Taf5 (TATA-box binding protein associated factor 5)

Advanced Search (OLGA)

Gene: Taf5 (TATA-box binding protein associated factor 5) Rattus norvegicus

Analyze

Symbol:

Taf5

Name:

TATA-box binding protein associated factor 5

RGD ID:

1311332

Description:

Predicted to enable DNA binding activity; identical protein binding activity; and promoter-specific chromatin binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly; mRNA transcription by RNA polymerase II; and positive regulation of transcription initiation by RNA polymerase II. Predicted to be located in actin cytoskeleton; chromatin; and nucleoplasm. Predicted to be part of SAGA complex; transcription factor TFIID complex; and transcription factor TFTC complex. Predicted to be active in nucleus. Orthologous to human TAF5 (TATA-box binding protein associated factor 5); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC294018; TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor; transcription initiation factor TFIID subunit 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TAF5 (TATA-box binding protein associated factor 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Taf5 (TATA-box binding protein associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Taf5 (TATA-box binding protein associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TAF5 (TATA-box binding protein associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TAF5 (TATA-box binding protein associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Taf5 (TATA-box binding protein associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TAF5 (TATA-box binding protein associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TAF5 (TATA-box binding protein associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Taf5 (TATA-box binding protein associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TAF5 (TATA-box binding protein associated factor 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Taf5 (TATA-box binding protein associated factor 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	taf5 (TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Taf5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TAF5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	taf-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	taf5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	255,899,774 - 255,915,259 (+)	NCBI		GRCr8
mRatBN7.2	1	245,958,428 - 245,973,914 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	245,958,428 - 245,973,914 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	254,084,653 - 254,100,288 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	260,777,997 - 260,793,486 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	253,427,369 - 253,442,983 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	266,844,480 - 266,859,965 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	266,844,480 - 266,859,965 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	274,274,891 - 274,290,376 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	252,391,049 - 252,406,534 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	252,655,620 - 252,671,118 (+)	NCBI
Celera	1	241,730,086 - 241,745,569 (+)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

desmoplastic/nodular medulloblastoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

Benoxacor (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

chlorpyrifos (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

disodium selenite (ISO)

Enterolactone (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

fluoranthene (ISO)

formaldehyde (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

methotrexate (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

quercetin (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

topotecan (EXP)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

DNA-templated transcription initiation (ISO)

mRNA transcription by RNA polymerase II (ISO)

positive regulation of transcription initiation by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (ISO)

RNA polymerase II preinitiation complex assembly (ISO)

transcription initiation at RNA polymerase II promoter (IBA,ISO)

Cellular Component

actin cytoskeleton (IEA,ISO)

chromatin (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (ISO)

SAGA complex (IBA)

transcription factor TFIID complex (IBA,ISO)

transcription factor TFTC complex (ISO)

Molecular Function

DNA binding (ISO)

identical protein binding (ISO)

promoter-specific chromatin binding (ISO)

protein binding (ISO)

RNA polymerase II general transcription initiation factor activity (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription initiation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Structural bioinformatics of the general transcription factor TFIID.	Malkowska M, etal., Biochimie. 2013 Apr;95(4):680-91. doi: 10.1016/j.biochi.2012.10.024. Epub 2012 Nov 9.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:9045704	PMID:9603525	PMID:10373431	PMID:14580349	PMID:15637059	PMID:17227857	PMID:17242199	PMID:17996705	PMID:18722179	PMID:22323595	PMID:24289924

Genomics

Comparative Map Data

Taf5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	255,899,774 - 255,915,259 (+)	NCBI		GRCr8
mRatBN7.2	1	245,958,428 - 245,973,914 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	245,958,428 - 245,973,914 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	254,084,653 - 254,100,288 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	260,777,997 - 260,793,486 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	253,427,369 - 253,442,983 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	266,844,480 - 266,859,965 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	266,844,480 - 266,859,965 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	274,274,891 - 274,290,376 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	252,391,049 - 252,406,534 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	252,655,620 - 252,671,118 (+)	NCBI
Celera	1	241,730,086 - 241,745,569 (+)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

TAF5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	103,367,976 - 103,389,065 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	103,367,966 - 103,389,065 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	105,127,733 - 105,148,822 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	105,117,714 - 105,138,812 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	105,117,713 - 105,138,810	NCBI
Celera	10	98,867,655 - 98,888,755 (+)	NCBI		Celera
Cytogenetic Map	10	q24.33	NCBI
HuRef	10	98,758,844 - 98,779,615 (+)	NCBI		HuRef
CHM1_1	10	105,411,841 - 105,432,941 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	104,255,272 - 104,276,364 (+)	NCBI		T2T-CHM13v2.0

Taf5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	47,056,187 - 47,071,918 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	47,056,185 - 47,071,918 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	47,067,748 - 47,083,479 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	47,067,746 - 47,083,479 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	47,142,238 - 47,157,969 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	47,121,059 - 47,136,779 (+)	NCBI		MGSCv36	mm8
Celera	19	47,836,757 - 47,852,520 (+)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	39.19	NCBI

Taf5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	7,160,022 - 7,175,608 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955485	7,159,199 - 7,176,269 (-)	NCBI	ChiLan1.0	ChiLan1.0

TAF5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	115,251,919 - 115,273,526 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	115,257,250 - 115,278,855 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	99,965,537 - 99,986,955 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	103,426,318 - 103,447,883 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	103,426,334 - 103,447,046 (+)	Ensembl	panpan1.1		panPan2

TAF5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	15,747,102 - 15,761,744 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	15,747,120 - 15,760,901 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	15,919,071 - 15,935,056 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	16,223,339 - 16,239,322 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	16,223,345 - 16,237,982 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	15,772,401 - 15,788,363 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	15,800,134 - 15,816,104 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	15,938,791 - 15,954,777 (+)	NCBI		UU_Cfam_GSD_1.0

Taf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	31,079,820 - 31,096,636 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936600	2,679,807 - 2,700,274 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936600	2,683,045 - 2,700,272 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAF5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	114,304,557 - 114,321,626 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	114,304,563 - 114,321,624 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TAF5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	96,411,690 - 96,432,668 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	57,528,260 - 57,550,431 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Taf5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624831	2,609,819 - 2,625,182 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624831	2,608,972 - 2,625,036 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Taf5
69 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	471
Count of miRNA genes:	238
Interacting mature miRNAs:	306
Transcripts:	ENSRNOT00000027482
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
631690	Scl5	Serum cholesterol level QTL 5	2.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	236125214	260522016	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	201554356	246554356	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	216255568	260522016	Rat
1600392	Bw123	Body weight QTL 123		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	223201027	260522016	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	195804352	257091168	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	238699859	259647894	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	237147813	260522016	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	206081677	251081677	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	201554356	246554356	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	228581588	259647894	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	224054293	260122809	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	225126575	260522016	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	191019702	246062233	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	224054293	260122809	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	221264111	259647894	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	201554356	246554356	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	213707201	252085212	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	201554356	246554356	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	224569538	260122809	Rat
734768	Niddm59	Non-insulin dependent diabetes mellitus QTL 59			body mass (VT:0001259)	body weight (CMO:0000012)	1	213843987	258843987	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	218753816	256448513	Rat
1358890	Bp259	Blood pressure QTL 259	3.06		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	210702053	260522016	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	199050459	259647894	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	214647894	259647894	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	214647894	259647894	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	222363780	260522016	Rat
1357399	Bw45	Body weight QTL 45	3.05		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	1	206329708	251329708	Rat
1357404	Bw42	Body weight QTL 42	4.49	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	206329708	251329708	Rat
10053715	Scort24	Serum corticosterone level QTL 24	2.13	0.0088	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	221414816	260522016	Rat
10059587	Bw173	Body weight QTL 173	3.23	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	1	202069611	247069611	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	223262787	260522016	Rat
1598839	Rf56	Renal function QTL 56			renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	245907761	257976495	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	232156370	259647894	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	233948574	260522016	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	216255568	260522016	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233190394	258625266	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	218748008	257976495	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	201554356	246554356	Rat

Markers in Region

RH128718

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	245,973,628 - 245,973,846 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	266,859,680 - 266,859,897	NCBI	Rnor6.0
Rnor_5.0	1	274,290,091 - 274,290,308	UniSTS	Rnor5.0
RGSC_v3.4	1	252,406,249 - 252,406,466	UniSTS	RGSC3.4
Celera	1	241,745,284 - 241,745,501	UniSTS
RH 3.4 Map	1	1631.8	UniSTS
Cytogenetic Map	1	q54	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027482 ⟹ ENSRNOP00000027482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	245,958,428 - 245,973,914 (+)	Ensembl
Rnor_6.0 Ensembl	1	266,844,480 - 266,859,965 (+)	Ensembl

RefSeq Acc Id:

NM_001106365 ⟹ NP_001099835

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,899,774 - 255,915,259 (+)	NCBI
mRatBN7.2	1	245,958,428 - 245,973,914 (+)	NCBI
Rnor_6.0	1	266,844,480 - 266,859,965 (+)	NCBI
Rnor_5.0	1	274,274,891 - 274,290,376 (+)	NCBI
RGSC_v3.4	1	252,391,049 - 252,406,534 (+)	RGD
Celera	1	241,730,086 - 241,745,569 (+)	RGD

Sequence:

show sequence

CGCGAGGTGGCTCAGCCGCAAGATGGCGGCGCTGGCGGAGGAGCAGACGGAGGTGGCGGTCAAG
CTAGAGTCTGAGGGACCGCCAACGCTGCTACCTCCGCAGGCTGGCGACGGCGCAGGCGAGGGTA
GCGGTGGCACTCCTAACAACGGCCCCAACGGCGGCGGCGGGAATGTGGCGGCGGCGGCCGGTGG
GGACGGCGGGACCCCCAAACCAGTGGTGGCTGTTTCTGCCGCTGCCCCGGCGGGGGCGGCCCCG
GTGCCCGCCGCTCCCGCGGAGGCCGGCGCTCCTCACGACCGACAGACTCTTCTGGCTGTGCTGC
AGTTCCTACGGCAGAGCAACCTCCGCGAGGCCGAAGAGGCACTGCGCCGTGAGGCCCGGCTGCT
GGAGGAGGCGGTGGCGGGCTCCGGAGCTCCGGGAGAGTTGGACGGGGCTGGCGCGGAGGCGGCT
AGTGCGCTTCTCAGCCGGGTCACCGCTTCAGTTCCCGGCTCTGCGGCCCCCGACACTCCGGGAG
CCGGCGCTTCGGTGACCTCAGTGTTCTCAGGTTCAGCCTCAGGTCCTGCGGCTCCGGGAAAGGT
TGCAAGTGTAGCTGTGGAAGACCAGCCAGATGTCAGTGCTGTCTTGTCGGCCTACAACCAACAA
GGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGG
ACTGCCATCGAGCAGAATTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCT
AGTTTATAATCAACATGAAAGTGAAGCAAAATCATTCTTTGAGAAGTTCCACGGAGATCAGGAA
TGTTATTACCAGGATGACCTACGAGTATTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGA
ATGAGACCATGCTGGACTTTCGGACAAGTAAATTTGTTCTTCGCATTTCCCGTGACTCGTACCA
ACTCTTGAAGCGGCATCTTCAGGAGAAACAGAACAATCAGATATGGAACATAGTTCAGGAGCAC
CTCTACATCGACATCTTTGACGGGATGCCCCGCAGTAAGCAGCAGATAGACGCCATGGTGGGAA
GCCTGGCAGGCGAGGCTAAGCGAGAAGCAAACAAATCAAAGGTATTTTTTGGTTTATTAAAAGA
ACCGGAAATTGAGGTGCCTTTGGATGATGAGGATGAAGAAGGAGAAAACGAAGAGGGGAAACCT
AAAAAGAAGAAGCCTAAAAAGGATAGTATTGGCTCTAAAAGCAAGAAACAAGATCCCAATGCTC
CACCCCAAAACAGAATCCCCCTTCCCGAGTTGAAAGATTCAGACAAACTGGACAAAATAATGAA
TATGAAGGAAACTACCAAACGAGTGCGCCTTGGGCCTGACTGTTTACCCTCCATTTGTTTCTAT
ACATTCCTTAATGCGTACCAGGGCCTCACTGCAGTGGATGTCACTGATGATTCTAGCCTGATTG
CTGGAGGTTTTGCTGATTCAACCGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGT
CAAACAAGCATCAGATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATG
GATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCA
GCTTCAGTCCGGATAGGAACTACCTACTCTCCTCTTCAGAGGATGGAACCGTTAGACTCTGGAG
CCTGCAGACTTTCACTTGCTTAGTTGGATATAAAGGGCACAACTACCCAGTGTGGGACACACAG
TTTTCTCCATATGGATATTATTTCGTGTCAGGAGGCCATGACCGCGTAGCTCGGCTTTGGGCTA
CAGATCACTATCAGCCTTTAAGGATATTCGCTGGCCATCTTGCTGATGTGAATTGCACTAGATT
TCATCCAAATTCCAACTATGTTGCTACGGGCTCTGCAGACAGAACCGTGCGGCTCTGGGACGTC
CTCAATGGTAACTGTGTAAGGATCTTCACTGGACACAAGGGACCAATTCATTCCTTGACATTTT
CTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATCGG
ACATGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGT
AGAGATGGTGAGATTTTGGCATCAGGTTCGATGGATAACACAGTTCGGTTATGGGATGCCATCA
AAGCATTTGAAGATTTAGAAACTGATGACTTTACTACAGCCACTGGGCATATAAATCTACCTGA
GAATTCCCAGGAGTTACTGTTGGGTACATACATGACCAAATCAACACCAGTCGTACACCTACAT
TTTACAAGAAGAAACTTGGTTCTAGCTGCAGGAGCTTACAGTCCGCAATAAACCAACGGTATTA
GAGACCTTTTGGAAGCTACTGTTTGGAAAAGGGAGACTAAAAGCAAATACCTCAGTGATTAGTA
TTTAAGCTACAAAGAATGTTTTTGTCTACATGGATCTGGAAGTATGCTGCTTGGAAAATCTGAA
CAGGACAGTTCCACGTTTCTATAGCAACCACATTTAACTAATTTCCGTTAGTTGAATAAGAGGT
ATTATGTTCGTGGAGAGGACATTATGGTGCTTTGGATTGTGTGGAAACTATGCATTTTTTTGTT
CAAATGCTATTTTAATTTATTATGTCTAGAAAAAAAATCAATTTGATTTAAACAATTCATTCTG
CTTCAAGATTCAAGTTAAGAAATATAGTACCATCTTGAGTAGCTGAAGAGTTCTATGAGCATGT
GTGTGTCTGCTGTAAATGACGTTATTGTACGGCACTCAAGCAGTGTGTTAAATGACCACTAACA
TGCTTTTCTTCGCCCGTGATTAGCGGGCTGTATGTAACTGGGTAGGAGATCACATTTCCTAAGA
CCTAGATGTATAACCACCCACAACATCTCAGCTCCTACTGTGTAAGTTTGGAGTGCAATCAAAC
ACTTAGAAAACAGGTGAAGAGGTTTAGATTCCATTCTACTTCAGCTAACGTGGCTACATATGAC
CTAGTACACTTGAAGTCAGACAGACATTTCAGTTGCTTACCTCCAGTACTGAGCCTTGCTTTGG
AAAACTAAGAGATTTAGACCAAGTCACTGCCAGTTTTTGCCTTTGTTGCATTTTGTACAGTTTT
ATATTTTTGATATCTTGTAAATAAAGACAACCAGCTTTTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099835	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94368	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027482.4

RefSeq Acc Id:

NP_001099835 ⟸ NM_001106365

- UniProtKB:

D3ZH66 (UniProtKB/TrEMBL), A6JHP4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAALAEEQTEVAVKLESEGPPTLLPPQAGDGAGEGSGGTPNNGPNGGGGNVAAAAGGDGGTPKP
VVAVSAAAPAGAAPVPAAPAEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREARLLEEAVAGS
GAPGELDGAGAEAASALLSRVTASVPGSAAPDTPGAGASVTSVFSGSASGPAAPGKVASVAVED
QPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHES
EAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQ
EKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPL
DDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKR
VRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLS
LIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCL
VGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYV
ATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGE
LKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLL
GTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000027482 ⟸ ENSRNOT00000027482

Protein Domains

TFIID subunit TAF5 NTD2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZH66-F1-model_v2	AlphaFold	D3ZH66	1-798	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690976

Promoter ID:

EPDNEW_R1500

Type:

multiple initiation site

Name:

Taf5_1

Description:

TATA-box binding protein associated factor 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	266,844,493 - 266,844,553	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311332	AgrOrtholog
BioCyc Gene	G2FUF-55492	BioCyc
Ensembl Genes	ENSRNOG00000020274	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027482.5	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.500	UniProtKB/TrEMBL
	2.130.10.10	UniProtKB/TrEMBL
InterPro	G-protein_beta_WD-40_rep_reg	UniProtKB/TrEMBL
	LisH_dimerisation	UniProtKB/TrEMBL
	TFIID-su_WD40-assoc_reg	UniProtKB/TrEMBL
	TFIID_NTD2_sf	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:294018	UniProtKB/TrEMBL
NCBI Gene	294018	ENTREZGENE
PANTHER	PTHR19879	UniProtKB/TrEMBL
	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 5	UniProtKB/TrEMBL
Pfam	TFIID_90kDa	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
PhenoGen	Taf5	PhenoGen
PRINTS	GPROTEINBRPT	UniProtKB/TrEMBL
PROSITE	LISH	UniProtKB/TrEMBL
	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020274	RatGTEx
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF160897	UniProtKB/TrEMBL
	WD40_like	UniProtKB/TrEMBL
UniProt	A6JHP4	ENTREZGENE, UniProtKB/TrEMBL
	D3ZH66	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-08	Taf5	TATA-box binding protein associated factor 5	Taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	Taf5_predicted	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Taf5_predicted	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

RGD Manual Annotations