Katnb1 (katanin regulatory subunit B1) - Rat Genome Database

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Gene: Katnb1 (katanin regulatory subunit B1) Rattus norvegicus
Analyze
Symbol: Katnb1
Name: katanin regulatory subunit B1
RGD ID: 1311256
Description: Predicted to enable ATPase regulator activity; dynein complex binding activity; and protein heterodimerization activity. Involved in microtubule severing; positive regulation of apoptotic process; and positive regulation of neuron projection development. Located in growth cone; midbody; and neuronal cell body. Human ortholog(s) of this gene implicated in lissencephaly 6. Orthologous to human KATNB1 (katanin regulatory subunit B1); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: katanin p80 (WD repeat containing) subunit B 1; katanin p80 (WD40-containing) subunit B 1; katanin p80 WD40 repeat-containing subunit B1; katanin p80 WD40-containing subunit B1; LOC291852
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,927,249 - 9,946,750 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl199,927,249 - 9,946,738 (-)EnsemblGRCr8
mRatBN7.2199,921,216 - 9,940,853 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,921,219 - 9,940,650 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx199,885,262 - 9,902,647 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,652,103 - 10,669,488 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,938,944 - 9,956,376 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,340,027 - 10,360,319 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,340,307 - 10,360,310 (-)Ensemblrn6Rnor6.0
Rnor_5.01910,320,130 - 10,339,578 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41910,355,488 - 10,373,010 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera199,809,407 - 9,826,994 (-)NCBICelera
RGSC_v3.11910,360,314 - 10,377,836 (-)NCBI
Cytogenetic Map19p13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IDA,IEA,ISO)
centrosome  (IEA,ISO)
cytoplasm  (IEA,ISO)
cytoskeleton  (IEA)
cytosol  (IEA,ISO)
growth cone  (IDA)
katanin complex  (IBA,IEA,ISO)
microtubule  (IEA,ISO)
microtubule cytoskeleton  (IEA,ISO)
microtubule organizing center  (IEA)
midbody  (IDA)
neuronal cell body  (IDA)
spindle  (IEA,ISO)
spindle pole  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. LAPSER1 is a putative cytokinetic tumor suppressor that shows the same centrosome and midbody subcellular localization pattern as p80 katanin. Sudo H and Maru Y, FASEB J. 2007 Jul;21(9):2086-100. Epub 2007 Mar 9.
6. Regulation of microtubule severing by katanin subunits during neuronal development. Yu W, etal., J Neurosci. 2005 Jun 8;25(23):5573-83.
Additional References at PubMed
PMID:9568719   PMID:10751153   PMID:12477932   PMID:16203747   PMID:19946888   PMID:21630459   PMID:23904609   PMID:26929214  


Genomics

Comparative Map Data
Katnb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,927,249 - 9,946,750 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl199,927,249 - 9,946,738 (-)EnsemblGRCr8
mRatBN7.2199,921,216 - 9,940,853 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,921,219 - 9,940,650 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx199,885,262 - 9,902,647 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,652,103 - 10,669,488 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,938,944 - 9,956,376 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,340,027 - 10,360,319 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,340,307 - 10,360,310 (-)Ensemblrn6Rnor6.0
Rnor_5.01910,320,130 - 10,339,578 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41910,355,488 - 10,373,010 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera199,809,407 - 9,826,994 (-)NCBICelera
RGSC_v3.11910,360,314 - 10,377,836 (-)NCBI
Cytogenetic Map19p13NCBI
KATNB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,735,770 - 57,757,244 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,735,669 - 57,758,271 (+)Ensemblhg38GRCh38
GRCh371657,769,682 - 57,791,156 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,327,161 - 56,348,663 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341656,328,617 - 56,348,657NCBI
Celera1642,266,969 - 42,288,421 (+)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1643,636,584 - 43,658,036 (+)NCBIHuRef
CHM1_11659,176,440 - 59,197,887 (+)NCBICHM1_1
T2T-CHM13v2.01663,530,976 - 63,552,401 (+)NCBIT2T-CHM13v2.0
Katnb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,807,804 - 95,826,502 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,807,814 - 95,829,777 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38895,081,175 - 95,099,874 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,081,186 - 95,103,149 (+)Ensemblmm10GRCm38
MGSCv37897,605,101 - 97,623,774 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36897,970,330 - 97,989,003 (+)NCBIMGSCv36mm8
Celera899,407,232 - 99,425,928 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map847.12NCBI
Katnb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,345,246 - 15,366,039 (+)Ensembl
ChiLan1.0NW_00495543315,345,246 - 15,365,986 (+)NCBIChiLan1.0ChiLan1.0
KATNB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21867,205,818 - 67,228,247 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11673,126,749 - 73,149,164 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01638,011,804 - 38,034,015 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11657,142,912 - 57,165,426 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1657,143,472 - 57,165,426 (+)EnsemblpanPan2panpan1.1
KATNB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,734,875 - 58,755,515 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,734,893 - 58,755,477 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha255,364,660 - 55,385,336 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0259,273,227 - 59,293,915 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,273,227 - 59,292,927 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,104,955 - 56,125,637 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,112,437 - 57,133,123 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,005,758 - 58,026,434 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Katnb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,831,461 - 49,851,830 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,738,195 - 9,757,614 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,737,974 - 9,757,614 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KATNB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,630,447 - 19,659,043 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1619,630,355 - 19,659,039 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,703,623 - 17,719,166 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KATNB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,666,892 - 43,688,110 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,666,940 - 43,687,807 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604732,491,471 - 32,513,027 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Katnb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,360,730 - 28,381,673 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474628,360,461 - 28,381,545 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Katnb1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1171,954,875 - 1,973,643 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Katnb1
58 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:58
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000019770
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131969901Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124694445Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127361636Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat

Markers in Region
RH140643  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8199,928,335 - 9,928,747 (+)Marker Load Pipeline
mRatBN7.2199,922,302 - 9,922,714 (+)MAPPERmRatBN7.2
Rnor_6.01910,341,114 - 10,341,525NCBIRnor6.0
Rnor_5.01910,321,217 - 10,321,628UniSTSRnor5.0
RGSC_v3.41910,356,295 - 10,356,706UniSTSRGSC3.4
Celera199,810,214 - 9,810,625UniSTS
RH 3.4 Map1993.1UniSTS
Cytogenetic Map19p13UniSTS
AI710639  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2199,921,334 - 9,921,457 (+)MAPPERmRatBN7.2
Rnor_6.01910,340,146 - 10,340,268NCBIRnor6.0
Rnor_5.01910,320,249 - 10,320,371UniSTSRnor5.0
RGSC_v3.41910,355,327 - 10,355,449UniSTSRGSC3.4
Celera199,809,246 - 9,809,368UniSTS
RH 3.4 Map1993.5UniSTS
Cytogenetic Map19p13UniSTS
KATNB1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2199,925,529 - 9,926,349 (+)MAPPERmRatBN7.2
Rnor_6.01910,344,341 - 10,345,160NCBIRnor6.0
Rnor_5.01910,324,444 - 10,325,263UniSTSRnor5.0
RGSC_v3.41910,359,522 - 10,360,341UniSTSRGSC3.4
Celera199,813,441 - 9,814,260UniSTS
Cytogenetic Map19p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000019770   ⟹   ENSRNOP00000019770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl199,921,219 - 9,935,246 (-)Ensembl
Rnor_6.0 Ensembl1910,340,307 - 10,358,695 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087100   ⟹   ENSRNOP00000070102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl199,927,249 - 9,946,738 (-)Ensembl
mRatBN7.2 Ensembl199,921,219 - 9,940,650 (-)Ensembl
Rnor_6.0 Ensembl1910,340,747 - 10,360,310 (-)Ensembl
RefSeq Acc Id: NM_001024746   ⟹   NP_001019917
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,927,249 - 9,946,738 (-)NCBI
mRatBN7.2199,921,216 - 9,940,707 (-)NCBI
Rnor_6.01910,340,307 - 10,358,695 (-)NCBI
Rnor_5.01910,320,130 - 10,339,578 (-)NCBI
RGSC_v3.41910,355,488 - 10,373,010 (-)RGD
Celera199,809,407 - 9,826,994 (-)RGD
Sequence:
RefSeq Acc Id: XM_017601198   ⟹   XP_017456687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,927,249 - 9,946,750 (-)NCBI
mRatBN7.2199,921,216 - 9,940,707 (-)NCBI
Rnor_6.01910,340,027 - 10,360,318 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601200   ⟹   XP_017456689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,927,249 - 9,946,562 (-)NCBI
mRatBN7.2199,921,216 - 9,940,520 (-)NCBI
Rnor_6.01910,340,027 - 10,360,187 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601201   ⟹   XP_017456690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,927,249 - 9,946,750 (-)NCBI
mRatBN7.2199,921,216 - 9,940,707 (-)NCBI
Rnor_6.01910,340,027 - 10,360,319 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063277852   ⟹   XP_063133922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,927,249 - 9,946,690 (-)NCBI
RefSeq Acc Id: XM_063277853   ⟹   XP_063133923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,927,249 - 9,946,599 (-)NCBI
RefSeq Acc Id: XM_063277854   ⟹   XP_063133924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,927,249 - 9,946,737 (-)NCBI
RefSeq Acc Id: XM_063277855   ⟹   XP_063133925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,927,249 - 9,946,750 (-)NCBI
RefSeq Acc Id: XM_063277856   ⟹   XP_063133926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8199,927,249 - 9,946,679 (-)NCBI
RefSeq Acc Id: NP_001019917   ⟸   NM_001024746
- UniProtKB: Q4VFZ4 (UniProtKB/TrEMBL),   B1WBN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456690   ⟸   XM_017601201
- Peptide Label: isoform X2
- UniProtKB: B1WBN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456687   ⟸   XM_017601198
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JX20 (UniProtKB/TrEMBL),   B1WBN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456689   ⟸   XM_017601200
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JX20 (UniProtKB/TrEMBL),   B1WBN6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070102   ⟸   ENSRNOT00000087100
Ensembl Acc Id: ENSRNOP00000019770   ⟸   ENSRNOT00000019770
RefSeq Acc Id: XP_063133925   ⟸   XM_063277855
- Peptide Label: isoform X4
- UniProtKB: B1WBN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133924   ⟸   XM_063277854
- Peptide Label: isoform X3
- UniProtKB: Q4VFZ4 (UniProtKB/TrEMBL),   B1WBN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133922   ⟸   XM_063277852
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JX20 (UniProtKB/TrEMBL),   B1WBN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133926   ⟸   XM_063277856
- Peptide Label: isoform X4
- UniProtKB: B1WBN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133923   ⟸   XM_063277853
- Peptide Label: isoform X3
- UniProtKB: Q4VFZ4 (UniProtKB/TrEMBL),   B1WBN6 (UniProtKB/TrEMBL)
Protein Domains
Katanin p80 subunit C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4VFZ4-F1-model_v2 AlphaFold Q4VFZ4 1-655 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700955
Promoter ID:EPDNEW_R11457
Type:initiation region
Name:Katnb1_1
Description:katanin regulatory subunit B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01910,360,221 - 10,360,281EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311256 AgrOrtholog
BioCyc Gene G2FUF-6524 BioCyc
Ensembl Genes ENSRNOG00000014626 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087100 ENTREZGENE
  ENSRNOT00000087100.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9102535 IMAGE-MGC_LOAD
InterPro G-protein_beta_WD-40_rep_reg UniProtKB/TrEMBL
  Katanin_bsu1 UniProtKB/TrEMBL
  Katanin_C-terminal UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:291852 UniProtKB/TrEMBL
MGC_CLONE MGC:187277 IMAGE-MGC_LOAD
NCBI Gene 291852 ENTREZGENE
PANTHER KATANIN P80 SUBUNIT UniProtKB/TrEMBL
  KATANIN P80 WD40 REPEAT-CONTAINING SUBUNIT B1 UniProtKB/TrEMBL
Pfam Katanin_con80 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PharmGKB KATNB1 RGD
PhenoGen Katnb1 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014626 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A0G2JX20 ENTREZGENE, UniProtKB/TrEMBL
  A6JY28_RAT UniProtKB/TrEMBL
  B1WBN6 ENTREZGENE, UniProtKB/TrEMBL
  Q4VFZ4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 Katnb1  katanin regulatory subunit B1  Katnb1  katanin p80 (WD repeat containing) subunit B 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-17 Katnb1  katanin p80 (WD repeat containing) subunit B 1  Katnb1  katanin p80 (WD40-containing) subunit B 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Katnb1  katanin p80 (WD40-containing) subunit B 1  Katnb1_predicted  katanin p80 (WD40-containing) subunit B 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Katnb1_predicted  katanin p80 (WD40-containing) subunit B 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED