045,238,044 - 45,294,257 (-)Ensembl
Rnor_6.0 Ensembl2046,610,146 - 46,666,830 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093787   ⟹   ENSRNOP00000095046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2046,821,188 - 46,876,743 (-)Ensembl
mRatBN7.2 Ensembl2045,238,049 - 45,294,387 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094398   ⟹   ENSRNOP00000084661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2046,821,188 - 46,844,382 (-)Ensembl
mRatBN7.2 Ensembl2045,238,093 - 45,262,074 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104623   ⟹   ENSRNOP00000090876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2046,821,188 - 46,876,926 (-)Ensembl
mRatBN7.2 Ensembl2045,238,044 - 45,294,257 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111438   ⟹   ENSRNOP00000089494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2046,821,188 - 46,876,847 (-)Ensembl
mRatBN7.2 Ensembl2045,238,877 - 45,294,540 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000166206   ⟹   ENSRNOP00000108566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2046,821,188 - 46,852,577 (-)Ensembl
RefSeq Acc Id: NM_001017448   ⟹   NP_001017448
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,821,188 - 46,876,847 (-)NCBI
mRatBN7.22045,238,877 - 45,294,540 (-)NCBI
Rnor_6.02046,610,982 - 46,666,780 (-)NCBI
Rnor_5.02048,290,241 - 48,346,896 (-)NCBI
RGSC_v3.42045,730,365 - 45,785,949 (-)RGD
Celera2054,662,904 - 54,718,387 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256562   ⟹   XP_006256624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,821,188 - 46,876,845 (-)NCBI
mRatBN7.22045,238,039 - 45,294,375 (-)NCBI
Rnor_6.02046,610,144 - 46,666,659 (-)NCBI
Rnor_5.02048,290,241 - 48,346,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256563   ⟹   XP_006256625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,821,188 - 46,876,866 (-)NCBI
mRatBN7.22045,238,039 - 45,294,380 (-)NCBI
Rnor_6.02046,610,144 - 46,666,660 (-)NCBI
Rnor_5.02048,290,241 - 48,346,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256565   ⟹   XP_006256627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,821,188 - 46,876,882 (-)NCBI
mRatBN7.22045,238,039 - 45,294,575 (-)NCBI
Rnor_6.02046,610,144 - 46,666,763 (-)NCBI
Rnor_5.02048,290,241 - 48,346,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256566   ⟹   XP_006256628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,821,188 - 46,845,062 (-)NCBI
mRatBN7.22045,238,039 - 45,262,746 (-)NCBI
Rnor_6.02046,610,144 - 46,635,756 (-)NCBI
Rnor_5.02048,290,241 - 48,346,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256567   ⟹   XP_006256629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,821,188 - 46,876,567 (-)NCBI
mRatBN7.22045,238,039 - 45,294,315 (-)NCBI
Rnor_6.02046,610,144 - 46,666,496 (-)NCBI
Rnor_5.02048,290,241 - 48,346,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098618   ⟹   XP_038954546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,821,188 - 46,847,294 (-)NCBI
mRatBN7.22045,238,039 - 45,265,171 (-)NCBI
RefSeq Acc Id: XM_039098619   ⟹   XP_038954547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,820,350 - 46,876,845 (-)NCBI
mRatBN7.22045,238,039 - 45,294,385 (-)NCBI
RefSeq Acc Id: XM_039098621   ⟹   XP_038954549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,821,188 - 46,844,210 (-)NCBI
mRatBN7.22045,238,039 - 45,261,902 (-)NCBI
RefSeq Acc Id: XM_063279076   ⟹   XP_063135146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,821,188 - 46,876,911 (-)NCBI
RefSeq Acc Id: XM_063279077   ⟹   XP_063135147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,821,188 - 46,845,063 (-)NCBI
RefSeq Acc Id: XM_063279078   ⟹   XP_063135148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,820,350 - 46,845,064 (-)NCBI
RefSeq Acc Id: NP_001017448   ⟸   NM_001017448
- UniProtKB: A0A0H2UH91 (UniProtKB/TrEMBL),   A6K701 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256627   ⟸   XM_006256565
- Peptide Label: isoform X3
- UniProtKB: Q6AXZ4 (UniProtKB/Swiss-Prot),   A6K701 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256625   ⟸   XM_006256563
- Peptide Label: isoform X2
- UniProtKB: A6K701 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256624   ⟸   XM_006256562
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GLF7 (UniProtKB/TrEMBL),   A6K701 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256629   ⟸   XM_006256567
- Peptide Label: isoform X3
- UniProtKB: Q6AXZ4 (UniProtKB/Swiss-Prot),   A6K701 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256628   ⟸   XM_006256566
- Peptide Label: isoform X3
- UniProtKB: Q6AXZ4 (UniProtKB/Swiss-Prot),   A6K701 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000331   ⟸   ENSRNOT00000000331
RefSeq Acc Id: XP_038954547   ⟸   XM_039098619
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038954546   ⟸   XM_039098618
- Peptide Label: isoform X3
- UniProtKB: Q6AXZ4 (UniProtKB/Swiss-Prot),   A6K701 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954549   ⟸   XM_039098621
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZZL1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089494   ⟸   ENSRNOT00000111438
Ensembl Acc Id: ENSRNOP00000090876   ⟸   ENSRNOT00000104623
Ensembl Acc Id: ENSRNOP00000095046   ⟸   ENSRNOT00000093787
Ensembl Acc Id: ENSRNOP00000084661   ⟸   ENSRNOT00000094398
RefSeq Acc Id: XP_063135148   ⟸   XM_063279078
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063135146   ⟸   XM_063279076
- Peptide Label: isoform X4
- UniProtKB: A6K701 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135147   ⟸   XM_063279077
- Peptide Label: isoform X5
- UniProtKB: A6K701 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108566   ⟸   ENSRNOT00000166206
Protein Domains
Cep57 centrosome localisation   Cep57 centrosome microtubule-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AXZ4-F1-model_v2 AlphaFold Q6AXZ4 1-430 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701668
Promoter ID:EPDNEW_R12191
Type:multiple initiation site
Name:Cep57l1_1
Description:centrosomal protein 57-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02046,666,802 - 46,666,862EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311358 AgrOrtholog
BioCyc Gene G2FUF-3389 BioCyc
Ensembl Genes ENSRNOG00000000303 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000000331.6 UniProtKB/Swiss-Prot
  ENSRNOT00000094398 ENTREZGENE
  ENSRNOT00000104623 ENTREZGENE
  ENSRNOT00000111438 ENTREZGENE
  ENSRNOT00000166206 ENTREZGENE
Gene3D-CATH 1.20.58.90 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7133287 IMAGE-MGC_LOAD
InterPro Centrosomal_MT-associated UniProtKB/Swiss-Prot
  Cep57_CLD UniProtKB/Swiss-Prot
  Cep57_MT-bd_dom UniProtKB/Swiss-Prot
MGC_CLONE MGC:94355 IMAGE-MGC_LOAD
NCBI Gene 294519 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN CEP57L1 UniProtKB/Swiss-Prot
  UNCHARACTERIZED DUF1167 UniProtKB/Swiss-Prot
Pfam Cep57_CLD UniProtKB/Swiss-Prot
  Cep57_MT_bd UniProtKB/Swiss-Prot
PhenoGen Cep57l1 PhenoGen
RatGTEx ENSRNOG00000000303 RatGTEx
UniProt A0A0H2UH91 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZL1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GIL1_RAT UniProtKB/TrEMBL
  A0A8I6GLF7 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LRH8_RAT UniProtKB/TrEMBL
  A6K701 ENTREZGENE, UniProtKB/TrEMBL
  CE57L_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-05-25 Cep57l1   centrosomal protein 57-like 1   RGD1311358  similar to RIKEN cDNA 2410017P07  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311358  similar to RIKEN cDNA 2410017P07  RGD1311358_predicted  similar to RIKEN cDNA 2410017P07 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311358_predicted  similar to RIKEN cDNA 2410017P07 (predicted)  LOC294519_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294519_predicted  similar to RIKEN cDNA 2410017P07 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL