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Gene: C10h5orf47 (similar to human chromosome 5 open reading frame 47) Rattus norvegicus

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Symbol:

C10h5orf47

Name:

similar to human chromosome 5 open reading frame 47

RGD ID:

1311343

Description:

Orthologous to human C5orf47 (chromosome 5 open reading frame 47); INTERACTS WITH bisphenol A; cadmium dichloride; N,N-diethyl-m-toluamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC360506; LOC360506; RGD1311343; similar to RIKEN cDNA 4930524B15; uncharacterized protein C5orf47 homolog; uncharacterized protein LOC360506

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	16,184,999 - 16,198,515 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	16,184,999 - 16,198,419 (-)	Ensembl				GRCr8
mRatBN7.2	10	15,680,525 - 15,694,014 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	15,680,525 - 15,693,945 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	20,428,117 - 20,441,532 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	19,917,022 - 19,930,437 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	15,407,176 - 15,420,610 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	15,947,253 - 15,960,728 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	15,947,253 - 15,960,673 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	15,841,445 - 15,854,927 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	15,928,113 - 15,941,533 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	15,346,869 - 15,360,289 (-)	NCBI		Celera
RGSC_v3.1	10	15,931,496 - 15,942,559 (-)	NCBI
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

4,4'-sulfonyldiphenol (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

N,N-diethyl-m-toluamide (EXP)

permethrin (EXP)

trichostatin A (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

C10h5orf47
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	16,184,999 - 16,198,515 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	16,184,999 - 16,198,419 (-)	Ensembl				GRCr8
mRatBN7.2	10	15,680,525 - 15,694,014 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	15,680,525 - 15,693,945 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	20,428,117 - 20,441,532 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	19,917,022 - 19,930,437 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	15,407,176 - 15,420,610 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	15,947,253 - 15,960,728 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	15,947,253 - 15,960,673 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	15,841,445 - 15,854,927 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	15,928,113 - 15,941,533 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	15,346,869 - 15,360,289 (-)	NCBI		Celera
RGSC_v3.1	10	15,931,496 - 15,942,559 (-)	NCBI
Cytogenetic Map	10	q12	NCBI

C5orf47
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	173,989,170 - 174,009,548 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	173,973,779 - 174,006,140 (+)	Ensembl			hg38	GRCh38
GRCh37	5	173,416,173 - 173,433,143 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	173,333,391 - 173,365,749 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	169,448,431 - 169,465,412 (+)	NCBI		Celera
Cytogenetic Map	5	q35.2	NCBI
HuRef	5	168,512,597 - 168,529,577 (+)	NCBI		HuRef
CHM1_1	5	172,848,754 - 172,865,735 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	174,529,506 - 174,549,885 (+)	NCBI		T2T-CHM13v2.0

4930524B15Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	31,915,577 - 31,929,653 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	31,915,592 - 31,929,651 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	31,965,554 - 31,979,655 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	31,965,592 - 31,979,651 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	31,865,633 - 31,879,651 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	31,865,633 - 31,879,651 (+)	NCBI		MGSCv36	mm8
Celera	11	34,379,712 - 34,393,732 (+)	NCBI		Celera
Cytogenetic Map	11	A4	NCBI
cM Map	11	18.71	NCBI

CUNH5orf47
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955408	26,629,049 - 26,664,803 (+)	NCBI	ChiLan1.0	ChiLan1.0

C4H5orf47
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	38,573,453 - 38,599,648 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	38,519,685 - 38,534,878 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	38,946,592 - 38,961,860 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	38,946,554 - 38,961,920 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	38,763,201 - 38,778,352 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	38,951,263 - 38,966,426 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	39,459,885 - 39,475,119 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH5orf47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	93,037,992 - 93,051,857 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936609	1,763,214 - 1,774,529 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C16H5orf47
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	50,387,567 - 50,400,272 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	50,383,299 - 50,400,228 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

C23H5orf47
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	76,138,822 - 76,156,825 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	76,139,841 - 76,150,436 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	2,452,756 - 2,465,261 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH5orf47
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	16,041,398 - 16,054,443 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C9H5orf47
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	3,957,724 - 3,968,919 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C10h5orf47
92 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	623
Count of miRNA genes:	275
Interacting mature miRNAs:	339
Transcripts:	ENSRNOT00000036447
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	15762230	19737486	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
6	1	16	65	43	39	24	22	24	6	87	52	1	53	4	51	15	3	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000036447 ⟹ ENSRNOP00000033381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	16,184,999 - 16,198,419 (-)	Ensembl
mRatBN7.2 Ensembl	10	15,680,525 - 15,693,945 (-)	Ensembl
Rnor_6.0 Ensembl	10	15,947,253 - 15,960,673 (-)	Ensembl

RefSeq Acc Id:

NM_001108270 ⟹ NP_001101740

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,184,999 - 16,198,419 (-)	NCBI
mRatBN7.2	10	15,680,525 - 15,693,945 (-)	NCBI
Rnor_6.0	10	15,947,253 - 15,960,673 (-)	NCBI
Rnor_5.0	10	15,841,445 - 15,854,927 (-)	NCBI
RGSC_v3.4	10	15,928,113 - 15,941,533 (-)	RGD
Celera	10	15,346,869 - 15,360,289 (-)	RGD

Sequence:

show sequence

AGGTCGCCTGACAGGAAGCCGAGATGCTTCCCACCCGCAGCCGGCAAAGGCCAGATGGGCCTCG
CTTGATCTACGTGACCCGCTTCGCCTCACACCGCCATGGCGTGTGGCAGTTGAGGGGCCTCCGA
GGTTTCGGCCATCGAGGCCCAGGATTCGAGGCCCGCTGTGCCATAAAGCAAGCAGCGGTGGAGC
CCGAGCCCCCGGGAGGAGAGCAGCCCACCGGTTCCCAGGCCGGGGTCACCGAAAGCCCAGATTC
TGCCTCTTTCCAGTGGACGTCGACAGCGCCCAGGGGCCAGGAGCGAGCAGCGCGGCCAGGTTTA
AACCAGAAAAATGCAACGAAAGAGTTTGATTTCCCCATACAACTGAATGAAGCCTCCAAACTAA
TGAAGGCGAGAAAAAAGGCCTCTGTGTGGAACAAAGTACATCAGGTCATTTCCAGAATGATTGC
AGAAAATGAAAAATACAGACAGAGACTGAAGTGCCACAATTTATCTAGTGACATTCCAGTTACT
ACAAGATGAATGTGAACCTTCCTGTCTTCTCTGAATTGGTGACAGAGGTTGGGGAGCCAAGCAC
CTTCCTGGGGCTCAAGAAGCCACTTTTCTGTAGGCTCCTGGGACATGCTTTGCTTTTGGTCCAC
ACTGTGGACAGGACACACAGGAAGAGACACTCTCCCCAACTCCCCAACTGCAGATGTCTGAACT
GGACGAGAACCCAAAAGTATGTTTTGGACAACAACATGCATGGCATCAGTGAGAGGGTTCCTCA
CGAAGCTGTTAGAAAATGCAAATATGCAAAATTCTTATGAAGTCATACAATAATTTGTGGGTTT
GTTTCCTTCTAAGCTACAACTCCCTCCCTTCATGAGACTGAACAACTTTGGTGTTGTGGTTGTT
TGTTCTTTAAATGACTAGTAAATCCTCCTGCCTCCAGTTGCAGGGCGCAGGCCCCCTAGGCAGT
GGCCTATGAGAGACAGTTTCCCTGCACACAGGCTTCTCCTACTTCTCTAGACAATGCTAAGTAC
AGTTTGGCTTTGCTGTCCCTCAGTACAGTTCTAAATGTTAGTGTATACAAGCCAAACCTACTGC
CAAATGGACGGTGGTGTAAACCTCACTGCATAAAATTTTGTGGAGAATGTGGACAAAGATTTTA
GCTACATTTATGTTTGTATGACCTGCTGACTCTTTATGGAAACAGCCTGCTTTATCAGACCTGT
CAGTATGTATTCATTTCACTGTACGAGTGTCATGCGGGAGACATTGTGTCCCACTGTTCTAGAA
CCATACAGCTCTAAAGACTTCCATAGAAATGAATGTTCTAAATGTTTTATTTATTGTTTAATAA
TTTCTGCTGAAATATGTTTTGTTGAATAGAAGAGAAATACAATGTGAATTTTCTTCTGGAATAT
TGTGCAGCAAGTATGACACCATGATTTGTTCACCATTTTAGATTCCTATCAGGAACTGATGCCC
TCTTCATGAGAATCCAAGACTGTGTGTTTCCAAGTTACATACATGTCTATTGGAGCCGTGGACA
TAAGATTTTCACATTCCCTTCTTCATCTCATACTCTTCAGTCTTTCCACTGGTCTGTGCCAGAG
GAACATTCACTCATCAATTCTATTCCTGATTTGTCTTTTTCTTTGCTTAAATCAGTTTTATTTA
AGCCCATCGTCCATTCTTGTTATTCTAAGAAATGTACCACAAATGATTCTACCGTCTCAGGAGT
GTCATAGAGTACACTCACACAAAGTGGCCTGAGTCATCACTGAGCATGGCTCCCACTGCAGCAA
GGGTGACCATAAACACAAGGCATGTGAGCCTGCTGCCCGTGTAATGGGGAATTCTGCTTTAAAC
AAAAAGCTTTCCTATAAATAAAAGTAATGTTCATTAGTGATGAAAACAGTATGTTGACAAGATA
AAGCAGTAA

hide sequence

RefSeq Acc Id:

XM_006246018 ⟹ XP_006246080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,187,334 - 16,198,515 (-)	NCBI
mRatBN7.2	10	15,682,854 - 15,694,014 (-)	NCBI
Rnor_6.0	10	15,949,588 - 15,960,728 (-)	NCBI
Rnor_5.0	10	15,841,445 - 15,854,927 (-)	NCBI

Sequence:

show sequence

CCCCACTCCCCCCCACACACACACACGCACAGTCACACACCCGGGTCCTGTGCATAGGTCGCCT
GACAGGAAGCCGAGATGCTTCCCACCCGCAGCCGGCAAAGGCCAGATGGGCCTCGCTTGATCTA
CGTGACCCGCTTCGCCTCACACCGCCATGGCGTGTGGCAGTTGAGGGGCCTCCGAGGTTTCGGC
CATCGAGGCCCAGGATTCGAGGCCCGCTGTGCCATAAAGCAAGCAGCGGTGGAGCCCGAGCCCC
CGGGAGGAGAGCAGCCCACCGGTTCCCAGGCCGGGGTCACCGAAAGCCCAGATTCTGCCTCTTT
CCAGTGGACGTCGACAGCGCCCAGGGGCCAGGAGCGAGCAGCGCGGCCAGGTTTAAACCAGAAA
AATGCAACGAAAGAGTTTGATTTCCCCATACAACTGAATGAAGCCTCCAAACTAATGAAGGCGA
GAAAAAAGGCCTCTGTGTGGAACAAAGTACATCAGGTCATTTCCAGAATGATTGCAGAAAATGA
AAAATACAGACAGAGACTGAAGTGCCACAATTTATCTAGTGACATTCCAGTTACTACAAGATGA
ATGTGAACCTTCCTGTCTTCTCTGGTGAGAGTCCACTGAGATCCCTGAAGAGACCTTTTCATCC
CTGTGTGTCCTGCTCGCTTTAACCCTCGCTGTGCCCTCATTGTCACCTCTACTTACTTACTTCC
TCAACCCAGTGTTTGACACAAAGCACCTCATTAAATATGTTTTTAACTTAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101740	(Get FASTA)	NCBI Sequence Viewer
	NP_001430548	(Get FASTA)	NCBI Sequence Viewer
	XP_006246080	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM04030	(Get FASTA)	NCBI Sequence Viewer
	EDM04031	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033381
	ENSRNOP00000033381.4

RefSeq Acc Id:	NP_001101740 ⟸ NM_001108270
- UniProtKB:	D4AAX2 (UniProtKB/TrEMBL), A6HDC6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPTRSRQRPDGPRLIYVTRFASHRHGVWQLRGLRGFGHRGPGFEARCAIKQAAVEPEPPGGEQ PTGSQAGVTESPDSASFQWTSTAPRGQERAARPGLNQKNATKEFDFPIQLNEASKLMKARKKAS VWNKVHQVISRMIAENEKYRQRLKCHNLSSDIPVTTR hide sequence

RefSeq Acc Id:	XP_006246080 ⟸ XM_006246018
- Peptide Label:	isoform X1
- UniProtKB:	D4AAX2 (UniProtKB/TrEMBL), A6HDC6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPTRSRQRPDGPRLIYVTRFASHRHGVWQLRGLRGFGHRGPGFEARCAIKQAAVEPEPPGGEQ PTGSQAGVTESPDSASFQWTSTAPRGQERAARPGLNQKNATKEFDFPIQLNEASKLMKARKKAS VWNKVHQVISRMIAENEKYRQRLKCHNLSSDIPVTTR hide sequence

Ensembl Acc Id:

ENSRNOP00000033381 ⟸ ENSRNOT00000036447

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAX2-F1-model_v2	AlphaFold	D4AAX2	1-165	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697084

Promoter ID:

EPDNEW_R7608

Type:

initiation region

Name:

RGD1311343_1

Description:

similar to RIKEN cDNA 4930524B15

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	15,960,724 - 15,960,784	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311343	AgrOrtholog
BioCyc Gene	G2FUF-25682	BioCyc
Ensembl Genes	ENSRNOG00000027852	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000036447	ENTREZGENE
	ENSRNOT00000036447.6	UniProtKB/TrEMBL
InterPro	DUF4680	UniProtKB/TrEMBL
KEGG Report	rno:360506	UniProtKB/TrEMBL
NCBI Gene	360506	ENTREZGENE
PANTHER	PTHR38655	UniProtKB/TrEMBL
	SIMILAR TO RIKEN CDNA 4930524B15	UniProtKB/TrEMBL
Pfam	DUF4680	UniProtKB/TrEMBL
PhenoGen	C10h5orf47	PhenoGen
RatGTEx	ENSRNOG00000027852	RatGTEx
UniProt	A6HDC6	ENTREZGENE, UniProtKB/TrEMBL
	D4AAX2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	C10h5orf47	similar to human chromosome 5 open reading frame 47	RGD1311343	similar to RIKEN cDNA 4930524B15	Symbol and Name Changed	1299863	APPROVED
2008-04-30	RGD1311343	similar to RIKEN cDNA 4930524B15	RGD1311343_predicted	similar to RIKEN cDNA 4930524B15 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1311343_predicted	similar to RIKEN cDNA 4930524B15 (predicted)	LOC360506_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360506_predicted	similar to RIKEN cDNA 4930524B15 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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