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Gene: Srrm1 (serine and arginine repetitive matrix 1) Rattus norvegicus

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Symbol:

Srrm1

Name:

serine and arginine repetitive matrix 1

RGD ID:

1311258

Description:

Predicted to enable RNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to be located in nuclear speck. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human SRRM1 (serine and arginine repetitive matrix 1); PARTICIPATES IN spliceosome pathway; mRNA decay pathway; RNA transport pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313620; serine/arginine repetitive matrix 1; serine/arginine repetitive matrix protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SRRM1 (serine and arginine repetitive matrix 1)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Srrm1 (serine/arginine repetitive matrix 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Srrm1 (serine and arginine repetitive matrix 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SRRM1 (serine and arginine repetitive matrix 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SRRM1 (serine and arginine repetitive matrix 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Srrm1 (serine and arginine repetitive matrix 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SRRM1 (serine and arginine repetitive matrix 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SRRM1 (serine and arginine repetitive matrix 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Srrm1 (serine and arginine repetitive matrix 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Srrm1 (serine and arginine repetitive matrix 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SHANK2 (SH3 and multiple ankyrin repeat domains 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SRRM1 (serine and arginine repetitive matrix 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Srrm1 (serine/arginine repetitive matrix 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	srrm1 (serine/arginine repetitive matrix 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rsr-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rsr-1	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	SRm160	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	SRm160	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	srrm1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	srrm1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	152,843,167 - 152,875,554 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	152,843,169 - 152,875,436 (-)	Ensembl				GRCr8
mRatBN7.2	5	147,559,515 - 147,591,895 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	147,559,514 - 147,591,849 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	150,260,954 - 150,293,199 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	152,032,389 - 152,064,605 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	152,017,229 - 152,049,475 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	153,675,619 - 153,708,187 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	153,675,624 - 153,708,170 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	157,444,412 - 157,476,977 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	154,113,002 - 154,145,275 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	145,969,357 - 146,001,815 (-)	NCBI		Celera
RGSC_v3.1	5	154,123,912 - 154,157,892 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gestational diabetes (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

acrolein (ISO)

alpha-pinene (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

Benzo[ghi]perylene (ISO)

beta-lapachone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

buta-1,3-diene (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

coumarin (ISO)

cyclosporin A (ISO)

DDE (ISO)

deoxynivalenol (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diisononyl phthalate (ISO)

diuron (EXP)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

furfural (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

hexadecanoic acid (ISO)

ivermectin (ISO)

methamphetamine (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

methylparaben (ISO)

nitrates (ISO)

ozone (ISO)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

phenethyl isothiocyanate (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (EXP,ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

thimerosal (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

uranium atom (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

mRNA processing (IEA)

regulation of mRNA splicing, via spliceosome (IBA)

RNA splicing (IEA)

Cellular Component

catalytic step 2 spliceosome (IEA,ISO)

nuclear speck (IEA,ISO)

spliceosomal complex (IBA,IEA,ISO)

U12-type catalytic step 2 spliceosome (IEA,ISO)

U2-type catalytic step 1 spliceosome (IEA,ISO)

Molecular Function

protein binding (ISO)

RNA binding (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

mRNA decay pathway (IEA)

RNA transport pathway (IEA)

spliceosome pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.	Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	A preliminary investigation on placenta protein profile reveals only modest changes in well controlled gestational diabetes mellitus.	Lapolla A, etal., Eur J Mass Spectrom (Chichester, Eng). 2013;19(3):211-23.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation
10.	The ever-increasing complexities of the exon junction complex.	Tange TO, etal., Curr Opin Cell Biol. 2004 Jun;16(3):279-84.

Additional References at PubMed

PMID:11555636	PMID:11991638	PMID:12477932	PMID:22681889

Genomics

Comparative Map Data

Srrm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	152,843,167 - 152,875,554 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	152,843,169 - 152,875,436 (-)	Ensembl				GRCr8
mRatBN7.2	5	147,559,515 - 147,591,895 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	147,559,514 - 147,591,849 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	150,260,954 - 150,293,199 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	152,032,389 - 152,064,605 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	152,017,229 - 152,049,475 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	153,675,619 - 153,708,187 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	153,675,624 - 153,708,170 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	157,444,412 - 157,476,977 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	154,113,002 - 154,145,275 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	145,969,357 - 146,001,815 (-)	NCBI		Celera
RGSC_v3.1	5	154,123,912 - 154,157,892 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

SRRM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	24,643,302 - 24,673,281 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	24,631,716 - 24,673,281 (+)	Ensembl			hg38	GRCh38
GRCh37	1	24,969,793 - 24,999,772 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	24,842,181 - 24,872,359 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	24,714,899 - 24,745,067	NCBI
Celera	1	23,296,748 - 23,326,926 (+)	NCBI		Celera
Cytogenetic Map	1	p36.11	NCBI
HuRef	1	23,226,021 - 23,256,316 (+)	NCBI		HuRef
CHM1_1	1	25,082,458 - 25,112,630 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	24,481,714 - 24,511,711 (+)	NCBI		T2T-CHM13v2.0

Srrm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	135,047,795 - 135,080,787 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	135,047,795 - 135,080,632 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	135,320,484 - 135,353,277 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	135,320,484 - 135,353,321 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	134,876,399 - 134,909,129 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	134,594,109 - 134,625,212 (-)	NCBI		MGSCv36	mm8
Celera	4	133,520,897 - 133,553,516 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	67.34	NCBI

Srrm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	4,401,089 - 4,435,391 (+)	Ensembl
ChiLan1.0	NW_004955452	4,401,089 - 4,433,986 (+)	NCBI	ChiLan1.0	ChiLan1.0

SRRM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	202,258,410 - 202,289,470 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	201,361,917 - 201,392,150 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	23,844,303 - 23,874,333 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	24,821,565 - 24,850,997 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	24,821,565 - 24,850,997 (+)	Ensembl			panPan2	panpan1.1

SRRM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	75,018,637 - 75,053,908 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	75,019,339 - 75,049,398 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	71,592,376 - 71,627,550 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	75,580,276 - 75,615,505 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	75,580,276 - 75,610,975 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	72,402,996 - 72,438,163 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	73,410,032 - 73,445,248 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	74,414,288 - 74,449,470 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Srrm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	43,748,316 - 43,777,438 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	9,572,974 - 9,602,229 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	9,573,015 - 9,602,229 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SRRM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	82,286,211 - 82,343,766 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	82,309,192 - 82,348,076 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	76,007,660 - 76,046,730 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SRRM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	108,023,860 - 108,053,959 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	8,307,224 - 8,337,352 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Srrm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	9,010,499 - 9,042,579 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	9,010,440 - 9,043,277 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Srrm1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	22,864,229 - 22,896,343 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Srrm1
284 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	549
Count of miRNA genes:	270
Interacting mature miRNAs:	330
Transcripts:	ENSRNOT00000056105
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

RH127337

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056105 ⟹ ENSRNOP00000052955

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	152,843,169 - 152,875,436 (-)	Ensembl
mRatBN7.2 Ensembl	5	147,559,515 - 147,591,791 (-)	Ensembl
Rnor_6.0 Ensembl	5	153,675,624 - 153,708,114 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082037 ⟹ ENSRNOP00000073024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	152,844,736 - 152,875,436 (-)	Ensembl
mRatBN7.2 Ensembl	5	147,560,894 - 147,587,323 (-)	Ensembl
Rnor_6.0 Ensembl	5	153,677,161 - 153,708,170 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096755 ⟹ ENSRNOP00000097970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	152,843,899 - 152,875,436 (-)	Ensembl
mRatBN7.2 Ensembl	5	147,559,520 - 147,587,323 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116482 ⟹ ENSRNOP00000088781

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	147,585,380 - 147,591,849 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119442 ⟹ ENSRNOP00000082336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	152,843,899 - 152,875,436 (-)	Ensembl
mRatBN7.2 Ensembl	5	147,559,514 - 147,591,849 (-)	Ensembl

RefSeq Acc Id:

NM_001107986 ⟹ NP_001101456

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,436 (-)	NCBI
mRatBN7.2	5	147,559,518 - 147,591,790 (-)	NCBI
Rnor_6.0	5	153,675,622 - 153,708,114 (-)	NCBI
Rnor_5.0	5	157,444,412 - 157,476,977 (-)	NCBI
RGSC_v3.4	5	154,113,002 - 154,145,275 (-)	RGD
Celera	5	145,969,357 - 146,001,815 (-)	RGD

Sequence:

show sequence

GAGCGATCTCCGAGCGAGGCAGCAAGATGGACGCGGGATTCTTCCGCGGAACAAGTGCGGAGCA
GGATAATCGATTCAGCAACAAACAGAAGAAACTCCTCAAGCAGCTGAAATTTGCAGAATGTCTA
GAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGTTATAAAGCCTTGGATAACAAAAAGAG
TGACTGAGATCCTTGGATTCGAAGATGATGTTGTGATTGAGTTTATATTCAACCAGCTGGAAGT
GAAGAACCCAGATTCCAAAATGATGCAAATCAACCTGACTGGATTTTTGAATGGGAAGAATGCT
AGAGAGTTCATGGGAGAACTGTGGCCTCTGCTGTTAAGTGCACAAGAAAATATCGCCGGAATCC
CTTCTGCTTTCCTAGAGTTGAAGAAGGAAGAGATAAAGCAGAGACAAATTGAACAAGAAAAATT
GGCGTCTCTGAAAAAACAAGATGAAGATAAAGATAAGAGGGATAAGGAAGAAAAAGAAAGCAGC
AGAGAGAAGAGGGAGCGGTCTCGCAGCCCAAGAAGACGCAAATCCAGATCTCCTTCCCCTAGAA
GACGATCTTCCCCTGTCAGGAGAGAGAGAAAGCGCAGTCACTCTCGATCTCCCCGTCACAGAAC
CAAGAGCCGGAGCCCTTCCCCTGCCCCAGAAAAGAAGGAGAAATCTCCAGAGCTCCCAGAACCA
TCAGTGAGAATGAAAGACTCTTCAGTACAAGAGGCCACATCTACAAGTGACATCTTGAAAGCTC
CCAAGCCTGAGCCTGTACCAGAGCCCAAAGAACCATCTCCAGAAAAAAATTCCAAAAAGGAAAA
GGAAAAGACTCGACCAAGATCTCGGTCACGTTCCAAATCACGGTCCCGGACTCGTTCTCGGTCA
CCTTCTCATACGAGACCCAGACGGCGACATAGATCCCGATCAAGATCATACTCTCCTAGAAGGC
GACCAAGCCCCAGACGACGACCATCTCCCCGAAGAAGAACTCCACCAAGACGGATGCCTCCTCC
ACCACGGCACAGGAGGAGTAGGTCTCCAGGGAGACGAAGGAGACGTTCTTCCGCATCGCTGTCT
GGAAGTAGCTCGTCGTCCTCTTCATCTCGTTCCCGGTCACCGCCAAAGAAGCCTCCCAAGAGGA
CATCCAGCCCTCCTCGGAAAACTCGTAGGTTATCACCTTCGGCAAGTCCTCCGAGGCGAAGGCA
CCGGCCGTCATCTCCAGCAACTCCGCCACCCAAAACTCGCCATTCCCCAACTCCCCAGCAGTCA
AACCGTGCAAGAAAAAGTCGTGTGTCTGTGTCTCCAGGAAGAACCTCGGGTAAAGTGACAAAAC
ATAAAGGCACTGAGAAAAGAGAGTCACCTTCTCCAGCACCCAAGCCTAGAAAAGTGGAGCTGTC
TGAGTCTGAGGAAGACAAAGGCAGCAAAATGGCTGCAGCTGATTCTGTGCAGCAGAGGCGACAA
TATAGACGACAGAACCAGCAGTCTTCATCTGACTCTGGCTCCTCTTCCACCTCAGAAGATGAGC
GGCCCAAGAGATCCCATGTGAAGAATGGTGAGGTAGGCAGGCGGCGGAGACATTCTCCTTCTCG
GAGTGCCTCTCCATCACCTCGAAAGCGCCAAAAAGAGACTTCCCCTCGTAGTAGAAGGAGGAGA
AGTCCTTCCCCACCTCCTGCCAGAAGACGACGATCTCCTTCTCCAGCCCCTCCTCCCCCTCCTC
CCCCACCTCCTCGGCGGCGCAGATCTCCCACCCCACCACCACGACGAAGGACCCCTTCTCCTCC
CCCACGCCGCCGCTCACCGTCTCCAAGAAGATACTCTCCTCCCATCCAGAGGAGATACTCTCCT
TCCCCACCTCCAAAGAGGAGAACTGCCTCGCCCCCACCCCCACCCAAGCGAAGGGCATCGCCAT
CTCCTCCACCAAAGCGCCGGGTTTCCCACTCTCCACCTCCTAAACAAAGAAGCCCCCCAGTCAC
CAAGAGACGCTCACCCTCCTTATCTTCAAAGCATAGGAAAGGGTCTTCCCCAGGCCGCTCCACT
CGGGAGGCCCGGTCACCACAACCAAACAAAAGGCACTCGCCCTCACCACGACCTCGGGCGCCTC
AGACCTCAAGCCCTCCCCCTGTTCGAAGAGGAGCTTCAGCGTCTCCCCAAGGAAGGCAGTCCCC
GTCTCCGAGTACTAGGCCTATTAGGAGAGTCTCCAGGACTCCGGAACCCAAAAAGATAAAAAAG
GCTGCCTCACCAAGCCCTCAGTCCGTAAGAAGGGTTTCATCTTCCCGCTCTGTCTCTGGATCTC
CTGAGCCAACAGCTAAAAAGCCTCCAGCACCCCCCTCTCCTGTGCAGTCTCAGTCACCCTCCAC
AAACTGGTCACCTGCAGCACCAGCCAAGAAGGCTAAAAGCCCAACACCAAGCCCGTCCCCTGCC
AGGAATTCTGATCAAGAAGGAGGTGGAAAGAAGAAGAAGAAGAAGAAGGACAAGAAACATAAGA
AGGATAAGAAACACAAGAAGCACAAAAAACACAAGAAGGAGAAGGCTGTGGCCGTAGCCACCCC
AGCTCCTGCTGCCCCTGCAGCTGTCTCTGCTGCCGCCACTCCATCAGCCCAGGAAGAGCCTGCG
GCAGCACCAGAGCCCAGGAAGGAGACTGAGAGTGAAGCTGAAGATGACAACCTTGATGACTTAG
AGAGGCACCTTCGGGAGAAGGCCCTTCGATCCATGCGGAAGGCCCAAGTGTCCCCACAGTCCTA
GGCGGACATGTTTGTTACGTTGTAAATTTTATTTGGTTTGTACTCAATTCAATTTCAAAATTGC
TAAAATGTGTTTGAGCTTTAGACTATAACATTTGTTGTAATAATTGCTAGGTTGAAGTTCACCA
TGTTAAAAAAGGGGGGCATGGATTTACATTACAAAGGTGTCCACGGTGTATTAGTGACAATTCT
TCCATTGACATTTAGAGTGAAATATTTTAAGCCAAAAAAAAATCTCTTTTTTAAAAAAGGGGGT
TTGAATATTGTTGGCATTTTTGTGGTTCCTTTAAATGCCCTCGCCTCTCCCAAAAGGTTGGGGT
CTTTTCTTTTTCTCCCTATTCTCTTGAATCTTAGCACCCATGTAAATTATGCTTCCAACCTTGT
ATAGGTTTGTAAGCTTGCCCAGAAGTGAGAGCACTGTTGAAGTACCACAGAGGTTTGGGCGAGT
GAGTGTTGACTCTGTTGCCCATGGAGTCTGCTGTCCTGGCAGCATCCCAGCTCTAGAGCGCCGC
ACTCCTGAGCTACAGGGCTGCCCCATGGAACAGTTCCTAAACTGACTAGGAACTCTGGGTTTTC
TCCTTCCGGTTGTGTTGTTTTGTTTCCTTCTCCCCTTTTCTTCCTCTTTTGTAAAGGCGATTCA
CTAGACCCAGGAAGGACCCTTCAGTTACATAAATTTGTTTTATGAAACATGGTGGCTCCCATTC
ATGGTTTCCCTTACTCTTCCAATTGGTACACACAACTGAGGAGCTCCTGTATTTGGCCGGCTGG
AAGGGCCTGGACAGTGTCTTGATTTCACTTGTTTTATTTTATTTTATTTTTTAACTAAAGCTAT
ATAAAGCTTGTGGATTAAACAGAATAAATTTCTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006239182 ⟹ XP_006239244

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,554 (-)	NCBI
mRatBN7.2	5	147,559,515 - 147,591,895 (-)	NCBI
Rnor_6.0	5	153,675,622 - 153,708,187 (-)	NCBI
Rnor_5.0	5	157,444,412 - 157,476,977 (-)	NCBI

Sequence:

show sequence

AGCATCCCGGCGCTGGGCTCCCCTCTGCCGGTCCCGCCCTCCGTCGCGGCGGCGCGGTGCACAC
TGGGATAGGGAGCGATCTCCGAGCGAGGCAGCAAGATGGACGCGGGATTCTTCCGCGGAACAAG
TGCGGAGCAGGATAATCGATTCAGCAACAAACAGAAGAAACTCCTCAAGCAGCTGAAATTTGCA
GAATGTCTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGTTATAAAGCCTTGGATAA
CAAAAAGAGTGACTGAGATCCTTGGATTCGAAGATGATGTTGTGATTGAGTTTATATTCAACCA
GCTGGAAGTGAAGAACCCAGATTCCAAAATGATGCAAATCAACCTGACTGGATTTTTGAATGGG
AAGAATGCTAGAGAGTTCATGGGAGAACTGTGGCCTCTGCTGTTAAGTGCACAAGAAAATATCG
CCGGAATCCCTTCTGCTTTCCTAGAGTTGAAGAAGGAAGAGATAAAGCAGAGACAAATTGAACA
AGAAAAATTGGCGTCTCTGAAAAAACAAGATGAAGATAAAGATAAGAGGGATAAGGAAGAAAAA
GAAAGCAGCAGAGAGAAGAGGGAGCGGTCTCGCAGCCCAAGAAGACGCAAATCCAGATCTCCTT
CCCCTAGAAGACGATCTTCCCCTGTCAGGAGAGAGAGAAAGCGCAGTCACTCTCGATCTCCCCG
TCACAGAACCAAGAGCCGGAGCCCTTCCCCTGCCCCAGAAAAGAAGGAGAAATCTCCAGAGCTC
CCAGAACCATCAGTGAGAATGAAAGACTCTTCAGTACAAGAGGCCACATCTACAAGTGACATCT
TGAAAGCTCCCAAGCCTGAGCCTGTACCAGAGCCCAAAGAACCATCTCCAGAAAAAAATTCCAA
AAAGGAAAAGGAAAAGACTCGACCAAGATCTCGGTCACGTTCCAAATCACGGTCCCGGACTCGT
TCTCGGTCACCTTCTCATACGAGACCCAGACGGCGACATAGATCCCGATCAAGATCATACTCTC
CTAGAAGGCGACCAAGCCCCAGACGACGACCATCTCCCCGAAGAAGAACTCCACCAAGACGGAT
GCCTCCTCCACCACGGCACAGGAGGAGTAGGTCTCCAGGGAGACGAAGGAGACGTTCTTCCGCA
TCGCTGTCTGGAAGTAGCTCGTCGTCCTCTTCATCTCGTTCCCGGTCACCGCCAAAGAAGCCTC
CCAAGAGGACATCCAGCCCTCCTCGGAAAACTCGTAGGTTATCACCTTCGGCAAGTCCTCCGAG
GCGAAGGCACCGGCCGTCATCTCCAGCAACTCCGCCACCCAAAACTCGCCATTCCCCAACTCCC
CAGCAGTCAAACCGTGCAAGAAAAAGTCGTGTGTCTGTGTCTCCAGGAAGAACCTCGGGTAAAG
TGACAAAACATAAAGGCACTGAGAAAAGAGAGTCACCTTCTCCAGCACCCAAGCCTAGAAAAGT
GGAGCTGTCTGAGTCTGAGGAAGACAAAGGCAGCAAAATGGCTGCAGCTGATTCTGTGCAGCAG
AGGCGACAATATAGACGACAGAACCAGCAGTCTTCATCTGACTCTGGCTCCTCTTCCACCTCAG
AAGATGAGCGGCCCAAGAGATCCCATGTGAAGAATGGTGAGGTAGGCAGGCGGCGGAGACATTC
TCCTTCTCGGAGTGCCTCTCCATCACCTCGAAAGCGCCAAAAAGAGACTTCCCCTCGGATGCAG
ATGGGAAAGCGATGGCAGTCGCCAGTGACTAAAAGTAGTAGAAGGAGGAGAAGTCCTTCCCCAC
CTCCTGCCAGAAGACGACGATCTCCTTCTCCAGCCCCTCCTCCCCCTCCTCCCCCACCTCCTCG
GCGGCGCAGATCTCCCACCCCACCACCACGACGAAGGACCCCTTCTCCTCCCCCACGCCGCCGC
TCACCGTCTCCAAGAAGATACTCTCCTCCCATCCAGAGGAGATACTCTCCTTCCCCACCTCCAA
AGAGGAGAACTGCCTCGCCCCCACCCCCACCCAAGCGAAGGGCATCGCCATCTCCTCCACCAAA
GCGCCGGGTTTCCCACTCTCCACCTCCTAAACAAAGAAGCCCCCCAGTCACCAAGAGACGCTCA
CCCTCCTTATCTTCAAAGCATAGGAAAGGGTCTTCCCCAGGCCGCTCCACTCGGGAGGCCCGGT
CACCACAACCAAACAAAAGGCACTCGCCCTCACCACGACCTCGGGCGCCTCAGACCTCAAGCCC
TCCCCCTGTTCGAAGAGGAGCTTCAGCGTCTCCCCAAGGAAGGCAGTCCCCGTCTCCGAGTACT
AGGCCTATTAGGAGAGTCTCCAGGACTCCGGAACCCAAAAAGATAAAAAAGGCTGCCTCACCAA
GCCCTCAGTCCGTAAGAAGGGTTTCATCTTCCCGCTCTGTCTCTGGATCTCCTGAGCCAACAGC
TAAAAAGCCTCCAGCACCCCCCTCTCCTGTGCAGTCTCAGTCACCCTCCACAAACTGGTCACCT
GCAGCACCAGCCAAGAAGGCTAAAAGCCCAACACCAAGCCCGTCCCCTGCCAGGAATTCTGATC
AAGAAGGAGGTGGAAAGAAGAAGAAGAAGAAGAAGGACAAGAAACATAAGAAGGATAAGAAACA
CAAGAAGCACAAAAAACACAAGAAGGAGAAGGCTGTGGCCGTAGCCACCCCAGCTCCTGCTGCC
CCTGCAGCTGTCTCTGCTGCCGCCACTCCATCAGCCCAGGAAGAGCCTGCGGCAGCACCAGAGC
CCAGGAAGGAGACTGAGAGTGAAGCTGAAGATGACAACCTTGATGACTTAGAGAGGCACCTTCG
GGAGAAGGCCCTTCGATCCATGCGGAAGGCCCAAGTGTCCCCACAGTCCTAGGCGGACATGTTT
GTTACGTTGTAAATTTTATTTGGTTTGTACTCAATTCAATTTCAAAATTGCTAAAATGTGTTTG
AGCTTTAGACTATAACATTTGTTGTAATAATTGCTAGGTTGAAGTTCACCATGTTAAAAAAGGG
GGGCATGGATTTACATTACAAAGGTGTCCACGGTGTATTAGTGACAATTCTTCCATTGACATTT
AGAGTGAAATATTTTAAGCCAAAAAAAAATCTCTTTTTTAAAAAAGGGGGTTTGAATATTGTTG
GCATTTTTGTGGTTCCTTTAAATGCCCTCGCCTCTCCCAAAAGGTTGGGGTCTTTTCTTTTTCT
CCCTATTCTCTTGAATCTTAGCACCCATGTAAATTATGCTTCCAACCTTGTATAGGTTTGTAAG
CTTGCCCAGAAGTGAGAGCACTGTTGAAGTACCACAGAGGTTTGGGCGAGTGAGTGTTGACTCT
GTTGCCCATGGAGTCTGCTGTCCTGGCAGCATCCCAGCTCTAGAGCGCCGCACTCCTGAGCTAC
AGGGCTGCCCCATGGAACAGTTCCTAAACTGACTAGGAACTCTGGGTTTTCTCCTTCCGGTTGT
GTTGTTTTGTTTCCTTCTCCCCTTTTCTTCCTCTTTTGTAAAGGCGATTCACTAGACCCAGGAA
GGACCCTTCAGTTACATAAATTTGTTTTATGAAACATGGTGGCTCCCATTCATGGTTTCCCTTA
CTCTTCCAATTGGTACACACAACTGAGGAGCTCCTGTATTTGGCCGGCTGGAAGGGCCTGGACA
GTGTCTTGATTTCACTTGTTTTATTTTATTTTATTTTTTAACTAAAGCTATATAAAGCTTGTGG
ATTAAACAGAATAAATTTCTAAATTTAA

hide sequence

RefSeq Acc Id:

XM_006239183 ⟹ XP_006239245

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,554 (-)	NCBI
mRatBN7.2	5	147,559,515 - 147,591,895 (-)	NCBI
Rnor_6.0	5	153,675,622 - 153,708,187 (-)	NCBI
Rnor_5.0	5	157,444,412 - 157,476,977 (-)	NCBI

Sequence:

show sequence

AGCATCCCGGCGCTGGGCTCCCCTCTGCCGGTCCCGCCCTCCGTCGCGGCGGCGCGGTGCACAC
TGGGATAGGGAGCGATCTCCGAGCGAGGCAGCAAGATGGACGCGGGATTCTTCCGCGGAACAAG
TGCGGAGCAGGATAATCGATTCAGCAACAAACAGAAGAAACTCCTCAAGCAGCTGAAATTTGCA
GAATGTCTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGTTATAAAGCCTTGGATAA
CAAAAAGAGTGACTGAGATCCTTGGATTCGAAGATGATGTTGTGATTGAGTTTATATTCAACCA
GCTGGAAGTGAAGAACCCAGATTCCAAAATGATGCAAATCAACCTGACTGGATTTTTGAATGGG
AAGAATGCTAGAGAGTTCATGGGAGAACTGTGGCCTCTGCTGTTAAGTGCACAAGAAAATATCG
CCGGAATCCCTTCTGCTTTCCTAGAGTTGAAGAAGGAAGAGATAAAGCAGAGACAAATTGAACA
AGAAAAATTGGCGTCTCTGAAAAAACAAGATGAAGATAAAGATAAGAGGGATAAGGAAGAAAAA
GAAAGCAGCAGAGAGAAGAGGGAGCGGTCTCGCAGCCCAAGAAGACGCAAATCCAGATCTCCTT
CCCCTAGAAGACGATCTTCCCCTGTCAGGAGAGAGAGAAAGCGCAGTCACTCTCGATCTCCCCG
TCACAGAACCAAGAGCCGGAGCCCTTCCCCTGCCCCAGAAAAGAAGGAGAAATCTCCAGAGCTC
CCAGAACCATCAGTGAGAATGAAAGACTCTTCAGTACAAGAGGCCACATCTACAAGTGACATCT
TGAAAGCTCCCAAGCCTGAGCCTGTACCAGAGCCCAAAGAACCATCTCCAGAAAAAAATTCCAA
AAAGGAAAAGGAAAAGACTCGACCAAGATCTCGGTCACGTTCCAAATCACGGTCCCGGACTCGT
TCTCGGTCACCTTCTCATACGAGACCCAGACGGCGACATAGATCCCGATCAAGATCATACTCTC
CTAGAAGGCGACCAAGCCCCAGACGACGACCATCTCCCCGAAGAAGAACTCCACCAAGACGGAT
GCCTCCTCCACCACGGCACAGGAGGAGTAGGTCTCCAGGGAGACGAAGGAGACGTTCTTCCGCA
TCGCTGTCTGGAAGTAGCTCGTCGTCCTCTTCATCTCGTTCCCGGTCACCGCCAAAGAAGCCTC
CCAAGAGGACATCCAGCCCTCCTCGGAAAACTCGTAGGTTATCACCTTCGGCAAGTCCTCCGAG
GCGAAGGCACCGGCCGTCATCTCCAGCAACTCCGCCACCCAAAACTCGCCATTCCCCAACTCCC
CAGCAGTCAAACCGTGCAAGAAAAAGTCGTGTGTCTGTGTCTCCAGGAAGAACCTCGGGTAAAG
TGACAAAACATAAAGGCACTGAGAAAAGAGAGTCACCTTCTCCAGCACCCAAGCCTAGAAAAGT
GGAGCTGTCTGAGTCTGAGGAAGACAAAGGCAGCAAAATGGCTGCAGCTGATTCTGTGCAGCAG
AGGCGACAATATAGACGACAGAACCAGCAGTCTTCATCTGACTCTGGCTCCTCTTCCACCTCAG
AAGATGAGCGGCCCAAGAGATCCCATGTGAAGAATGGTGAGGTAGGCAGGCGGCGGAGACATTC
TCCTTCTCGGAGTGCCTCTCCATCACCTCGAAAGCGCCAAAAAGAGACTTCCCCTCGGATGCAG
ATGGGAAAGCGATGGCAGTCGCCAGTGACTAAAAGTAGAAGGAGGAGAAGTCCTTCCCCACCTC
CTGCCAGAAGACGACGATCTCCTTCTCCAGCCCCTCCTCCCCCTCCTCCCCCACCTCCTCGGCG
GCGCAGATCTCCCACCCCACCACCACGACGAAGGACCCCTTCTCCTCCCCCACGCCGCCGCTCA
CCGTCTCCAAGAAGATACTCTCCTCCCATCCAGAGGAGATACTCTCCTTCCCCACCTCCAAAGA
GGAGAACTGCCTCGCCCCCACCCCCACCCAAGCGAAGGGCATCGCCATCTCCTCCACCAAAGCG
CCGGGTTTCCCACTCTCCACCTCCTAAACAAAGAAGCCCCCCAGTCACCAAGAGACGCTCACCC
TCCTTATCTTCAAAGCATAGGAAAGGGTCTTCCCCAGGCCGCTCCACTCGGGAGGCCCGGTCAC
CACAACCAAACAAAAGGCACTCGCCCTCACCACGACCTCGGGCGCCTCAGACCTCAAGCCCTCC
CCCTGTTCGAAGAGGAGCTTCAGCGTCTCCCCAAGGAAGGCAGTCCCCGTCTCCGAGTACTAGG
CCTATTAGGAGAGTCTCCAGGACTCCGGAACCCAAAAAGATAAAAAAGGCTGCCTCACCAAGCC
CTCAGTCCGTAAGAAGGGTTTCATCTTCCCGCTCTGTCTCTGGATCTCCTGAGCCAACAGCTAA
AAAGCCTCCAGCACCCCCCTCTCCTGTGCAGTCTCAGTCACCCTCCACAAACTGGTCACCTGCA
GCACCAGCCAAGAAGGCTAAAAGCCCAACACCAAGCCCGTCCCCTGCCAGGAATTCTGATCAAG
AAGGAGGTGGAAAGAAGAAGAAGAAGAAGAAGGACAAGAAACATAAGAAGGATAAGAAACACAA
GAAGCACAAAAAACACAAGAAGGAGAAGGCTGTGGCCGTAGCCACCCCAGCTCCTGCTGCCCCT
GCAGCTGTCTCTGCTGCCGCCACTCCATCAGCCCAGGAAGAGCCTGCGGCAGCACCAGAGCCCA
GGAAGGAGACTGAGAGTGAAGCTGAAGATGACAACCTTGATGACTTAGAGAGGCACCTTCGGGA
GAAGGCCCTTCGATCCATGCGGAAGGCCCAAGTGTCCCCACAGTCCTAGGCGGACATGTTTGTT
ACGTTGTAAATTTTATTTGGTTTGTACTCAATTCAATTTCAAAATTGCTAAAATGTGTTTGAGC
TTTAGACTATAACATTTGTTGTAATAATTGCTAGGTTGAAGTTCACCATGTTAAAAAAGGGGGG
CATGGATTTACATTACAAAGGTGTCCACGGTGTATTAGTGACAATTCTTCCATTGACATTTAGA
GTGAAATATTTTAAGCCAAAAAAAAATCTCTTTTTTAAAAAAGGGGGTTTGAATATTGTTGGCA
TTTTTGTGGTTCCTTTAAATGCCCTCGCCTCTCCCAAAAGGTTGGGGTCTTTTCTTTTTCTCCC
TATTCTCTTGAATCTTAGCACCCATGTAAATTATGCTTCCAACCTTGTATAGGTTTGTAAGCTT
GCCCAGAAGTGAGAGCACTGTTGAAGTACCACAGAGGTTTGGGCGAGTGAGTGTTGACTCTGTT
GCCCATGGAGTCTGCTGTCCTGGCAGCATCCCAGCTCTAGAGCGCCGCACTCCTGAGCTACAGG
GCTGCCCCATGGAACAGTTCCTAAACTGACTAGGAACTCTGGGTTTTCTCCTTCCGGTTGTGTT
GTTTTGTTTCCTTCTCCCCTTTTCTTCCTCTTTTGTAAAGGCGATTCACTAGACCCAGGAAGGA
CCCTTCAGTTACATAAATTTGTTTTATGAAACATGGTGGCTCCCATTCATGGTTTCCCTTACTC
TTCCAATTGGTACACACAACTGAGGAGCTCCTGTATTTGGCCGGCTGGAAGGGCCTGGACAGTG
TCTTGATTTCACTTGTTTTATTTTATTTTATTTTTTAACTAAAGCTATATAAAGCTTGTGGATT
AAACAGAATAAATTTCTAAATTTAA

hide sequence

RefSeq Acc Id:

XM_006239184 ⟹ XP_006239246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,554 (-)	NCBI
mRatBN7.2	5	147,559,515 - 147,591,895 (-)	NCBI
Rnor_6.0	5	153,675,622 - 153,708,187 (-)	NCBI
Rnor_5.0	5	157,444,412 - 157,476,977 (-)	NCBI

Sequence:

show sequence

AGCATCCCGGCGCTGGGCTCCCCTCTGCCGGTCCCGCCCTCCGTCGCGGCGGCGCGGTGCACAC
TGGGATAGGGAGCGATCTCCGAGCGAGGCAGCAAGATGGACGCGGGATTCTTCCGCGGAACAAG
TGCGGAGCAGGATAATCGATTCAGCAACAAACAGAAGAAACTCCTCAAGCAGCTGAAATTTGCA
GAATGTCTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGTTATAAAGCCTTGGATAA
CAAAAAGAGTGACTGAGATCCTTGGATTCGAAGATGATGTTGTGATTGAGTTTATATTCAACCA
GCTGGAAGTGAAGAACCCAGATTCCAAAATGATGCAAATCAACCTGACTGGATTTTTGAATGGG
AAGAATGCTAGAGAGTTCATGGGAGAACTGTGGCCTCTGCTGTTAAGTGCACAAGAAAATATCG
CCGGAATCCCTTCTGCTTTCCTAGAGTTGAAGAAGGAAGAGATAAAGCAGAGACAAATTGAACA
AGAAAAATTGGCGTCTCTGAAAAAACAAGATGAAGATAAAGATAAGAGGGATAAGGAAGAAAAA
GAAAGCAGCAGAGAGAAGAGGGAGCGGTCTCGCAGCCCAAGAAGACGCAAATCCAGATCTCCTT
CCCCTAGAAGACGATCTTCCCCTGTCAGGAGAGAGAGAAAGCGCAGTCACTCTCGATCTCCCCG
TCACAGAACCAAGAGCCGGAGCCCTTCCCCTGCCCCAGAAAAGAAGGAGAAATCTCCAGAGCTC
CCAGAACCATCAGTGAGAATGAAAGACTCTTCAGTACAAGAGGCCACATCTACAAGTGACATCT
TGAAAGCTCCCAAGCCTGAGCCTGTACCAGAGCCCAAAGAACCATCTCCAGAAAAAAATTCCAA
AAAGGAAAAGGAAAAGACTCGACCAAGATCTCGGTCACGTTCCAAATCACGGTCCCGGACTCGT
TCTCGGTCACCTTCTCATACGAGACCCAGACGGCGACATAGATCCCGATCAAGATCATACTCTC
CTAGAAGGCGACCAAGCCCCAGACGACGACCATCTCCCCGAAGAAGAACTCCACCAAGACGGAT
GCCTCCTCCACCACGGCACAGGAGGAGTAGGTCTCCAGGGAGACGAAGGAGACGTTCTTCCGCA
TCGCTGTCTGGAAGTAGCTCGTCGTCCTCTTCATCTCGTTCCCGGTCACCGCCAAAGAAGCCTC
CCAAGAGGACATCCAGCCCTCCTCGGAAAACTCGTAGGTTATCACCTTCGGCAAGTCCTCCGAG
GCGAAGGCACCGGCCGTCATCTCCAGCAACTCCGCCACCCAAAACTCGCCATTCCCCAACTCCC
CAGCAGTCAAACCGTGCAAGAAAAAGTCGTGTGTCTGTGTCTCCAGGAAGAACCTCGGGTAAAG
TGACAAAACATAAAGGCACTGAGAAAAGAGAGTCACCTTCTCCAGCACCCAAGCCTAGAAAAGT
GGAGCTGTCTGAGTCTGAGGAAGACAAAGGCAGCAAAATGGCTGCAGCTGATTCTGTGCAGCAG
AGGCGACAATATAGACGACAGAACCAGCAGTCTTCATCTGAAGATGAGCGGCCCAAGAGATCCC
ATGTGAAGAATGGTGAGGTAGGCAGGCGGCGGAGACATTCTCCTTCTCGGAGTGCCTCTCCATC
ACCTCGAAAGCGCCAAAAAGAGACTTCCCCTCGGATGCAGATGGGAAAGCGATGGCAGTCGCCA
GTGACTAAAAGTAGTAGAAGGAGGAGAAGTCCTTCCCCACCTCCTGCCAGAAGACGACGATCTC
CTTCTCCAGCCCCTCCTCCCCCTCCTCCCCCACCTCCTCGGCGGCGCAGATCTCCCACCCCACC
ACCACGACGAAGGACCCCTTCTCCTCCCCCACGCCGCCGCTCACCGTCTCCAAGAAGATACTCT
CCTCCCATCCAGAGGAGATACTCTCCTTCCCCACCTCCAAAGAGGAGAACTGCCTCGCCCCCAC
CCCCACCCAAGCGAAGGGCATCGCCATCTCCTCCACCAAAGCGCCGGGTTTCCCACTCTCCACC
TCCTAAACAAAGAAGCCCCCCAGTCACCAAGAGACGCTCACCCTCCTTATCTTCAAAGCATAGG
AAAGGGTCTTCCCCAGGCCGCTCCACTCGGGAGGCCCGGTCACCACAACCAAACAAAAGGCACT
CGCCCTCACCACGACCTCGGGCGCCTCAGACCTCAAGCCCTCCCCCTGTTCGAAGAGGAGCTTC
AGCGTCTCCCCAAGGAAGGCAGTCCCCGTCTCCGAGTACTAGGCCTATTAGGAGAGTCTCCAGG
ACTCCGGAACCCAAAAAGATAAAAAAGGCTGCCTCACCAAGCCCTCAGTCCGTAAGAAGGGTTT
CATCTTCCCGCTCTGTCTCTGGATCTCCTGAGCCAACAGCTAAAAAGCCTCCAGCACCCCCCTC
TCCTGTGCAGTCTCAGTCACCCTCCACAAACTGGTCACCTGCAGCACCAGCCAAGAAGGCTAAA
AGCCCAACACCAAGCCCGTCCCCTGCCAGGAATTCTGATCAAGAAGGAGGTGGAAAGAAGAAGA
AGAAGAAGAAGGACAAGAAACATAAGAAGGATAAGAAACACAAGAAGCACAAAAAACACAAGAA
GGAGAAGGCTGTGGCCGTAGCCACCCCAGCTCCTGCTGCCCCTGCAGCTGTCTCTGCTGCCGCC
ACTCCATCAGCCCAGGAAGAGCCTGCGGCAGCACCAGAGCCCAGGAAGGAGACTGAGAGTGAAG
CTGAAGATGACAACCTTGATGACTTAGAGAGGCACCTTCGGGAGAAGGCCCTTCGATCCATGCG
GAAGGCCCAAGTGTCCCCACAGTCCTAGGCGGACATGTTTGTTACGTTGTAAATTTTATTTGGT
TTGTACTCAATTCAATTTCAAAATTGCTAAAATGTGTTTGAGCTTTAGACTATAACATTTGTTG
TAATAATTGCTAGGTTGAAGTTCACCATGTTAAAAAAGGGGGGCATGGATTTACATTACAAAGG
TGTCCACGGTGTATTAGTGACAATTCTTCCATTGACATTTAGAGTGAAATATTTTAAGCCAAAA
AAAAATCTCTTTTTTAAAAAAGGGGGTTTGAATATTGTTGGCATTTTTGTGGTTCCTTTAAATG
CCCTCGCCTCTCCCAAAAGGTTGGGGTCTTTTCTTTTTCTCCCTATTCTCTTGAATCTTAGCAC
CCATGTAAATTATGCTTCCAACCTTGTATAGGTTTGTAAGCTTGCCCAGAAGTGAGAGCACTGT
TGAAGTACCACAGAGGTTTGGGCGAGTGAGTGTTGACTCTGTTGCCCATGGAGTCTGCTGTCCT
GGCAGCATCCCAGCTCTAGAGCGCCGCACTCCTGAGCTACAGGGCTGCCCCATGGAACAGTTCC
TAAACTGACTAGGAACTCTGGGTTTTCTCCTTCCGGTTGTGTTGTTTTGTTTCCTTCTCCCCTT
TTCTTCCTCTTTTGTAAAGGCGATTCACTAGACCCAGGAAGGACCCTTCAGTTACATAAATTTG
TTTTATGAAACATGGTGGCTCCCATTCATGGTTTCCCTTACTCTTCCAATTGGTACACACAACT
GAGGAGCTCCTGTATTTGGCCGGCTGGAAGGGCCTGGACAGTGTCTTGATTTCACTTGTTTTAT
TTTATTTTATTTTTTAACTAAAGCTATATAAAGCTTGTGGATTAAACAGAATAAATTTCTAAAT
TTAA

hide sequence

RefSeq Acc Id:

XM_006239185 ⟹ XP_006239247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,554 (-)	NCBI
mRatBN7.2	5	147,559,515 - 147,591,895 (-)	NCBI
Rnor_6.0	5	153,675,622 - 153,708,187 (-)	NCBI
Rnor_5.0	5	157,444,412 - 157,476,977 (-)	NCBI

Sequence:

show sequence

AGCATCCCGGCGCTGGGCTCCCCTCTGCCGGTCCCGCCCTCCGTCGCGGCGGCGCGGTGCACAC
TGGGATAGGGAGCGATCTCCGAGCGAGGCAGCAAGATGGACGCGGGATTCTTCCGCGGAACAAG
TGCGGAGCAGGATAATCGATTCAGCAACAAACAGAAGAAACTCCTCAAGCAGCTGAAATTTGCA
GAATGTCTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGTTATAAAGCCTTGGATAA
CAAAAAGAGTGACTGAGATCCTTGGATTCGAAGATGATGTTGTGATTGAGTTTATATTCAACCA
GCTGGAAGTGAAGAACCCAGATTCCAAAATGATGCAAATCAACCTGACTGGATTTTTGAATGGG
AAGAATGCTAGAGAGTTCATGGGAGAACTGTGGCCTCTGCTGTTAAGTGCACAAGAAAATATCG
CCGGAATCCCTTCTGCTTTCCTAGAGTTGAAGAAGGAAGAGATAAAGCAGAGACAAATTGAACA
AGAAAAATTGGCGTCTCTGAAAAAACAAGATGAAGATAAAGATAAGAGGGATAAGGAAGAAAAA
GAAAGCAGCAGAGAGAAGAGGGAGCGGTCTCGCAGCCCAAGAAGACGCAAATCCAGATCTCCTT
CCCCTAGAAGACGATCTTCCCCTGTCAGGAGAGAGAGAAAGCGCAGTCACTCTCGATCTCCCCG
TCACAGAACCAAGAGCCGGAGCCCTTCCCCTGCCCCAGAAAAGAAGGAGAAATCTCCAGAGCTC
CCAGAACCATCAGTGAGAATGAAAGACTCTTCAGTACAAGAGGCCACATCTACAAGTGACATCT
TGAAAGCTCCCAAGCCTGAGCCTGTACCAGAGCCCAAAGAACCATCTCCAGAAAAAAATTCCAA
AAAGGAAAAGGAAAAGACTCGACCAAGATCTCGGTCACGTTCCAAATCACGGTCCCGGACTCGT
TCTCGGTCACCTTCTCATACGAGACCCAGACGGCGACATAGATCCCGATCAAGATCATACTCTC
CTAGAAGGCGACCAAGCCCCAGACGACGACCATCTCCCCGAAGAAGAACTCCACCAAGACGGAT
GCCTCCTCCACCACGGCACAGGAGGAGTAGGTCTCCAGGGAGACGAAGGAGACGTTCTTCCGCA
TCGCTGTCTGGAAGTAGCTCGTCGTCCTCTTCATCTCGTTCCCGGTCACCGCCAAAGAAGCCTC
CCAAGAGGACATCCAGCCCTCCTCGGAAAACTCGTAGGTTATCACCTTCGGCAAGTCCTCCGAG
GCGAAGGCACCGGCCGTCATCTCCAGCAACTCCGCCACCCAAAACTCGCCATTCCCCAACTCCC
CAGCAGTCAAACCGTGCAAGAAAAAGTCGTGTGTCTGTGTCTCCAGGAAGAACCTCGGGTAAAG
TGACAAAACATAAAGGCACTGAGAAAAGAGAGTCACCTTCTCCAGCACCCAAGCCTAGAAAAGT
GGAGCTGTCTGAGTCTGAGGAAGACAAAGGCAGCAAAATGGCTGCAGCTGATTCTGTGCAGCAG
AGGCGACAATATAGACGACAGAACCAGCAGTCTTCATCTGACTCTGGCTCCTCTTCCACCTCAG
AAGATGAGCGGCCCAAGAGATCCCATGTGAAGAATGGTGAGGTAGGCAGGCGGCGGAGACATTC
TCCTTCTCGGAGTGCCTCTCCATCACCTCGAAAGCGCCAAAAAGAGACTTCCCCTCGTAGAAGG
AGGAGAAGTCCTTCCCCACCTCCTGCCAGAAGACGACGATCTCCTTCTCCAGCCCCTCCTCCCC
CTCCTCCCCCACCTCCTCGGCGGCGCAGATCTCCCACCCCACCACCACGACGAAGGACCCCTTC
TCCTCCCCCACGCCGCCGCTCACCGTCTCCAAGAAGATACTCTCCTCCCATCCAGAGGAGATAC
TCTCCTTCCCCACCTCCAAAGAGGAGAACTGCCTCGCCCCCACCCCCACCCAAGCGAAGGGCAT
CGCCATCTCCTCCACCAAAGCGCCGGGTTTCCCACTCTCCACCTCCTAAACAAAGAAGCCCCCC
AGTCACCAAGAGACGCTCACCCTCCTTATCTTCAAAGCATAGGAAAGGGTCTTCCCCAGGCCGC
TCCACTCGGGAGGCCCGGTCACCACAACCAAACAAAAGGCACTCGCCCTCACCACGACCTCGGG
CGCCTCAGACCTCAAGCCCTCCCCCTGTTCGAAGAGGAGCTTCAGCGTCTCCCCAAGGAAGGCA
GTCCCCGTCTCCGAGTACTAGGCCTATTAGGAGAGTCTCCAGGACTCCGGAACCCAAAAAGATA
AAAAAGGCTGCCTCACCAAGCCCTCAGTCCGTAAGAAGGGTTTCATCTTCCCGCTCTGTCTCTG
GATCTCCTGAGCCAACAGCTAAAAAGCCTCCAGCACCCCCCTCTCCTGTGCAGTCTCAGTCACC
CTCCACAAACTGGTCACCTGCAGCACCAGCCAAGAAGGCTAAAAGCCCAACACCAAGCCCGTCC
CCTGCCAGGAATTCTGATCAAGAAGGAGGTGGAAAGAAGAAGAAGAAGAAGAAGGACAAGAAAC
ATAAGAAGGATAAGAAACACAAGAAGCACAAAAAACACAAGAAGGAGAAGGCTGTGGCCGTAGC
CACCCCAGCTCCTGCTGCCCCTGCAGCTGTCTCTGCTGCCGCCACTCCATCAGCCCAGGAAGAG
CCTGCGGCAGCACCAGAGCCCAGGAAGGAGACTGAGAGTGAAGCTGAAGATGACAACCTTGATG
ACTTAGAGAGGCACCTTCGGGAGAAGGCCCTTCGATCCATGCGGAAGGCCCAAGTGTCCCCACA
GTCCTAGGCGGACATGTTTGTTACGTTGTAAATTTTATTTGGTTTGTACTCAATTCAATTTCAA
AATTGCTAAAATGTGTTTGAGCTTTAGACTATAACATTTGTTGTAATAATTGCTAGGTTGAAGT
TCACCATGTTAAAAAAGGGGGGCATGGATTTACATTACAAAGGTGTCCACGGTGTATTAGTGAC
AATTCTTCCATTGACATTTAGAGTGAAATATTTTAAGCCAAAAAAAAATCTCTTTTTTAAAAAA
GGGGGTTTGAATATTGTTGGCATTTTTGTGGTTCCTTTAAATGCCCTCGCCTCTCCCAAAAGGT
TGGGGTCTTTTCTTTTTCTCCCTATTCTCTTGAATCTTAGCACCCATGTAAATTATGCTTCCAA
CCTTGTATAGGTTTGTAAGCTTGCCCAGAAGTGAGAGCACTGTTGAAGTACCACAGAGGTTTGG
GCGAGTGAGTGTTGACTCTGTTGCCCATGGAGTCTGCTGTCCTGGCAGCATCCCAGCTCTAGAG
CGCCGCACTCCTGAGCTACAGGGCTGCCCCATGGAACAGTTCCTAAACTGACTAGGAACTCTGG
GTTTTCTCCTTCCGGTTGTGTTGTTTTGTTTCCTTCTCCCCTTTTCTTCCTCTTTTGTAAAGGC
GATTCACTAGACCCAGGAAGGACCCTTCAGTTACATAAATTTGTTTTATGAAACATGGTGGCTC
CCATTCATGGTTTCCCTTACTCTTCCAATTGGTACACACAACTGAGGAGCTCCTGTATTTGGCC
GGCTGGAAGGGCCTGGACAGTGTCTTGATTTCACTTGTTTTATTTTATTTTATTTTTTAACTAA
AGCTATATAAAGCTTGTGGATTAAACAGAATAAATTTCTAAATTTAA

hide sequence

RefSeq Acc Id:

XM_008764242 ⟹ XP_008762464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,264 (-)	NCBI
mRatBN7.2	5	147,559,515 - 147,591,634 (-)	NCBI
Rnor_6.0	5	153,675,619 - 153,708,052 (-)	NCBI

Sequence:

show sequence

GGGATCTGGGTAGAGGCGAGAGGTTTGTTTGTAAGACCCGAGGGGGCGCTCAAAATTCGGGACA
GGACGGCCCGTGGAGGGAGGCCTTAGAGACCCCGAGGGGGCTTGTGGCTAGCGCACCCTGTCCT
CGGCGTTGCGGCCGAGACCGGTGTGCCCCTGCGCAGTCTCCTCCTCTGGGATCGTCCCCCCTAC
GCGGCGGCGGCGGTGGCCGGAAAATGGCGGCGGGAATGGGCTAGAGCCGAACCTCACCGGCCGT
CTGGGAACAAGTGCGGAGCAGGATAATCGATTCAGCAACAAACAGAAGAAACTCCTCAAGCAGC
TGAAATTTGCAGAATGTCTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGTTATAAA
GCCTTGGATAACAAAAAGAGTGACTGAGATCCTTGGATTCGAAGATGATGTTGTGATTGAGTTT
ATATTCAACCAGCTGGAAGTGAAGAACCCAGATTCCAAAATGATGCAAATCAACCTGACTGGAT
TTTTGAATGGGAAGAATGCTAGAGAGTTCATGGGAGAACTGTGGCCTCTGCTGTTAAGTGCACA
AGAAAATATCGCCGGAATCCCTTCTGCTTTCCTAGAGTTGAAGAAGGAAGAGATAAAGCAGAGA
CAAATTGAACAAGAAAAATTGGCGTCTCTGAAAAAACAAGATGAAGATAAAGATAAGAGGGATA
AGGAAGAAAAAGAAAGCAGCAGAGAGAAGAGGGAGCGGTCTCGCAGCCCAAGAAGACGCAAATC
CAGATCTCCTTCCCCTAGAAGACGATCTTCCCCTGTCAGGAGAGAGAGAAAGCGCAGTCACTCT
CGATCTCCCCGTCACAGAACCAAGAGCCGGAGCCCTTCCCCTGCCCCAGAAAAGAAGGAGAAAT
CTCCAGAGCTCCCAGAACCATCAGTGAGAATGAAAGACTCTTCAGTACAAGAGGCCACATCTAC
AAGTGACATCTTGAAAGCTCCCAAGCCTGAGCCTGTACCAGAGCCCAAAGAACCATCTCCAGAA
AAAAATTCCAAAAAGGAAAAGGAAAAGACTCGACCAAGATCTCGGTCACGTTCCAAATCACGGT
CCCGGACTCGTTCTCGGTCACCTTCTCATACGAGACCCAGACGGCGACATAGATCCCGATCAAG
ATCATACTCTCCTAGAAGGCGACCAAGCCCCAGACGACGACCATCTCCCCGAAGAAGAACTCCA
CCAAGACGGATGCCTCCTCCACCACGGCACAGGAGGAGTAGGTCTCCAGGGAGACGAAGGAGAC
GTTCTTCCGCATCGCTGTCTGGAAGTAGCTCGTCGTCCTCTTCATCTCGTTCCCGGTCACCGCC
AAAGAAGCCTCCCAAGAGGACATCCAGCCCTCCTCGGAAAACTCGTAGGTTATCACCTTCGGCA
AGTCCTCCGAGGCGAAGGCACCGGCCGTCATCTCCAGCAACTCCGCCACCCAAAACTCGCCATT
CCCCAACTCCCCAGCAGTCAAACCGTGCAAGAAAAAGTCGTGTGTCTGTGTCTCCAGGAAGAAC
CTCGGGTAAAGTGACAAAACATAAAGGCACTGAGAAAAGAGAGTCACCTTCTCCAGCACCCAAG
CCTAGAAAAGTGGAGCTGTCTGAGTCTGAGGAAGACAAAGGCAGCAAAATGGCTGCAGCTGATT
CTGTGCAGCAGAGGCGACAATATAGACGACAGAACCAGCAGTCTTCATCTGACTCTGGCTCCTC
TTCCACCTCAGAAGATGAGCGGCCCAAGAGATCCCATGTGAAGAATGGTGAGGTAGGCAGGCGG
CGGAGACATTCTCCTTCTCGGAGTGCCTCTCCATCACCTCGAAAGCGCCAAAAAGAGACTTCCC
CTCGGATGCAGATGGGAAAGCGATGGCAGTCGCCAGTGACTAAAAGTAGTAGAAGGAGGAGAAG
TCCTTCCCCACCTCCTGCCAGAAGACGACGATCTCCTTCTCCAGCCCCTCCTCCCCCTCCTCCC
CCACCTCCTCGGCGGCGCAGATCTCCCACCCCACCACCACGACGAAGGACCCCTTCTCCTCCCC
CACGCCGCCGCTCACCGTCTCCAAGAAGATACTCTCCTCCCATCCAGAGGAGATACTCTCCTTC
CCCACCTCCAAAGAGGAGAACTGCCTCGCCCCCACCCCCACCCAAGCGAAGGGCATCGCCATCT
CCTCCACCAAAGCGCCGGGTTTCCCACTCTCCACCTCCTAAACAAAGAAGCCCCCCAGTCACCA
AGAGACGCTCACCCTCCTTATCTTCAAAGCATAGGAAAGGGTCTTCCCCAGGCCGCTCCACTCG
GGAGGCCCGGTCACCACAACCAAACAAAAGGCACTCGCCCTCACCACGACCTCGGGCGCCTCAG
ACCTCAAGCCCTCCCCCTGTTCGAAGAGGAGCTTCAGCGTCTCCCCAAGGAAGGCAGTCCCCGT
CTCCGAGTACTAGGCCTATTAGGAGAGTCTCCAGGACTCCGGAACCCAAAAAGATAAAAAAGGC
TGCCTCACCAAGCCCTCAGTCCGTAAGAAGGGTTTCATCTTCCCGCTCTGTCTCTGGATCTCCT
GAGCCAACAGCTAAAAAGCCTCCAGCACCCCCCTCTCCTGTGCAGTCTCAGTCACCCTCCACAA
ACTGGTCACCTGCAGCACCAGCCAAGAAGGCTAAAAGCCCAACACCAAGCCCGTCCCCTGCCAG
GAATTCTGATCAAGAAGGAGGTGGAAAGAAGAAGAAGAAGAAGAAGGACAAGAAACATAAGAAG
GATAAGAAACACAAGAAGCACAAAAAACACAAGAAGGAGAAGGCTGTGGCCGTAGCCACCCCAG
CTCCTGCTGCCCCTGCAGCTGTCTCTGCTGCCGCCACTCCATCAGCCCAGGAAGAGCCTGCGGC
AGCACCAGAGCCCAGGAAGGAGACTGAGAGTGAAGCTGAAGATGACAACCTTGATGACTTAGAG
AGGCACCTTCGGGAGAAGGCCCTTCGATCCATGCGGAAGGCCCAAGTGTCCCCACAGTCCTAGG
CGGACATGTTTGTTACGTTGTAAATTTTATTTGGTTTGTACTCAATTCAATTTCAAAATTGCTA
AAATGTGTTTGAGCTTTAGACTATAACATTTGTTGTAATAATTGCTAGGTTGAAGTTCACCATG
TTAAAAAAGGGGGGCATGGATTTACATTACAAAGGTGTCCACGGTGTATTAGTGACAATTCTTC
CATTGACATTTAGAGTGAAATATTTTAAGCCAAAAAAAAATCTCTTTTTTAAAAAAGGGGGTTT
GAATATTGTTGGCATTTTTGTGGTTCCTTTAAATGCCCTCGCCTCTCCCAAAAGGTTGGGGTCT
TTTCTTTTTCTCCCTATTCTCTTGAATCTTAGCACCCATGTAAATTATGCTTCCAACCTTGTAT
AGGTTTGTAAGCTTGCCCAGAAGTGAGAGCACTGTTGAAGTACCACAGAGGTTTGGGCGAGTGA
GTGTTGACTCTGTTGCCCATGGAGTCTGCTGTCCTGGCAGCATCCCAGCTCTAGAGCGCCGCAC
TCCTGAGCTACAGGGCTGCCCCATGGAACAGTTCCTAAACTGACTAGGAACTCTGGGTTTTCTC
CTTCCGGTTGTGTTGTTTTGTTTCCTTCTCCCCTTTTCTTCCTCTTTTGTAAAGGCGATTCACT
AGACCCAGGAAGGACCCTTCAGTTACATAAATTTGTTTTATGAAACATGGTGGCTCCCATTCAT
GGTTTCCCTTACTCTTCCAATTGGTACACACAACTGAGGAGCTCCTGTATTTGGCCGGCTGGAA
GGGCCTGGACAGTGTCTTGATTTCACTTGTTTTATTTTATTTTATTTTTTAACTAAAGCTATAT
AAAGCTTGTGGATTAAACAGAATAAATTTCTAAATTTAAGAA

hide sequence

RefSeq Acc Id:

XM_017593406 ⟹ XP_017448895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,548 (-)	NCBI
mRatBN7.2	5	147,559,515 - 147,591,895 (-)	NCBI
Rnor_6.0	5	153,675,622 - 153,708,187 (-)	NCBI

Sequence:

show sequence

AGCATCCCGGCGCTGGGCTCCCCTCTGCCGGTCCCGCCCTCCGTCGCGGCGGCGCGGTGCACAC
TGGGATAGGGAGCGATCTCCGAGCGAGGCAGCAAGATGGACGCGGGATTCTTCCGCGGAACAAG
TGCGGAGCAGGATAATCGATTCAGCAACAAACAGAAGAAACTCCTCAAGCAGCTGAAATTTGCA
GAATGTCTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGTTATAAAGCCTTGGATAA
CAAAAAGAGTGACTGAGATCCTTGGATTCGAAGATGATGTTGTGATTGAGTTTATATTCAACCA
GCTGGAAGTGAAGAACCCAGATTCCAAAATGATGCAAATCAACCTGACTGGATTTTTGAATGGG
AAGAATGCTAGAGAGTTCATGGGAGAACTGTGGCCTCTGCTGTTAAGTGCACAAGAAAATATCG
CCGGAATCCCTTCTGCTTTCCTAGAGTTGAAGAAGGAAGAGATAAAGCAGAGACAAATTGAACA
AGAAAAATTGGCGTCTCTGAAAAAACAAGATGAAGATAAAGATAAGAGGGATAAGGAAGAAAAA
GAAAGCAGCAGAGAGAAGAGGGAGCGGTCTCGCAGCCCAAGAAGAACCAAGAGCCGGAGCCCTT
CCCCTGCCCCAGAAAAGAAGGAGAAATCTCCAGAGCTCCCAGAACCATCAGTGAGAATGAAAGA
CTCTTCAGTACAAGAGGCCACATCTACAAGTGACATCTTGAAAGCTCCCAAGCCTGAGCCTGTA
CCAGAGCCCAAAGAACCATCTCCAGAAAAAAATTCCAAAAAGGAAAAGGAAAAGACTCGACCAA
GATCTCGGTCACGTTCCAAATCACGGTCCCGGACTCGTTCTCGGTCACCTTCTCATACGAGACC
CAGACGGCGACATAGATCCCGATCAAGATCATACTCTCCTAGAAGGCGACCAAGCCCCAGACGA
CGACCATCTCCCCGAAGAAGAACTCCACCAAGACGGATGCCTCCTCCACCACGGCACAGGAGGA
GTAGGTCTCCAGGGAGACGAAGGAGACGTTCTTCCGCATCGCTGTCTGGAAGTAGCTCGTCGTC
CTCTTCATCTCGTTCCCGGTCACCGCCAAAGAAGCCTCCCAAGAGGACATCCAGCCCTCCTCGG
AAAACTCGTAGGTTATCACCTTCGGCAAGTCCTCCGAGGCGAAGGCACCGGCCGTCATCTCCAG
CAACTCCGCCACCCAAAACTCGCCATTCCCCAACTCCCCAGCAGTCAAACCGTGCAAGAAAAAG
TCGTGTGTCTGTGTCTCCAGGAAGAACCTCGGGTAAAGTGACAAAACATAAAGGCACTGAGAAA
AGAGAGTCACCTTCTCCAGCACCCAAGCCTAGAAAAGTGGAGCTGTCTGAGTCTGAGGAAGACA
AAGGCAGCAAAATGGCTGCAGCTGATTCTGTGCAGCAGAGGCGACAATATAGACGACAGAACCA
GCAGTCTTCATCTGACTCTGGCTCCTCTTCCACCTCAGAAGATGAGCGGCCCAAGAGATCCCAT
GTGAAGAATGGTGAGGTAGGCAGGCGGCGGAGACATTCTCCTTCTCGGAGTGCCTCTCCATCAC
CTCGAAAGCGCCAAAAAGAGACTTCCCCTCGGATGCAGATGGGAAAGCGATGGCAGTCGCCAGT
GACTAAAAGTAGTAGAAGGAGGAGAAGTCCTTCCCCACCTCCTGCCAGAAGACGACGATCTCCT
TCTCCAGCCCCTCCTCCCCCTCCTCCCCCACCTCCTCGGCGGCGCAGATCTCCCACCCCACCAC
CACGACGAAGGACCCCTTCTCCTCCCCCACGCCGCCGCTCACCGTCTCCAAGAAGATACTCTCC
TCCCATCCAGAGGAGATACTCTCCTTCCCCACCTCCAAAGAGGAGAACTGCCTCGCCCCCACCC
CCACCCAAGCGAAGGGCATCGCCATCTCCTCCACCAAAGCGCCGGGTTTCCCACTCTCCACCTC
CTAAACAAAGAAGCCCCCCAGTCACCAAGAGACGCTCACCCTCCTTATCTTCAAAGCATAGGAA
AGGGTCTTCCCCAGGCCGCTCCACTCGGGAGGCCCGGTCACCACAACCAAACAAAAGGCACTCG
CCCTCACCACGACCTCGGGCGCCTCAGACCTCAAGCCCTCCCCCTGTTCGAAGAGGAGCTTCAG
CGTCTCCCCAAGGAAGGCAGTCCCCGTCTCCGAGTACTAGGCCTATTAGGAGAGTCTCCAGGAC
TCCGGAACCCAAAAAGATAAAAAAGGCTGCCTCACCAAGCCCTCAGTCCGTAAGAAGGGTTTCA
TCTTCCCGCTCTGTCTCTGGATCTCCTGAGCCAACAGCTAAAAAGCCTCCAGCACCCCCCTCTC
CTGTGCAGTCTCAGTCACCCTCCACAAACTGGTCACCTGCAGCACCAGCCAAGAAGGCTAAAAG
CCCAACACCAAGCCCGTCCCCTGCCAGGAATTCTGATCAAGAAGGAGGTGGAAAGAAGAAGAAG
AAGAAGAAGGACAAGAAACATAAGAAGGATAAGAAACACAAGAAGCACAAAAAACACAAGAAGG
AGAAGGCTGTGGCCGTAGCCACCCCAGCTCCTGCTGCCCCTGCAGCTGTCTCTGCTGCCGCCAC
TCCATCAGCCCAGGAAGAGCCTGCGGCAGCACCAGAGCCCAGGAAGGAGACTGAGAGTGAAGCT
GAAGATGACAACCTTGATGACTTAGAGAGGCACCTTCGGGAGAAGGCCCTTCGATCCATGCGGA
AGGCCCAAGTGTCCCCACAGTCCTAGGCGGACATGTTTGTTACGTTGTAAATTTTATTTGGTTT
GTACTCAATTCAATTTCAAAATTGCTAAAATGTGTTTGAGCTTTAGACTATAACATTTGTTGTA
ATAATTGCTAGGTTGAAGTTCACCATGTTAAAAAAGGGGGGCATGGATTTACATTACAAAGGTG
TCCACGGTGTATTAGTGACAATTCTTCCATTGACATTTAGAGTGAAATATTTTAAGCCAAAAAA
AAATCTCTTTTTTAAAAAAGGGGGTTTGAATATTGTTGGCATTTTTGTGGTTCCTTTAAATGCC
CTCGCCTCTCCCAAAAGGTTGGGGTCTTTTCTTTTTCTCCCTATTCTCTTGAATCTTAGCACCC
ATGTAAATTATGCTTCCAACCTTGTATAGGTTTGTAAGCTTGCCCAGAAGTGAGAGCACTGTTG
AAGTACCACAGAGGTTTGGGCGAGTGAGTGTTGACTCTGTTGCCCATGGAGTCTGCTGTCCTGG
CAGCATCCCAGCTCTAGAGCGCCGCACTCCTGAGCTACAGGGCTGCCCCATGGAACAGTTCCTA
AACTGACTAGGAACTCTGGGTTTTCTCCTTCCGGTTGTGTTGTTTTGTTTCCTTCTCCCCTTTT
CTTCCTCTTTTGTAAAGGCGATTCACTAGACCCAGGAAGGACCCTTCAGTTACATAAATTTGTT
TTATGAAACATGGTGGCTCCCATTCATGGTTTCCCTTACTCTTCCAATTGGTACACACAACTGA
GGAGCTCCTGTATTTGGCCGGCTGGAAGGGCCTGGACAGTGTCTTGATTTCACTTGTTTTATTT
TATTTTATTTTTTAACTAAAGCTATATAAAGCTTGTGGATTAAACAGAATAAATTTCTAAATTT
AA

hide sequence

RefSeq Acc Id:

XM_017593407 ⟹ XP_017448896

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,870,445 (-)	NCBI
mRatBN7.2	5	147,559,515 - 147,591,814 (-)	NCBI
Rnor_6.0	5	153,675,622 - 153,708,115 (-)	NCBI

Sequence:

show sequence

GGAGCGATCTCCGAGCGAGGCAGCAAGATGGACGCGGGATTCTTCCGCGGAACAAGTGCGGAGC
AGGATAATCGATTCAGCAACAAACAGAAGAAACTCCTCAAGCAGCTGAAATTTGCAGAATGTCT
AGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGTTATAAAGCCTTGGATAACAAAAAGA
GTGACTGAGATCCTTGGATTCGAAGATGATGTTGTGATTGAGTTTATATTCAACCAGCTGGAAG
TGAAGGCCTGAACCAAAATGGAAGTTATTCCTTGCGTCTGAAGTATAGCACCATCACCTTATTA
GGTCACAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGACGCAGTGTGTG
TTTGGAGGTGAGTTGTGTAAAGTGGCCAAACATCAACAACAACAACAAAAACACAAACAAGAGC
AATTGGTAAAGCTGTATACTGCTCTTTAAAGTAGCATTTTGAGGTGGACATGTATTTGAAGCAT
GAGGGGCGATTCTGATTTGATTGGATGTTGCTTTTAAAAGAACTAAAGACTTAAGTTGTAGTTG
CAAGTCAGCTGGTTACCAGTTAGAATTAAGGCACAGGATTTTATTTACATTATAGTAAAATTTC
AGGCAGATAACTTGACAGTCCTAGAAAAGCCAGTTAACATGATTGTTCCTATCTTCCAATATTA
AATAATACAAGATATTACAGCTGATGTTTAAACCATTTCTGTTATAACATAGTTTGCTGTTTTG
TCATGGCATCCCAAGGACAGTAAAGATGTACCATAAAACCTTTTGGTAAATCACTGATGGGAAT
TTACTTTTACATTACTCCTCTTCCCAAGAGTTCATGCTTGAATTCTGACAGAACAGTTACCATT
CCAAACGATAAGGTATTTCATTTTTAAAACAATGTGGTAATTATTTTGCTTTGAATATTTCTTA
AGACTTAATTTTAAGAAAGGACTTTATACTTAAGTATATTTATTTCATTTAGAAACCAGAAACA
TGGGAGACTGTTTTATAAATGCTTAATAGTAAACTTTATTGGAGAAATGCTTTATTGATTTGAA
TTTTAGTACACTTTAAAACCTAAATATCTGGTAGTATTCCCCTTGTAGTGAGCATGAGATTAAA
GTTTAGAACTTTTTAAACAATCTTTTCTTTTTTTGTGGTTGTGTACTCATTATTGCTTGTTCGT
CTTTTGCAATTTAGATAAATGATATAACATTAAACTCAAGGTGGTTGAGTTGCAGTAGGGAGTC
GGAAGCAAGCCAAGGGAACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTC
CAAGAAGAAACTGAAGACACCTGGAATCTGTACTTGCTTTGTGCTATTGAGCTGTGCTTGTTAT
ACGGACCTTGTTGCTTGACCAACAGACCTAGTGTTTAAAAACCCACATTACTTTTAGAAATCTT
GACTCCTAGTTTTGTGGACAGTTGAGCATCTGTGGCATTGCTAGTAATAGGTTTCCATGTGCAG
TAGTCAGGCTTCTAGCTTAGTCTTCAGATGTTACAGACTGCATGCATAACCTGTTAGTTCTTGT
AACTGAACACTAGATAATAGACAGTTTACAGAAAGTTACCGTAGTGTAAAGAGAAGTGTCTATG
TACGTTTTCAACTTCTTGTTGGGGCAAGTTTTCCAGCCAAGCAAGTATTGTTAGTAAGTGCTAG
AATGTATAGTGTTTGTTCCATGATTGTCTTTAAAGTTGATAACTACATGAGGCCCACTAACAGC
CACACAGTCTAAATACTTAAGGAAACCCACAAAGGCTGCTCTAATGCTTTTGGTTCAGTGAGGG
AAATTTTGATTATCTAGAAATTATATCACCAAGAAGCAAGTAGGGAGCATATATATTTGTATAT
ATGTACCTAAGCCCCTTATGGTAGACTTAAATACTAATTTACGTGAGTTTCAGGTTGGTTCGTT
GGTTTTGAAGTAACCTGGTTTTCTTCCTGTCATGTCTTTTCGCAGAACCCAGATTCCAAAATGA
TGCAAATCAACCTGACTGGATTTTTGAATGGGAAGAATGCTAGAGAGTTCATGGGAGAACTGTG
GCCTCTGCTGTTAAGTGCACAAGAAAATATCGCCGGAATCCCTTCTGCTTTCCTAGAGTTGAAG
AAGGAAGAGATAAAGCAGAGACAAATTGAACAAGAAAAATTGGCGTCTCTGAAAAAACAAGATG
AAGATAAAGATAAGAGGGATAAGGAAGAAAAAGAAAGCAGCAGAGAGAAGAGGGAGCGGTCTCG
CAGCCCAAGAAGACGCAAATCCAGATCTCCTTCCCCTAGAAGACGATCTTCCCCTGTCAGGAGA
GAGAGAAAGCGCAGTCACTCTCGATCTCCCCGTCACAGAACCAAGAGCCGGAGCCCTTCCCCTG
CCCCAGAAAAGAAGGAGAAATCTCCAGAGCTCCCAGAACCATCAGTGAGAATGAAAGACTCTTC
AGTACAAGAGGCCACATCTACAAGTGACATCTTGAAAGCTCCCAAGCCTGAGCCTGTACCAGAG
CCCAAAGAACCATCTCCAGAAAAAAATTCCAAAAAGGAAAAGGAAAAGACTCGACCAAGATCTC
GGTCACGTTCCAAATCACGGTCCCGGACTCGTTCTCGGTCACCTTCTCATACGAGACCCAGACG
GCGACATAGATCCCGATCAAGATCATACTCTCCTAGAAGGCGACCAAGCCCCAGACGACGACCA
TCTCCCCGAAGAAGAACTCCACCAAGACGGATGCCTCCTCCACCACGGCACAGGAGGAGTAGGT
CTCCAGGGAGACGAAGGAGACGTTCTTCCGCATCGCTGTCTGGAAGTAGCTCGTCGTCCTCTTC
ATCTCGTTCCCGGTCACCGCCAAAGAAGCCTCCCAAGAGGACATCCAGCCCTCCTCGGAAAACT
CGTAGGTTATCACCTTCGGCAAGTCCTCCGAGGCGAAGGCACCGGCCGTCATCTCCAGCAACTC
CGCCACCCAAAACTCGCCATTCCCCAACTCCCCAGCAGTCAAACCGTGCAAGAAAAAGTCGTGT
GTCTGTGTCTCCAGGAAGAACCTCGGGTAAAGTGACAAAACATAAAGGCACTGAGAAAAGAGAG
TCACCTTCTCCAGCACCCAAGCCTAGAAAAGTGGAGCTGTCTGAGTCTGAGGAAGACAAAGGCA
GCAAAATGGCTGCAGCTGATTCTGTGCAGCAGAGGCGACAATATAGACGACAGAACCAGCAGTC
TTCATCTGACTCTGGCTCCTCTTCCACCTCAGAAGATGAGCGGCCCAAGAGATCCCATGTGAAG
AATGGTGAGGTAGGCAGGCGGCGGAGACATTCTCCTTCTCGGAGTGCCTCTCCATCACCTCGAA
AGCGCCAAAAAGAGACTTCCCCTCGGATGCAGATGGGAAAGCGATGGCAGTCGCCAGTGACTAA
AAGTAGTAGAAGGAGGAGAAGTCCTTCCCCACCTCCTGCCAGAAGACGACGATCTCCTTCTCCA
GCCCCTCCTCCCCCTCCTCCCCCACCTCCTCGGCGGCGCAGATCTCCCACCCCACCACCACGAC
GAAGGACCCCTTCTCCTCCCCCACGCCGCCGCTCACCGTCTCCAAGAAGATACTCTCCTCCCAT
CCAGAGGAGATACTCTCCTTCCCCACCTCCAAAGAGGAGAACTGCCTCGCCCCCACCCCCACCC
AAGCGAAGGGCATCGCCATCTCCTCCACCAAAGCGCCGGGTTTCCCACTCTCCACCTCCTAAAC
AAAGAAGCCCCCCAGTCACCAAGAGACGCTCACCCTCCTTATCTTCAAAGCATAGGAAAGGGTC
TTCCCCAGGCCGCTCCACTCGGGAGGCCCGGTCACCACAACCAAACAAAAGGCACTCGCCCTCA
CCACGACCTCGGGCGCCTCAGACCTCAAGCCCTCCCCCTGTTCGAAGAGGAGCTTCAGCGTCTC
CCCAAGGAAGGCAGTCCCCGTCTCCGAGTACTAGGCCTATTAGGAGAGTCTCCAGGACTCCGGA
ACCCAAAAAGATAAAAAAGGCTGCCTCACCAAGCCCTCAGTCCGTAAGAAGGGTTTCATCTTCC
CGCTCTGTCTCTGGATCTCCTGAGCCAACAGCTAAAAAGCCTCCAGCACCCCCCTCTCCTGTGC
AGTCTCAGTCACCCTCCACAAACTGGTCACCTGCAGCACCAGCCAAGAAGGCTAAAAGCCCAAC
ACCAAGCCCGTCCCCTGCCAGGAATTCTGATCAAGAAGGAGGTGGAAAGAAGAAGAAGAAGAAG
AAGGACAAGAAACATAAGAAGGATAAGAAACACAAGAAGCACAAAAAACACAAGAAGGAGAAGG
CTGTGGCCGTAGCCACCCCAGCTCCTGCTGCCCCTGCAGCTGTCTCTGCTGCCGCCACTCCATC
AGCCCAGGAAGAGCCTGCGGCAGCACCAGAGCCCAGGAAGGAGACTGAGAGTGAAGCTGAAGAT
GACAACCTTGATGACTTAGAGAGGCACCTTCGGGAGAAGGCCCTTCGATCCATGCGGAAGGCCC
AAGTGTCCCCACAGTCCTAGGCGGACATGTTTGTTACGTTGTAAATTTTATTTGGTTTGTACTC
AATTCAATTTCAAAATTGCTAAAATGTGTTTGAGCTTTAGACTATAACATTTGTTGTAATAATT
GCTAGGTTGAAGTTCACCATGTTAAAAAAGGGGGGCATGGATTTACATTACAAAGGTGTCCACG
GTGTATTAGTGACAATTCTTCCATTGACATTTAGAGTGAAATATTTTAAGCCAAAAAAAAATCT
CTTTTTTAAAAAAGGGGGTTTGAATATTGTTGGCATTTTTGTGGTTCCTTTAAATGCCCTCGCC
TCTCCCAAAAGGTTGGGGTCTTTTCTTTTTCTCCCTATTCTCTTGAATCTTAGCACCCATGTAA
ATTATGCTTCCAACCTTGTATAGGTTTGTAAGCTTGCCCAGAAGTGAGAGCACTGTTGAAGTAC
CACAGAGGTTTGGGCGAGTGAGTGTTGACTCTGTTGCCCATGGAGTCTGCTGTCCTGGCAGCAT
CCCAGCTCTAGAGCGCCGCACTCCTGAGCTACAGGGCTGCCCCATGGAACAGTTCCTAAACTGA
CTAGGAACTCTGGGTTTTCTCCTTCCGGTTGTGTTGTTTTGTTTCCTTCTCCCCTTTTCTTCCT
CTTTTGTAAAGGCGATTCACTAGACCCAGGAAGGACCCTTCAGTTACATAAATTTGTTTTATGA
AACATGGTGGCTCCCATTCATGGTTTCCCTTACTCTTCCAATTGGTACACACAACTGAGGAGCT
CCTGTATTTGGCCGGCTGGAAGGGCCTGGACAGTGTCTTGATTTCACTTGTTTTATTTTATTTT
ATTTTTTAACTAAAGCTATATAAAGCTTGTGGATTAAACAGAATAAATTTCTAAATTTAA

hide sequence

RefSeq Acc Id:

XM_039110050 ⟹ XP_038965978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,554 (-)	NCBI
mRatBN7.2	5	147,559,515 - 147,591,895 (-)	NCBI

RefSeq Acc Id:

XM_039110051 ⟹ XP_038965979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,554 (-)	NCBI
mRatBN7.2	5	147,559,515 - 147,591,895 (-)	NCBI

RefSeq Acc Id:

XM_039110052 ⟹ XP_038965980

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,548 (-)	NCBI
mRatBN7.2	5	147,559,515 - 147,591,895 (-)	NCBI

RefSeq Acc Id:

XM_063287766 ⟹ XP_063143836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,554 (-)	NCBI

RefSeq Acc Id:

XM_063287767 ⟹ XP_063143837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,548 (-)	NCBI

RefSeq Acc Id:

XM_063287768 ⟹ XP_063143838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,548 (-)	NCBI

RefSeq Acc Id:

XM_063287769 ⟹ XP_063143839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,548 (-)	NCBI

RefSeq Acc Id:

XM_063287770 ⟹ XP_063143840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,875,267 (-)	NCBI

RefSeq Acc Id:

XM_063287771 ⟹ XP_063143841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,870,445 (-)	NCBI

RefSeq Acc Id:

XM_063287772 ⟹ XP_063143842

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,843,167 - 152,870,445 (-)	NCBI

RefSeq Acc Id:

XM_063287773 ⟹ XP_063143843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	152,855,797 - 152,875,554 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101456	(Get FASTA)	NCBI Sequence Viewer
	NP_001423761	(Get FASTA)	NCBI Sequence Viewer
	NP_001423762	(Get FASTA)	NCBI Sequence Viewer
	NP_001423763	(Get FASTA)	NCBI Sequence Viewer
	NP_001423764	(Get FASTA)	NCBI Sequence Viewer
	NP_001423765	(Get FASTA)	NCBI Sequence Viewer
	NP_001423766	(Get FASTA)	NCBI Sequence Viewer
	NP_001423767	(Get FASTA)	NCBI Sequence Viewer
	NP_001423768	(Get FASTA)	NCBI Sequence Viewer
	NP_001423769	(Get FASTA)	NCBI Sequence Viewer
	NP_001423770	(Get FASTA)	NCBI Sequence Viewer
	XP_006239244	(Get FASTA)	NCBI Sequence Viewer
	XP_006239245	(Get FASTA)	NCBI Sequence Viewer
	XP_006239246	(Get FASTA)	NCBI Sequence Viewer
	XP_006239247	(Get FASTA)	NCBI Sequence Viewer
	XP_008762464	(Get FASTA)	NCBI Sequence Viewer
	XP_017448895	(Get FASTA)	NCBI Sequence Viewer
	XP_017448896	(Get FASTA)	NCBI Sequence Viewer
	XP_038965978	(Get FASTA)	NCBI Sequence Viewer
	XP_038965979	(Get FASTA)	NCBI Sequence Viewer
	XP_038965980	(Get FASTA)	NCBI Sequence Viewer
	XP_063143836	(Get FASTA)	NCBI Sequence Viewer
	XP_063143837	(Get FASTA)	NCBI Sequence Viewer
	XP_063143838	(Get FASTA)	NCBI Sequence Viewer
	XP_063143839	(Get FASTA)	NCBI Sequence Viewer
	XP_063143840	(Get FASTA)	NCBI Sequence Viewer
	XP_063143841	(Get FASTA)	NCBI Sequence Viewer
	XP_063143842	(Get FASTA)	NCBI Sequence Viewer
	XP_063143843	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66715	(Get FASTA)	NCBI Sequence Viewer
	EDL80752	(Get FASTA)	NCBI Sequence Viewer
	EDL80753	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052955
	ENSRNOP00000052955.4
	ENSRNOP00000073024
	ENSRNOP00000073024.3
	ENSRNOP00000082336
	ENSRNOP00000082336.2
	ENSRNOP00000097970
	ENSRNOP00000097970.2

RefSeq Acc Id:

NP_001101456 ⟸ NM_001107986

- UniProtKB:

B2RYB3 (UniProtKB/TrEMBL), A0A8I6ATQ3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFED
DVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKK
EEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRE
RKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEP
KEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPS
PRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTR
RLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRES
PSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKN
GEVGRRRRHSPSRSASPSPRKRQKETSPRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRS
PTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVS
HSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVR
RGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPP
APPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHK
KHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPAAAPEPRKETESEAEDDNLDDLERHLREKAL
RSMRKAQVSPQS

hide sequence

RefSeq Acc Id:	XP_006239246 ⟸ XM_006239184
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6ATQ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFED DVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKK EEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRE RKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEP KEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPS PRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTR RLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRES PSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSEDERPKRSHVKNGEVGRRRR HSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPP PRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPP PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTS SPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP TAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDK KHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPAAAPEPRKETESEAEDDNLDDLERH LREKALRSMRKAQVSPQS hide sequence

RefSeq Acc Id:

XP_006239245 ⟸ XM_006239183

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFED
DVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKK
EEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRE
RKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEP
KEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPS
PRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTR
RLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRES
PSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKN
GEVGRRRRHSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSRRRRSPSPPPARRRRSPSPAP
PPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR
RASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR
PRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRS
VSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKD
KKHKKDKKHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPAAAPEPRKETESEAEDDN
LDDLERHLREKALRSMRKAQVSPQS

hide sequence

RefSeq Acc Id:

XP_006239244 ⟸ XM_006239182

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFED
DVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKK
EEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRE
RKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEP
KEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPS
PRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTR
RLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRES
PSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKN
GEVGRRRRHSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPA
PPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPK
RRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSP
RPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSR
SVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKK
DKKHKKDKKHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPAAAPEPRKETESEAEDD
NLDDLERHLREKALRSMRKAQVSPQS

hide sequence

RefSeq Acc Id:

XP_006239247 ⟸ XM_006239185

- Peptide Label:

isoform X5

- Sequence:

show sequence

MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFED
DVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKK
EEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRE
RKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEP
KEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPS
PRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTR
RLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRES
PSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKN
GEVGRRRRHSPSRSASPSPRKRQKETSPRRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSP
TPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSH
SPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRR
GASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA
PPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKK
HKKEKAVAVATPAPAAPAAVSAAATPSAQEEPAAAPEPRKETESEAEDDNLDDLERHLREKALR
SMRKAQVSPQS

hide sequence

RefSeq Acc Id:	XP_008762464 ⟸ XM_008764242
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6ATQ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMG ELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRE RSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSVRMK DSSVQEATSTSDILKAPKPEPVPEPKEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTR PRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSS SSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARK SRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQN QQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRMQMGKRWQSP VTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYS PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHR KGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSR TPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAK SPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAVATPAPAAPAAVSAAA TPSAQEEPAAAPEPRKETESEAEDDNLDDLERHLREKALRSMRKAQVSPQS hide sequence

RefSeq Acc Id:

XP_017448895 ⟸ XM_017593406

- Peptide Label:

isoform X8

- Sequence:

show sequence

MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFED
DVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKK
EEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRERSRSPRRTKSRSPSPAPEKKEKSPE
LPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEPKEPSPEKNSKKEKEKTRPRSRSRSKSRSRT
RSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSS
ASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPT
PQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQ
QRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRM
QMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRR
RSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRR
SPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPS
TRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWS
PAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAVATPAPA
APAAVSAAATPSAQEEPAAAPEPRKETESEAEDDNLDDLERHLREKALRSMRKAQVSPQS

hide sequence

RefSeq Acc Id:	XP_017448896 ⟸ XM_017593407
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I6ATQ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASLKKQ DEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPS PAPEKKEKSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEPKEPSPEKNSKKEKEKTRPR SRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRS RSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPA TPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDK GSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSP RKRQKETSPRMQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPP RRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPP KQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASA SPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSP VQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKE KAVAVATPAPAAPAAVSAAATPSAQEEPAAAPEPRKETESEAEDDNLDDLERHLREKALRSMRK AQVSPQS hide sequence

Ensembl Acc Id:

ENSRNOP00000073024 ⟸ ENSRNOT00000082037

Ensembl Acc Id:

ENSRNOP00000052955 ⟸ ENSRNOT00000056105

RefSeq Acc Id:	XP_038965980 ⟸ XM_039110052
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6ATQ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965979 ⟸ XM_039110051
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038965978 ⟸ XM_039110050
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000082336 ⟸ ENSRNOT00000119442

Ensembl Acc Id:

ENSRNOP00000088781 ⟸ ENSRNOT00000116482

Ensembl Acc Id:

ENSRNOP00000097970 ⟸ ENSRNOT00000096755

RefSeq Acc Id:	XP_063143836 ⟸ XM_063287766
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063143839 ⟸ XM_063287769
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6ATQ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143838 ⟸ XM_063287768
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6ATQ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143837 ⟸ XM_063287767
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063143840 ⟸ XM_063287770
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6ATQ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143841 ⟸ XM_063287771
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I6ATQ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143842 ⟸ XM_063287772
- Peptide Label:	isoform X16
- UniProtKB:	A0A8I6ATQ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143843 ⟸ XM_063287773
- Peptide Label:	isoform X17

Protein Domains

PWI

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K4F6-F1-model_v2	AlphaFold	A0A0G2K4F6	1-912	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694153

Promoter ID:

EPDNEW_R4676

Type:

multiple initiation site

Name:

Srrm1_1

Description:

serine and arginine repetitive matrix 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	153,708,113 - 153,708,173	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311258	AgrOrtholog
BioCyc Gene	G2FUF-39546	BioCyc
Ensembl Genes	ENSRNOG00000018194	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000056105	ENTREZGENE
	ENSRNOT00000056105.5	UniProtKB/TrEMBL
	ENSRNOT00000082037	ENTREZGENE
	ENSRNOT00000082037.3	UniProtKB/TrEMBL
	ENSRNOT00000096755	ENTREZGENE
	ENSRNOT00000096755.2	UniProtKB/TrEMBL
	ENSRNOT00000119442	ENTREZGENE
	ENSRNOT00000119442.2	UniProtKB/TrEMBL
Gene3D-CATH	PWI domain	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7930852	IMAGE-MGC_LOAD
InterPro	PWI	UniProtKB/TrEMBL
	PWI_dom_sf	UniProtKB/TrEMBL
	Ser/Arg_repetitive_matrix	UniProtKB/TrEMBL
KEGG Report	rno:313620	UniProtKB/TrEMBL
MGC_CLONE	MGC:188416	IMAGE-MGC_LOAD
NCBI Gene	313620	ENTREZGENE
PANTHER	SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN	UniProtKB/TrEMBL
	SERINE/ARGININE REPETITIVE MATRIX PROTEIN 1	UniProtKB/TrEMBL
Pfam	PWI	UniProtKB/TrEMBL
PhenoGen	Srrm1	PhenoGen
PROSITE	PWI	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018194	RatGTEx
SMART	PWI	UniProtKB/TrEMBL
Superfamily-SCOP	PWI	UniProtKB/TrEMBL
UniProt	A0A0G2K4F6_RAT	UniProtKB/TrEMBL
	A0A8I5ZV38	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ATQ3	ENTREZGENE, UniProtKB/TrEMBL
	B2RYB3	ENTREZGENE, UniProtKB/TrEMBL
	F7FND9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-16	Srrm1	serine and arginine repetitive matrix 1	Srrm1	serine/arginine repetitive matrix 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Srrm1	serine/arginine repetitive matrix 1	Srrm1_predicted	serine/arginine repetitive matrix 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Srrm1_predicted	serine/arginine repetitive matrix 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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RGD Manual Annotations

Imported Annotations - KEGG (archival)