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Gene: Pigc (phosphatidylinositol glycan anchor biosynthesis, class C) Rattus norvegicus

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Symbol:

Pigc

Name:

phosphatidylinositol glycan anchor biosynthesis, class C

RGD ID:

1311337

Description:

Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex. Human ortholog(s) of this gene implicated in glycosylphosphatidylinositol biosynthesis defect 16. Orthologous to human PIGC (phosphatidylinositol glycan anchor biosynthesis class C); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC364032; phosphatidylinositol glycan, class C; phosphatidylinositol N-acetylglucosaminyltransferase subunit C; phosphatidylinositol-glycan biosynthesis class C protein; PIG-C

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	76,876,894 - 76,879,420 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	76,872,922 - 76,880,224 (+)	Ensembl				GRCr8
mRatBN7.2	13	74,343,619 - 74,346,148 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	74,296,854 - 74,346,211 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	76,913,282 - 76,915,637 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	78,220,480 - 78,222,835 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	75,480,339 - 75,482,694 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	79,886,832 - 79,889,305 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	79,886,832 - 79,889,304 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	84,780,555 - 84,783,014 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	77,664,442 - 77,666,797 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	74,096,747 - 74,099,102 (+)	NCBI		Celera
RGSC_v3.1	13	77,678,629 - 77,680,984 (+)	NCBI
Cytogenetic Map	13	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

glycosylphosphatidylinositol biosynthesis defect 16 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chlorpyrifos (EXP,ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

finasteride (EXP)

flutamide (EXP)

gentamycin (EXP)

hydrogen peroxide (ISO)

maneb (ISO)

nefazodone (EXP)

nicotine (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

potassium chromate (ISO)

silicon dioxide (ISO)

simvastatin (ISO)

sodium arsenite (ISO)

sulindac (EXP)

tamoxifen (ISO)

testosterone (ISO)

theophylline (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

GPI anchor biosynthetic process (IEA,ISO,ISS)

Cellular Component

endoplasmic reticulum membrane (IEA,ISO)

glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (IBA,IEA,ISO,ISS)

membrane (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

glycosylphosphatidylinositol anchor biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10944123	PMID:12477932	PMID:15489334	PMID:27694521

Genomics

Comparative Map Data

Pigc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	76,876,894 - 76,879,420 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	76,872,922 - 76,880,224 (+)	Ensembl				GRCr8
mRatBN7.2	13	74,343,619 - 74,346,148 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	74,296,854 - 74,346,211 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	76,913,282 - 76,915,637 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	78,220,480 - 78,222,835 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	75,480,339 - 75,482,694 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	79,886,832 - 79,889,305 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	79,886,832 - 79,889,304 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	84,780,555 - 84,783,014 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	77,664,442 - 77,666,797 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	74,096,747 - 74,099,102 (+)	NCBI		Celera
RGSC_v3.1	13	77,678,629 - 77,680,984 (+)	NCBI
Cytogenetic Map	13	q22	NCBI

PIGC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	172,441,457 - 172,444,069 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	172,370,189 - 172,444,148 (-)	Ensembl			hg38	GRCh38
GRCh37	1	172,410,597 - 172,413,209 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	170,677,220 - 170,679,853 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	169,142,254 - 169,144,887	NCBI
Celera	1	145,520,042 - 145,522,675 (-)	NCBI		Celera
Cytogenetic Map	1	q24.3	NCBI
HuRef	1	143,634,549 - 143,637,182 (-)	NCBI		HuRef
CHM1_1	1	173,832,716 - 173,835,349 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	171,798,151 - 171,800,763 (-)	NCBI		T2T-CHM13v2.0

Pigc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	161,796,757 - 161,801,029 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	161,796,755 - 161,801,004 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	161,969,188 - 161,973,460 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	161,969,186 - 161,973,435 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	163,899,319 - 163,903,566 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	163,805,865 - 163,810,112 (+)	NCBI		MGSCv36	mm8
Celera	1	164,424,173 - 164,428,420 (+)	NCBI		Celera
Cytogenetic Map	1	H2.1	NCBI
cM Map	1	69.95	NCBI

Pigc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	12,891,187 - 12,893,935 (-)	Ensembl
ChiLan1.0	NW_004955406	12,891,187 - 12,893,935 (-)	NCBI	ChiLan1.0	ChiLan1.0

PIGC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	77,301,941 - 77,304,688 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	76,982,114 - 76,984,790 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	147,891,867 - 147,942,057 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	151,601,116 - 151,652,039 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	151,649,468 - 151,650,361 (-)	Ensembl			panPan2	panpan1.1

PIGC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	26,548,894 - 26,551,702 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	26,550,524 - 26,551,417 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	26,079,654 - 26,082,476 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	26,299,949 - 26,302,764 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	26,300,015 - 26,302,740 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	26,210,541 - 26,213,364 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	26,281,110 - 26,283,930 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	26,431,378 - 26,434,197 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pigc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	97,115,826 - 97,118,184 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	14,962,613 - 14,964,861 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	14,962,572 - 14,964,929 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PIGC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	114,824,802 - 114,827,413 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	114,824,795 - 114,827,731 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	126,420,136 - 126,423,071 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PIGC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	56,711,459 - 56,714,109 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	56,712,941 - 56,713,834 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	58,317,307 - 58,320,157 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pigc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	9,234,242 - 9,236,987 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	9,234,218 - 9,236,991 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pigc
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	41,269,541 - 41,272,034 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pigc
27 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	65
Count of miRNA genes:	59
Interacting mature miRNAs:	60
Transcripts:	ENSRNOT00000035558
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH128185

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	74,345,930 - 74,346,126 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	79,889,088 - 79,889,283	NCBI	Rnor6.0
Rnor_5.0	13	84,782,797 - 84,782,992	UniSTS	Rnor5.0
RGSC_v3.4	13	77,666,581 - 77,666,776	UniSTS	RGSC3.4
Celera	13	74,098,886 - 74,099,081	UniSTS
RH 3.4 Map	13	452.9	UniSTS
Cytogenetic Map	13	q22	UniSTS

RH138688

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	74,345,930 - 74,346,051 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	79,889,088 - 79,889,208	NCBI	Rnor6.0
Rnor_5.0	13	84,782,797 - 84,782,917	UniSTS	Rnor5.0
RGSC_v3.4	13	77,666,581 - 77,666,701	UniSTS	RGSC3.4
Celera	13	74,098,886 - 74,099,006	UniSTS
RH 3.4 Map	13	452.7	UniSTS
Cytogenetic Map	13	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC144674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035558 ⟹ ENSRNOP00000035922

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	76,878,041 - 76,880,224 (+)	Ensembl
mRatBN7.2 Ensembl	13	74,343,900 - 74,346,211 (+)	Ensembl
Rnor_6.0 Ensembl	13	79,886,949 - 79,889,304 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076417 ⟹ ENSRNOP00000068091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	76,872,922 - 76,880,224 (+)	Ensembl
mRatBN7.2 Ensembl	13	74,296,854 - 74,346,211 (+)	Ensembl
Rnor_6.0 Ensembl	13	79,886,984 - 79,888,534 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077069 ⟹ ENSRNOP00000068000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	74,340,725 - 74,346,211 (+)	Ensembl
Rnor_6.0 Ensembl	13	79,886,832 - 79,888,420 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105154 ⟹ ENSRNOP00000094482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	76,872,922 - 76,880,224 (+)	Ensembl
mRatBN7.2 Ensembl	13	74,343,043 - 74,346,211 (+)	Ensembl

RefSeq Acc Id:

NM_001012207 ⟹ NP_001012207

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	76,877,065 - 76,879,420 (+)	NCBI
mRatBN7.2	13	74,343,792 - 74,346,147 (+)	NCBI
Rnor_6.0	13	79,886,949 - 79,889,304 (+)	NCBI
Rnor_5.0	13	84,780,555 - 84,783,014 (+)	NCBI
RGSC_v3.4	13	77,664,442 - 77,666,797 (+)	RGD
Celera	13	74,096,747 - 74,099,102 (+)	RGD

Sequence:

show sequence

GGCCTTTCCGGCTGAGCCAAGGCTGGGAGAGGGGCGGCGGCGGGCAGGGCAGGCCGGCTTGGCT
TAGCCTGGCCCGAAGACTTTGTAAACAAGGAAAGTTCTGTATGCTATCAGCGTGGCATTTCTGA
GAGGTCTTAATCTACAACTTTATCAAGAACTAGAATCCTGTGGGCATCTTTGAGGGAGATTGAG
CCCGCCTGGATTTCAGGAAAGGATGAGATAATGTGTGCTCAACATGTAGCGGACACCTCCGAAG
TCAAGTGGCAGAAGGTTTTATATGAGCGGCAGCCATTCCCTGATAACTATGTTGACCAAAGGTT
CCTGGAGGAGCTCCGGAAAAACATCTATGCCCGGAAATACCAATACTGGGCTGTGGTATTTGAG
TCCAGTGTGGTGATACAACAGCTGTGCAGTGTCTGTGTCTTTGTAGTCATTTGGTGGTACATGG
ACGAGGGTCTTCTGGCTCCCCAGTGGCTTTTTGGGACTGGACTGGCATCGTCCTTGGTTGGGTA
TGTGTTATTTGATCTTATTGATGGAGGTGATGGACGGAAGAAGAGTGGGCGGACCCGGTGGGCC
GACCTGAAGAGTACTCTGGTCTTCATTACTTTCACGTACGGTTTCTCACCAGTGCTAAAGACCC
TGACAGAGTCCGTCAGTACGGACACCATCTACGCCATGTCCGTTTTTATGCTGTTAGGCCATCT
CATCTTCTTTGATTACGGTGCCAATGCTGCTATTGTATCTAGCACACTGTCCTTGAATATGGCC
ATCTTTGCTTCTGTTTGCCTGGCCTCACGCCTCCCCCGGTCACTACATGCCTTCATCATGGTGA
CATTTGCCATCCAGATCTTTGCACTGTGGCCCATGTTACAGAAGAAACTGAAGGCGTATACCCC
AAGAAGCTATGTCGGGGTCACCCTGCTTTTTGCCTTTTCAGCTTTTGGAGGTCTTTTGTCCATT
AGTGGTGTGGGAGCCATACTCTTTGCTCTTCTGCTGTTTTCCATTTCCTGTCTCTGCCCTTACT
ATCTCATTCACCTGCAGCTTTTTAAGGAAAATATTCATGGGCCTTGGGATGAGGCAGAAATCAA
GGAAGACTTGTCCAGGTTCCTTAGCTAACCTAGGGACCTGCATTTCATTATTAAGAAAAGTTAA
AAGACTTAGAACCTAACCAGTGTAACATTTAAAGGCAGGGTTCCACTCTCAAAGCAGCAGGCTG
ATCTGGGTGGTAGAGCTGAGATCAGAAGAGTTTAACCAAGGGTTTAGGGGAAGGTGTTTGCCCT
TCAGTTTACCTTGTGACTTAAAAAGCTTTCTGGTGCTGTTATGAATTATTGTCCTTTATTCCCT
CTAACAATGATGTGATGTGGGTTCTGCTTATTAAAAGAGTAACATCTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250182 ⟹ XP_006250244

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	76,876,894 - 76,879,420 (+)	NCBI
mRatBN7.2	13	74,343,680 - 74,346,148 (+)	NCBI
Rnor_6.0	13	79,886,832 - 79,889,305 (+)	NCBI
Rnor_5.0	13	84,780,555 - 84,783,014 (+)	NCBI

Sequence:

show sequence

CACAGTAGTCCCCTCCAACCCCGCGTCCCGGATGTAGAAGTAGCAGGGCTGCTGCTCTTCTCGG
TCGTACACCCCCTAAAGAGCTGGGGCAGGTGGGTTCCGGCGTCCTTCGCTTCGGGCCTTTCCGG
CTGAGCCAAGGCTGGGAGAGGGGCGGCGGCGGGCAGGGCAGGCCGGCTTGGAATTTAGTTGCGT
TGTCCTGATTCACGGAACAAACTCATCTATTGCAGGCTTAGCCTGGCCCGAAGACTTTGTAAAC
AAGGAAAGTTCTGTATGCTATCAGCGTGGCATTTCTGAGAGGTCTTAATCTACAACTTTATCAA
GAACTAGAATCCTGTGGGCATCTTTGAGGGAGATTGAGCCCGCCTGGATTTCAGGAAAGGATGA
GATAATGTGTGCTCAACATGTAGCGGACACCTCCGAAGTCAAGTGGCAGAAGGTTTTATATGAG
CGGCAGCCATTCCCTGATAACTATGTTGACCAAAGGTTCCTGGAGGAGCTCCGGAAAAACATCT
ATGCCCGGAAATACCAATACTGGGCTGTGGTATTTGAGTCCAGTGTGGTGATACAACAGCTGTG
CAGTGTCTGTGTCTTTGTAGTCATTTGGTGGTACATGGACGAGGGTCTTCTGGCTCCCCAGTGG
CTTTTTGGGACTGGACTGGCATCGTCCTTGGTTGGGTATGTGTTATTTGATCTTATTGATGGAG
GTGATGGACGGAAGAAGAGTGGGCGGACCCGGTGGGCCGACCTGAAGAGTACTCTGGTCTTCAT
TACTTTCACGTACGGTTTCTCACCAGTGCTAAAGACCCTGACAGAGTCCGTCAGTACGGACACC
ATCTACGCCATGTCCGTTTTTATGCTGTTAGGCCATCTCATCTTCTTTGATTACGGTGCCAATG
CTGCTATTGTATCTAGCACACTGTCCTTGAATATGGCCATCTTTGCTTCTGTTTGCCTGGCCTC
ACGCCTCCCCCGGTCACTACATGCCTTCATCATGGTGACATTTGCCATCCAGATCTTTGCACTG
TGGCCCATGTTACAGAAGAAACTGAAGGCGTATACCCCAAGAAGCTATGTCGGGGTCACCCTGC
TTTTTGCCTTTTCAGCTTTTGGAGGTCTTTTGTCCATTAGTGGTGTGGGAGCCATACTCTTTGC
TCTTCTGCTGTTTTCCATTTCCTGTCTCTGCCCTTACTATCTCATTCACCTGCAGCTTTTTAAG
GAAAATATTCATGGGCCTTGGGATGAGGCAGAAATCAAGGAAGACTTGTCCAGGTTCCTTAGCT
AACCTAGGGACCTGCATTTCATTATTAAGAAAAGTTAAAAGACTTAGAACCTAACCAGTGTAAC
ATTTAAAGGCAGGGTTCCACTCTCAAAGCAGCAGGCTGATCTGGGTGGTAGAGCTGAGATCAGA
AGAGTTTAACCAAGGGTTTAGGGGAAGGTGTTTGCCCTTCAGTTTACCTTGTGACTTAAAAAGC
TTTCTGGTGCTGTTATGAATTATTGTCCTTTATTCCCTCTAACAATGATGTGATGTGGGTTCTG
CTTATTAAAAGAGTAACATCTAT

hide sequence

RefSeq Acc Id:

XM_006250183 ⟹ XP_006250245

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	76,876,901 - 76,879,420 (+)	NCBI
mRatBN7.2	13	74,343,619 - 74,346,148 (+)	NCBI
Rnor_6.0	13	79,886,838 - 79,889,305 (+)	NCBI
Rnor_5.0	13	84,780,555 - 84,783,014 (+)	NCBI

Sequence:

show sequence

AGTCCCCTCCAACCCCGCGTCCCGGATGTAGAAGTAGCAGGGCTGCTGCTCTTCTCGGTCGTAC
ACCCCCTAAAGAGCTGGGGCAGGAATTTAGTTGCGTTGTCCTGATTCACGGAACAAACTCATCT
ATTGCAGGCTTAGCCTGGCCCGAAGACTTTGTAAACAAGGAAAGTTCTGTATGCTATCAGCGTG
GCATTTCTGAGAGGTCTTAATCTACAACTTTATCAAGAACTAGAATCCTGTGGGCATCTTTGAG
GGAGATTGAGCCCGCCTGGATTTCAGGAAAGGATGAGATAATGTGTGCTCAACATGTAGCGGAC
ACCTCCGAAGTCAAGTGGCAGAAGGTTTTATATGAGCGGCAGCCATTCCCTGATAACTATGTTG
ACCAAAGGTTCCTGGAGGAGCTCCGGAAAAACATCTATGCCCGGAAATACCAATACTGGGCTGT
GGTATTTGAGTCCAGTGTGGTGATACAACAGCTGTGCAGTGTCTGTGTCTTTGTAGTCATTTGG
TGGTACATGGACGAGGGTCTTCTGGCTCCCCAGTGGCTTTTTGGGACTGGACTGGCATCGTCCT
TGGTTGGGTATGTGTTATTTGATCTTATTGATGGAGGTGATGGACGGAAGAAGAGTGGGCGGAC
CCGGTGGGCCGACCTGAAGAGTACTCTGGTCTTCATTACTTTCACGTACGGTTTCTCACCAGTG
CTAAAGACCCTGACAGAGTCCGTCAGTACGGACACCATCTACGCCATGTCCGTTTTTATGCTGT
TAGGCCATCTCATCTTCTTTGATTACGGTGCCAATGCTGCTATTGTATCTAGCACACTGTCCTT
GAATATGGCCATCTTTGCTTCTGTTTGCCTGGCCTCACGCCTCCCCCGGTCACTACATGCCTTC
ATCATGGTGACATTTGCCATCCAGATCTTTGCACTGTGGCCCATGTTACAGAAGAAACTGAAGG
CGTATACCCCAAGAAGCTATGTCGGGGTCACCCTGCTTTTTGCCTTTTCAGCTTTTGGAGGTCT
TTTGTCCATTAGTGGTGTGGGAGCCATACTCTTTGCTCTTCTGCTGTTTTCCATTTCCTGTCTC
TGCCCTTACTATCTCATTCACCTGCAGCTTTTTAAGGAAAATATTCATGGGCCTTGGGATGAGG
CAGAAATCAAGGAAGACTTGTCCAGGTTCCTTAGCTAACCTAGGGACCTGCATTTCATTATTAA
GAAAAGTTAAAAGACTTAGAACCTAACCAGTGTAACATTTAAAGGCAGGGTTCCACTCTCAAAG
CAGCAGGCTGATCTGGGTGGTAGAGCTGAGATCAGAAGAGTTTAACCAAGGGTTTAGGGGAAGG
TGTTTGCCCTTCAGTTTACCTTGTGACTTAAAAAGCTTTCTGGTGCTGTTATGAATTATTGTCC
TTTATTCCCTCTAACAATGATGTGATGTGGGTTCTGCTTATTAAAAGAGTAACATCTAT

hide sequence

RefSeq Acc Id:

XM_008769665 ⟹ XP_008767887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	76,877,055 - 76,879,420 (+)	NCBI
mRatBN7.2	13	74,343,865 - 74,346,148 (+)	NCBI
Rnor_6.0	13	79,887,037 - 79,889,305 (+)	NCBI

Sequence:

show sequence

GCTCCGTACCGCGGGTCTTTCTGATCCAGAGGTCCCAGTGCATGAAGGCCGATCCCAGGGTGTC
CGGCTTTTAAAGTAAAGGTCTATCCTGGCCTCTTATGAAATAAAGAAGGAATTTAGTTGCGTTG
TCCTGATTCACGGAACAAACTCATCTATTGCAGGCTTAGCCTGGCCCGAAGACTTTGTAAACAA
GGAAAGTTCTGTATGCTATCAGCGTGGCATTTCTGAGAGGTCTTAATCTACAACTTTATCAAGA
ACTAGAATCCTGTGGGCATCTTTGAGGGAGATTGAGCCCGCCTGGATTTCAGGAAAGGATGAGA
TAATGTGTGCTCAACATGTAGCGGACACCTCCGAAGTCAAGTGGCAGAAGGTTTTATATGAGCG
GCAGCCATTCCCTGATAACTATGTTGACCAAAGGTTCCTGGAGGAGCTCCGGAAAAACATCTAT
GCCCGGAAATACCAATACTGGGCTGTGGTATTTGAGTCCAGTGTGGTGATACAACAGCTGTGCA
GTGTCTGTGTCTTTGTAGTCATTTGGTGGTACATGGACGAGGGTCTTCTGGCTCCCCAGTGGCT
TTTTGGGACTGGACTGGCATCGTCCTTGGTTGGGTATGTGTTATTTGATCTTATTGATGGAGGT
GATGGACGGAAGAAGAGTGGGCGGACCCGGTGGGCCGACCTGAAGAGTACTCTGGTCTTCATTA
CTTTCACGTACGGTTTCTCACCAGTGCTAAAGACCCTGACAGAGTCCGTCAGTACGGACACCAT
CTACGCCATGTCCGTTTTTATGCTGTTAGGCCATCTCATCTTCTTTGATTACGGTGCCAATGCT
GCTATTGTATCTAGCACACTGTCCTTGAATATGGCCATCTTTGCTTCTGTTTGCCTGGCCTCAC
GCCTCCCCCGGTCACTACATGCCTTCATCATGGTGACATTTGCCATCCAGATCTTTGCACTGTG
GCCCATGTTACAGAAGAAACTGAAGGCGTATACCCCAAGAAGCTATGTCGGGGTCACCCTGCTT
TTTGCCTTTTCAGCTTTTGGAGGTCTTTTGTCCATTAGTGGTGTGGGAGCCATACTCTTTGCTC
TTCTGCTGTTTTCCATTTCCTGTCTCTGCCCTTACTATCTCATTCACCTGCAGCTTTTTAAGGA
AAATATTCATGGGCCTTGGGATGAGGCAGAAATCAAGGAAGACTTGTCCAGGTTCCTTAGCTAA
CCTAGGGACCTGCATTTCATTATTAAGAAAAGTTAAAAGACTTAGAACCTAACCAGTGTAACAT
TTAAAGGCAGGGTTCCACTCTCAAAGCAGCAGGCTGATCTGGGTGGTAGAGCTGAGATCAGAAG
AGTTTAACCAAGGGTTTAGGGGAAGGTGTTTGCCCTTCAGTTTACCTTGTGACTTAAAAAGCTT
TCTGGTGCTGTTATGAATTATTGTCCTTTATTCCCTCTAACAATGATGTGATGTGGGTTCTGCT
TATTAAAAGAGTAACATCTAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001012207	(Get FASTA)	NCBI Sequence Viewer
	NP_001416759	(Get FASTA)	NCBI Sequence Viewer
	NP_001416760	(Get FASTA)	NCBI Sequence Viewer
	NP_001416761	(Get FASTA)	NCBI Sequence Viewer
	XP_006250244	(Get FASTA)	NCBI Sequence Viewer
	XP_006250245	(Get FASTA)	NCBI Sequence Viewer
	XP_008767887	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87080	(Get FASTA)	NCBI Sequence Viewer
	EDM09410	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035922
	ENSRNOP00000035922.3
	ENSRNOP00000068000.2
	ENSRNOP00000068091.2
	ENSRNOP00000094482
	ENSRNOP00000094482.1
GenBank Protein	Q5PQQ4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012207 ⟸ NM_001012207

- UniProtKB:

Q5PQQ4 (UniProtKB/Swiss-Prot), A6ID87 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCAQHVADTSEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCS
VCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKSTLVFIT
FTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASVCLASR
LPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAFGGLLSISGVGAILFAL
LLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLSRFLS

hide sequence

RefSeq Acc Id:

XP_006250245 ⟸ XM_006250183

- Peptide Label:

isoform X1

- Sequence:

show sequence

MCAQHVADTSEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCS
VCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKSTLVFIT
FTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASVCLASR
LPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAFGGLLSISGVGAILFAL
LLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLSRFLS

hide sequence

RefSeq Acc Id:

XP_006250244 ⟸ XM_006250182

- Peptide Label:

isoform X1

- Sequence:

show sequence

MCAQHVADTSEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCS
VCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKSTLVFIT
FTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASVCLASR
LPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAFGGLLSISGVGAILFAL
LLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLSRFLS

hide sequence

RefSeq Acc Id:

XP_008767887 ⟸ XM_008769665

- Peptide Label:

isoform X1

- Sequence:

show sequence

MCAQHVADTSEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCS
VCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKSTLVFIT
FTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASVCLASR
LPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAFGGLLSISGVGAILFAL
LLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLSRFLS

hide sequence

Ensembl Acc Id:

ENSRNOP00000068000 ⟸ ENSRNOT00000077069

Ensembl Acc Id:

ENSRNOP00000035922 ⟸ ENSRNOT00000035558

Ensembl Acc Id:

ENSRNOP00000068091 ⟸ ENSRNOT00000076417

Ensembl Acc Id:

ENSRNOP00000094482 ⟸ ENSRNOT00000105154

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQQ4-F1-model_v2	AlphaFold	Q5PQQ4	1-297	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698936

Promoter ID:

EPDNEW_R9461

Type:

multiple initiation site

Name:

Pigc_1

Description:

phosphatidylinositol glycan anchor biosynthesis, class C

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	79,886,936 - 79,886,996	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311337	AgrOrtholog
BioCyc Gene	G2FUF-17684	BioCyc
Ensembl Genes	ENSRNOG00000026497	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000035558	ENTREZGENE
	ENSRNOT00000035558.5	UniProtKB/Swiss-Prot
	ENSRNOT00000076417.2	UniProtKB/Swiss-Prot
	ENSRNOT00000077069.2	UniProtKB/Swiss-Prot
	ENSRNOT00000105154	ENTREZGENE
	ENSRNOT00000105154.1	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7189037	IMAGE-MGC_LOAD
InterPro	Plno_GlcNAc_GPI2	UniProtKB/Swiss-Prot
KEGG Report	rno:364032	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94541	IMAGE-MGC_LOAD
NCBI Gene	364032	ENTREZGENE
PANTHER	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT C	UniProtKB/Swiss-Prot
	PTHR12982	UniProtKB/Swiss-Prot
Pfam	GPI2	UniProtKB/Swiss-Prot
PhenoGen	Pigc	PhenoGen
PIRSF	GPI2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000026497	RatGTEx
UniProt	A0A096MJD7_RAT	UniProtKB/TrEMBL
	A6ID87	ENTREZGENE, UniProtKB/TrEMBL
	PIGC_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Pigc	phosphatidylinositol glycan anchor biosynthesis, class C	Pigc	phosphatidylinositol glycan, class C	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Pigc	phosphatidylinositol glycan, class C	Pigc_predicted	phosphatidylinositol glycan, class C (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Pigc_predicted	phosphatidylinositol glycan, class C (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)