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Gene: Mier3 (MIER family member 3) Rattus norvegicus

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Symbol:

Mier3

Name:

MIER family member 3

RGD ID:

1311241

Description:

Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of protein-containing complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in breast cancer and lung adenocarcinoma. Orthologous to human MIER3 (MIER family member 3); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC310086; mesoderm induction early response 1, family member 3; mesoderm induction early response protein 3; RGD1311241; similar to RIKEN cDNA D130064H19

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MIER3 (MIER family member 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mier3 (MIER family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mier3 (MIER family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MIER3 (MIER family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MIER3 (MIER family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mier3 (MIER family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MIER3 (MIER family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MIER3 (MIER family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mier3 (MIER family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Mier3 (MIER family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Mier3 (MIER family member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MIER3 (MIER family member 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mier3b (mesoderm induction early response 1, family member 3 b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mier3b (mesoderm induction early response 1, family member 3 b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	mier3a (mesoderm induction early response 1, family member 3 a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1620	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1620	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F10E7.11	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F10E7.11	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	T07F8.4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mier3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mier3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	45,021,167 - 45,049,745 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	45,021,283 - 45,049,745 (+)	Ensembl				GRCr8
mRatBN7.2	2	43,287,546 - 43,316,422 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	43,287,916 - 43,316,136 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	50,408,447 - 50,432,200 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	48,466,902 - 48,490,655 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	43,318,416 - 43,342,169 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	43,266,301 - 43,295,175 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	43,266,739 - 43,294,889 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	62,313,119 - 62,341,562 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	43,003,828 - 43,027,625 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	39,077,974 - 39,101,738 (+)	NCBI		Celera
RGSC_v3.1	2	42,924,292 - 42,953,309 (+)	NCBI
Cytogenetic Map	2	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast cancer (ISO)

invasive ductal carcinoma (ISO)

lung adenocarcinoma (ISO)

lung non-small cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

3,3',5-triiodo-L-thyronine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

choline (ISO)

coumarin (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

L-methionine (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

phenobarbital (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

SB 431542 (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (IBA,IEA,ISO)

nucleus (IEA,ISO)

protein-containing complex (IEA,ISO)

Molecular Function

histone deacetylase activity (ISO)

histone deacetylase binding (IBA)

protein binding (ISO)

transcription corepressor activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat Mcs1b is concordant to the genome-wide association-identified breast cancer risk locus at human 5q11.2 and MIER3 is a candidate cancer susceptibility gene.	denDekker AD, etal., Cancer Res. 2012 Nov 15;72(22):6002-12. doi: 10.1158/0008-5472.CAN-12-0748. Epub 2012 Sep 19.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	MIER3 induces epithelial-mesenchymal transition and promotes breast cancer cell aggressiveness via forming a co-repressor complex with HDAC1/HDAC2/Snail.	Huang W, etal., Exp Cell Res. 2021 Sep 1;406(1):112722. doi: 10.1016/j.yexcr.2021.112722. Epub 2021 Jul 6.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	MIER3 suppresses the progression of non-small cell lung cancer by inhibiting Wnt/β-Catenin pathway and histone acetyltransferase activity.	Zhang H, etal., Transl Cancer Res. 2020 Jan;9(1):346-357. doi: 10.21037/tcr.2020.01.07.

Additional References at PubMed

PMID:28046085

Genomics

Comparative Map Data

Mier3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	45,021,167 - 45,049,745 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	45,021,283 - 45,049,745 (+)	Ensembl				GRCr8
mRatBN7.2	2	43,287,546 - 43,316,422 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	43,287,916 - 43,316,136 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	50,408,447 - 50,432,200 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	48,466,902 - 48,490,655 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	43,318,416 - 43,342,169 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	43,266,301 - 43,295,175 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	43,266,739 - 43,294,889 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	62,313,119 - 62,341,562 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	43,003,828 - 43,027,625 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	39,077,974 - 39,101,738 (+)	NCBI		Celera
RGSC_v3.1	2	42,924,292 - 42,953,309 (+)	NCBI
Cytogenetic Map	2	q14	NCBI

MIER3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	56,919,603 - 56,952,209 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	56,919,602 - 56,971,675 (-)	Ensembl			hg38	GRCh38
GRCh37	5	56,215,430 - 56,247,950 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	56,251,186 - 56,283,711 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	53,169,638 - 53,202,174 (-)	NCBI		Celera
Cytogenetic Map	5	q11.2	NCBI
HuRef	5	53,187,350 - 53,219,884 (-)	NCBI		HuRef
CHM1_1	5	56,218,436 - 56,250,963 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	57,747,855 - 57,780,385 (-)	NCBI		T2T-CHM13v2.0

Mier3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	111,822,607 - 111,855,130 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	111,817,513 - 111,855,130 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	111,686,073 - 111,718,596 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	111,680,979 - 111,718,596 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	112,476,386 - 112,508,802 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	112,807,229 - 112,838,514 (+)	NCBI		MGSCv36	mm8
Celera	13	116,010,054 - 116,024,988 (+)	NCBI		Celera
Cytogenetic Map	13	D2.2	NCBI
cM Map	13	63.36	NCBI

Mier3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	10,961,436 - 10,992,971 (+)	Ensembl
ChiLan1.0	NW_004955446	10,962,336 - 10,992,645 (+)	NCBI	ChiLan1.0	ChiLan1.0

MIER3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	56,971,837 - 57,004,495 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	55,125,468 - 55,158,126 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	57,060,314 - 57,092,948 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	58,690,719 - 58,722,146 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	58,689,857 - 58,722,146 (+)	Ensembl			panPan2	panpan1.1

MIER3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	44,057,161 - 44,135,210 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	44,060,500 - 44,108,034 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	41,118,466 - 41,196,496 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	44,539,169 - 44,617,541 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	44,539,170 - 44,590,675 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	41,615,980 - 41,694,009 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	42,419,426 - 42,497,469 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	43,239,394 - 43,317,194 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mier3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	202,065,171 - 202,095,395 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	11,002,583 - 11,032,329 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	11,001,964 - 11,031,891 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MIER3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	35,990,469 - 36,025,436 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	35,990,468 - 36,025,424 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	38,256,410 - 38,291,399 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MIER3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	53,144,256 - 53,177,429 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	53,147,773 - 53,172,089 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666049	2,036,468 - 2,069,711 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mier3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	2,162,981 - 2,324,008 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624759	2,060,688 - 2,325,104 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mier3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	185,331,608 - 185,358,278 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mier3
291 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	243
Count of miRNA genes:	139
Interacting mature miRNAs:	189
Transcripts:	ENSRNOT00000017571
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1300160	Hrtrt3	Heart rate QTL 3	3.62		heart pumping trait (VT:2000009)	absolute change in heart rate (CMO:0000534)	2	35614083	53462005	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9685065	Swd6	Spike wave discharge measurement QTL 6	5.8	0.01	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge rate (CMO:0001739)	2	40957423	50526673	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	41801363	104744824	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	2	44904355	85286097	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	44904355	89904355	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

stSG625181

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,314,859 - 43,316,219 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,293,613 - 43,294,972	NCBI	Rnor6.0
Rnor_5.0	2	62,340,000 - 62,341,359	UniSTS	Rnor5.0
RGSC_v3.4	2	43,026,349 - 43,027,708	UniSTS	RGSC3.4
Celera	2	39,100,462 - 39,101,821	UniSTS
Cytogenetic Map	2	q14	UniSTS

stSG625182

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,313,798 - 43,314,879 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,292,552 - 43,293,632	NCBI	Rnor6.0
Rnor_5.0	2	62,338,939 - 62,340,019	UniSTS	Rnor5.0
RGSC_v3.4	2	43,025,288 - 43,026,368	UniSTS	RGSC3.4
Celera	2	39,099,401 - 39,100,481	UniSTS
Cytogenetic Map	2	q14	UniSTS

stSG625183

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,312,680 - 43,313,818 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,291,434 - 43,292,571	NCBI	Rnor6.0
Rnor_5.0	2	62,337,821 - 62,338,958	UniSTS	Rnor5.0
RGSC_v3.4	2	43,024,170 - 43,025,307	UniSTS	RGSC3.4
Celera	2	39,098,282 - 39,099,420	UniSTS
Cytogenetic Map	2	q14	UniSTS

MIER3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,312,384 - 43,312,609 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,291,138 - 43,291,362	NCBI	Rnor6.0
Rnor_5.0	2	62,337,525 - 62,337,749	UniSTS	Rnor5.0
RGSC_v3.4	2	43,023,874 - 43,024,098	UniSTS	RGSC3.4
Celera	2	39,097,986 - 39,098,210	UniSTS
Cytogenetic Map	2	q14	UniSTS

REN28465

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,316,046 - 43,316,307 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,294,800 - 43,295,060	NCBI	Rnor6.0
Rnor_5.0	2	62,341,187 - 62,341,447	UniSTS	Rnor5.0
RGSC_v3.4	2	43,027,536 - 43,027,796	UniSTS	RGSC3.4
Celera	2	39,101,649 - 39,101,909	UniSTS
Cytogenetic Map	2	q14	UniSTS

REN28471

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,314,861 - 43,315,102 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,293,615 - 43,293,855	NCBI	Rnor6.0
Rnor_5.0	2	62,340,002 - 62,340,242	UniSTS	Rnor5.0
RGSC_v3.4	2	43,026,351 - 43,026,591	UniSTS	RGSC3.4
Celera	2	39,100,464 - 39,100,704	UniSTS
Cytogenetic Map	2	q14	UniSTS

ECD09476

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,315,784 - 43,316,404 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,294,538 - 43,295,157	NCBI	Rnor6.0
Rnor_5.0	2	62,340,925 - 62,341,544	UniSTS	Rnor5.0
RGSC_v3.4	2	43,027,274 - 43,027,893	UniSTS	RGSC3.4
Celera	2	39,101,387 - 39,102,006	UniSTS
Cytogenetic Map	2	q14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001168000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010063601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JQ013732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017571 ⟹ ENSRNOP00000017571

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	45,021,283 - 45,049,745 (+)	Ensembl
mRatBN7.2 Ensembl	2	43,291,881 - 43,316,136 (+)	Ensembl
Rnor_6.0 Ensembl	2	43,271,092 - 43,294,889 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087031 ⟹ ENSRNOP00000069147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	45,021,283 - 45,049,745 (+)	Ensembl
mRatBN7.2 Ensembl	2	43,287,916 - 43,316,136 (+)	Ensembl
Rnor_6.0 Ensembl	2	43,266,739 - 43,291,943 (+)	Ensembl

RefSeq Acc Id:

NM_001168000 ⟹ NP_001161472

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,025,662 - 45,049,459 (+)	NCBI
mRatBN7.2	2	43,292,338 - 43,316,136 (+)	NCBI
Rnor_6.0	2	43,271,092 - 43,294,889 (+)	NCBI
Rnor_5.0	2	62,313,119 - 62,341,562 (+)	NCBI
RGSC_v3.4	2	43,003,828 - 43,027,625 (+)	RGD
Celera	2	39,077,974 - 39,101,738 (+)	RGD

Sequence:

show sequence

TTGGGTCTTTGTCTTCTGAGGATCATGATTTTGACCCCACTGCTGAGATGCTGGTCCATGACTA
TGATGATGAAAGAACTCTAGAGGAAGAGGAATTGATGGGTGACGGCAAAAACTTCAGTTCTGAA
ATTGAAGACCTGGAAAAGGAAGGAAATATGCCTCTAGAAGATCTGTTGGCATTCTACGGCTATG
AATCTACAATTCCAACGGTTGCAAATTCCAGTGCAAACAGCTCCCCAAGTGAACTTGCAGACGA
ACTACCAGATATGACTCTAGACAAAGAAGAAATAGCAAAAGACCTGTTGTCGGGCGATGATGAG
GAAACCCAGTCTTCTGCAGATGACCTGACACCGTCTGTGACTTCCCATGAAACTTCAGACTTCT
TCCCGCGGCCTTTACGATCAAACACAACATGTGATGGAGATAAGGAATCAGAGATTGAGGACGT
TGAAACGGACAGTGGTAACTCACCTGAAGATTTGAGAAAGGAAATAATGATTGGTCTACAGTAT
CAGGCAGAAATTCCCCCTTATCTTGGCGAGTACAGTGGTGATGAGAAAGCTTATGAAAATGAAG
ACCAGTTACTGTGGCGTCCTGATGTGGTTTTGGAGAGCAAAGTCAAGGAGTACCTTATTGAGAC
CTCATTAAGAACTGGAAATGAAAAAGTCCTAGACAGAATTTCCTCAGGCACACACACCAGGGAT
AACGAACAGGCATTATATGAACTTCTCAAGTGTAACCACAATGTTACGGAGGCAATCGAAAGGT
ACTGCTGTAATGGAAAGGCGTCTCAAGAAGGAATGACAGCTTGGACTGAAGAGGAGTGCCGGAG
TTTTGAACATGCGCTAATGCTTTATGGGAAAGATTTTCATCTCATTCAGAAGAATAAGGTGAGA
TCGAGAACTGTTGCTGAATGTGTAGCCTTCTACTACATGTGGAAGAAGTCAGAACGCTACGATT
ACTTTGCTCAACAGACAAAATTTGGAAAGAAACGCTATAACCATCATCCTGGCGTTACGGACTA
TATGGATCGTCTTGTAGATGAAACAGAGTCTCTGGGTGATACGGTCAGTTCTTCAGCCTTAACT
TCTAACCGGCCTGAGCCCATTCCTGATCAGCCGCTGAACATTCTCAGCTCCTTCACTGCCAGTG
ACTTGACAGCTTTGACCAACAGTGTAGCAACTGTCTGCAACCCCACAGATGTGAGTTGTCTGGA
TGATAGCTTTTCTCCACTGGGGAACGCGCCCCGTGGACAAGTCAATCATGTGCCTGTCGTAACG
GAAGAGTTACTCACCCTGCCCAGCAATGGTGAAAGTGATTGTTTTAACTTATTTGAGACTGGAT
TTTATCACTCAGAGTTAAACCCCATGTGCAGCGAAGAATCGGAAAGACCAGCAAAGAGATTGAA
AATGGGCATTGCTGTCCCGGAATCCTTTATGAATGAGGTTTCTGTTAATAACCTGGGTGTAGAC
TTTGAAAATCACACACATCACATCACCAGTGCCAAAATGGCTGTTTCTGTGGCTGACTTTGGCA
GCTTGTCTGCCAGTGAGACAAACGGATTCATCAATGCCCACACTCTACATCAGCACGCAGCCCT
TCATTCAGAGTGACGTGAATGAGCAGCCCAGAGACAATGGGTGTGCAGTGCCAGTAAACTTGAG
GGGAGCTATCAGGTTTGCACAGTCTTTCACTGGAAGTTTGAACCGTTCTCACTATGACATCAGT
GATGTCAGTATGTATAGAACTATATCTTGATTTATCAAGAGTATTTTCATTTTTCAATCCATAA
ATGTGGAAATGAACTATGATCAGCAGAGTTGGGAACTAAGATTGAACTCTGTGGTGCAGCTTTA
AGCTCTGCTTCTCTTCCTCATCCCTTAATACCTCTTCCCACGTCCTCCTTTTCTGTTCCTGTTG
CCCTTACCCCAGATTTAAAACCTGTAGACAGAGGCCACCAGCTCAAACCAGCACAGATGTTCTG
AACTGATGTGTGGCTTCTTTTCATGTCAACTCCTTTTGCCGTAATGGATGCAGTGGAATCACAA
TGTTTACAGGTACCAACCCCGATCCCTGCTCAATGTAGCATTTTTTTTTTTTTTGGTTTTATTT
TCTTTATTAATAATAAAAGCAGGGGTAGGTTTCTTTAAACTGCACAAACATGCAAGGATTTTTT
AAAAACGGAAACTTCTCTCATGTTATTCAACCAGAGCACTTCAGTTTACAAACAGCAAGACCAT
CTGTCTGGAAGCCAGCCGAGGGACTGTGTGCAAATGACGAGACGAGACGCTTGGATCCTGTTCC
CATCCTAGACCAGGGCTACCGTACACAGAACTGGGCACTTTACTGCCGGGAGACTTCTGTGTTA
AAAATTTTTTTCTGACTAAAAATTTGGCATTTGAAGATGTGGTATTCATATGGGATTTTGTCCA
CCATTGTCAAGATTGCAATATTAAAAATCATACTGGTCACTGGTAATTTAGTTTATTCCAAGGC
AGTTGACTTGCAGAAGCACAGTCTACAAAGCCCAGGAAGTTGCCACAGTGGTTTACGTTTTGGG
ACACCTCTTAAGTTTGAACTGCAGTTCAAAGTGTTAATAACGTAGTCTTGTAGATGGTATGCAC
AGTGCAGAGCCTTGAAGTATATTCAAGCTATTTTGTTTAGCTTGAATAGTTGGAAAGAAAAATG
TGAGTTTCTGTCTGAAATAAAATGGTACGTTACCACTTTTAAGTTTTAAGTGAGAGATGTTCAC
AGGCATCTCAGACGTGATTTTACTTTTACTCCAAACGTGAATAAGAAGCCATTGTCATAGCTTT
GCCCATTTTTGCTTTATTAGACATGCTCTTAAGTTTTAAGGTGAATCAAACTATACAATACAGT
ATTAGGATATAAGCTTTGCTTTTATAGTACAGTTAAAACAATTACTTTTTGCACCGTCTTAATT
ACATTTTTTTATTTTACTAGTTGTGTTGCTTTGCAAAAAAACTTAGAACATTTGACTGTGTTGC
TGTTGTGTGAGTTGCTTCAAGGTGTGCTGAGTAGGTAGGAGGTAGTGGTCTTAGTGATTGAAAG
GGAGGGTATTTATTATACAAACTGTGAACTGCAATGACATCCTTGGTTTTGGATGGTGTGCATT
GTTTTTCTTTGCAGCATTTTAATGAAGATTGCTTTGAAGTGTTTACGCTGTAGCACATTAACTA
TAAGATTTAGTTTAGCACAGAGGACGAAGGGTAGTTAAATTAATAACTTAAAAATCAGTCTTTA
ACTTATACATCTAAAATTTAGTATTCCTGTATGCACACAGTAAATAATGGGTAGCCTGGGCTCC
ATGTTGCTTTCTAATATTTTTATCCACATGGTTAGCTTCTTATTGCTGTGTTGTGCTAAACTCG
AACCTTCTTCCTTCGTTCCCTTCAGTATGCTTTCTTTACTGTAGGAGGACACTGGGCATGTTCT
TCCATTGCTGTCACTCTTTGTCACTCTGGGTTTACAGTGGCTGGTCTGTATAAATAATTTACAC
AAAGATGACTGAATGCTAATACCAGTTGCACTTAAGTGAAAATGCCCATTCTCATTAGTTGACA
CAGTTTATCTATGCATTGCTGGGGTCTTGATATAAGATAGAAACGGTGTTTCTTATCTAGAGTT
TTGATTATCAGCAAGTTGAATGGACACTTTAGTTATTTAAATAGATTTTTGACCAAAATCCAGA
AAAATGATATGAGAGAAAGATAAATTCCAGCTGGTTTAACATTTTTAAATGCTAACAGGACTTT
AGCCTCTTAGAGAGGCTACCTAGCTGGGAACGTTTACTTTTAATTCCTTGTTAAAATGAGGCAA
TAATTTGCAAGATTTTTGTATATATGTGTACAGTAAATTCTTTTTTAGACCTAATTCAATATTT
TCTGACTGCTCCTGTCATGTATGATACATTTTTGTGCATGCCTGATGTGACATTCATAAATTGT
ACCACTATGACTTTATCCATGTAAAATAGTTATTTATTGAATTTTCTTTCAACAGCTGGACTTT
TTTTTTTTGTCTCCATTTAAACATCTTAACAGAGAATTTGTTACTGTTTATTAAAAGAATTGAG
TTTGAAAACATAAATCTGATTTGCAATCGTATGAAGAAAAACAATGCCTTTATCATCACGTGTT
AAGCACAATTCTTAAAGCAAACTGTGATAAATTCTTTGTTTCTTTCATTTGCCGCAATATTTTC
ATATGAACAAACCAAAAATCCATGGTGAGCAGTTGCAGTGTGGCTGATCCAACCTTTGTGTACA
GGGAACTGGAGAGGACGTGGACATTCAGAAGTGTAACCTGGTGCTGTGACTAGAGCAATACTTC
ACTCTTGTTAGTTGTGCTTGGCCTTGCTCATGCTAGCCTTTTAAATGTTTAGTTTTCCTCTTGT
CATGGTCAACTGCTGAATTTACTTGAAGGATGTAGAATACTATTTAAAAAAAATACTAAAGTCT
GTACAATTAGGTCAAAGAATTGTGCAATCGTTTCCTTTTTAATTTTTAAAATTGAAGGTCACAA
ATATTTGAGATCAGACCTAGTAGACTAGTAGTACTATTTAATTTAACCAAAGTCTAGTAAATAC
TTCAACTTTGAATGTAAACTAACAAACCCGACCACCAAGGAGATTGTTTGCCCAGAGTTTCAAA
GCACATTGTCTACGAATGGAAATTGAAATAATTTATAAAATATTGACATTACTATGTTTTTTAA
AAAGTTCCTAATTTTTTCACTA

hide sequence

RefSeq Acc Id:

XM_006231924 ⟹ XP_006231986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,021,233 - 45,049,745 (+)	NCBI
mRatBN7.2	2	43,287,913 - 43,316,422 (+)	NCBI
Rnor_6.0	2	43,266,737 - 43,295,175 (+)	NCBI
Rnor_5.0	2	62,313,119 - 62,341,562 (+)	NCBI

Sequence:

show sequence

TTGGCTCAGGCGCCCCATCCGGGGACTGGGCTCGGCGCTGCTCGTTCGCCCTAAAGGTACCAAT
ATGGCGGAGGCTTCCTTTGGAAGTTCGAGCCCAGTTGGGTCTTTGTCTTCTGAGGATCATGATT
TTGACCCCACTGCTGAGATGCTGGTCCATGACTATGATGATGAAAGAACTCTAGAGGAAGAGGA
ATTGATGGGTGACGGCAAAAACTTCAGTTCTGAAATTGAAGACCTGGAAAAGGAAGGAAATATG
CCTCTAGAAGATCTGTTGGCATTCTACGGCTATGAATCTACAATTCCAACGGTTGCAAATTCCA
GTGCAAACAGCTCCCCAAGTGAACTTGCAGACGAACTACCAGATATGACTCTAGACAAAGAAGA
AATAGCAAAAGACCTGTTGTCGGGCGATGATGAGGAAACCCAGTCTTCTGCAGATGACCTGACA
CCGTCTGTGACTTCCCATGAAACTTCAGACTTCTTCCCGCGGCCTTTACGATCAAACACAACAT
GTGATGGAGATAAGGAATCAGAGATTGAGGACGTTGAAACGGACAGTGGTAACTCACCTGAAGA
TTTGAGAAAGGAAATAATGATTGGTCTACAGTATCAGGCAGAAATTCCCCCTTATCTTGGCGAG
TACAGTGGTGATGAGAAAGCTTATGAAAATGAAGACCAGTTACTGTGGCGTCCTGATGTGGTTT
TGGAGAGCAAAGTCAAGGAGTACCTTATTGAGACCTCATTAAGAACTGGAAATGAAAAAGTCCT
AGACAGAATTTCCTCAGGCACACACACCAGGGATAACGAACAGGCATTATATGAACTTCTCAAG
TGTAACCACAATGTTACGGAGGCAATCGAAAGGTACTGCTGTAATGGAAAGGCGTCTCAAGAAG
GAATGACAGCTTGGACTGAAGAGGAGTGCCGGAGTTTTGAACATGCGCTAATGCTTTATGGGAA
AGATTTTCATCTCATTCAGAAGAATAAGGTGAGATCGAGAACTGTTGCTGAATGTGTAGCCTTC
TACTACATGTGGAAGAAGTCAGAACGCTACGATTACTTTGCTCAACAGACAAAATTTGGAAAGA
AACGCTATAACCATCATCCTGGCGTTACGGACTATATGGATCGTCTTGTAGATGAAACAGAGTC
TCTGGGTGATACGGTCAGTTCTTCAGCCTTAACTTCTAACCGGCCTGAGCCCATTCCTGATCAG
CCGCTGAACATTCTCAGCTCCTTCACTGCCAGTGACTTGACAGCTTTGACCAACAGTGTAGCAA
CTGTCTGCAACCCCACAGATGTGAGTTGTCTGGATGATAGCTTTTCTCCACTGGGGAACGCGCC
CCGTGGACAAGTCAATCATGTGCCTGTCGTAACGGAAGAGTTACTCACCCTGCCCAGCAATGGT
GAAAGTGATTGTTTTAACTTATTTGAGACTGGATTTTATCACTCAGAGTTAAACCCCATGTGCA
GCGAAGAATCGGAAAGACCAGCAAAGAGATTGAAAATGGGCATTGCTGTCCCGGAATCCTTTAT
GAATGAGGTTTCTGTTAATAACCTGGGTGTAGACTTTGAAAATCACACACATCACATCACCAGT
GCCAAAATGGCTGTTTCTGTGGCTGACTTTGGCAGCTTGTCTGCCAGTGAGACAAACGGATTCA
TCAATGCCCACACTCTACATCAGCACGCAGCCCTTCATTCAGAGTGACGTGAATGAGCAGCCCA
GAGACAATGGGTGTGCAGTGCCAGTAAACTTGAGGGGAGCTATCAGGTTTGCACAGTCTTTCAC
TGGAAGTTTGAACCGTTCTCACTATGACATCAGTGATGTCAGTATGTATAGAACTATATCTTGA
TTTATCAAGAGTATTTTCATTTTTCAATCCATAAATGTGGAAATGAACTATGATCAGCAGAGTT
GGGAACTAAGATTGAACTCTGTGGTGCAGCTTTAAGCTCTGCTTCTCTTCCTCATCCCTTAATA
CCTCTTCCCACGTCCTCCTTTTCTGTTCCTGTTGCCCTTACCCCAGATTTAAAACCTGTAGACA
GAGGCCACCAGCTCAAACCAGCACAGATGTTCTGAACTGATGTGTGGCTTCTTTTCATGTCAAC
TCCTTTTGCCGTAATGGATGCAGTGGAATCACAATGTTTACAGGTACCAACCCCGATCCCTGCT
CAATGTAGCATTTTTTTTTTTTTTGTTTTATTTTCTTTATTAATAATAAAAGCAGGGGTAGGTT
TCTTTAAACTGCACAAACATGCAAGGATTTTTTAAAAACGGAAACTTCTCTCATGTTATTCAAC
CAGAGCACTTCAGTTTACAAACAGCAAGACCATCTGTCTGGAAGCCAGCCGAGGGACTGTGTGC
AAATGACGAGACGAGACGCTTGGATCCTGTTCCCATCCTAGACCAGGGCTACCGTACACAGAAC
TGGGCACTTTACTGCCGGGAGACTTCTGTGTTAAAAATTTTTTTCTGACTAAAAATTTGGCATT
TGAAGATGTGGTATTCATATGGGATTTTGTCCACCATTGTCAAGATTGCAATATTAAAAATCAT
ACTGGTCACTGGTAATTTAGTTTATTCCAAGGCAGTTGACTTGCAGAAGCACAGTCTACAAAGC
CCAGGAAGTTGCCACAGTGGTTTACGTTTTGGGACACCTCTTAAGTTTGAACTGCAGTTCAAAG
TGTTAATAACGTAGTCTTGTAGATGGTATGCACAGTGCAGAGCCTTGAAGTATATTCAAGCTAT
TTTGTTTAGCTTGAATAGTTGGAAAGAAAAATGTGAGTTTCTGTCTGAAATAAAATGGTACGTT
ACCACTTTTAAGTTTTAAGTGAGAGATGTTCACAGGCATCTCAGACGTGATTTTACTTTTACTC
CAAACGTGAATAAGAAGCCATTGTCATAGCTTTGCCCATTTTTGCTTTATTAGACATGCTCTTA
AGTTTTAAGGTGAATCAAACTATACAATACAGTATTAGGATATAAGCTTTGCTTTTATAGTACA
GTTAAAACAATTACTTTTTGCACCGTCTTAATTACATTTTTTTATTTTACTAGTTGTGTTGCTT
TGCAAAAAAACTTAGAACATTTGACTGTGTTGCTGTTGTGTGAGTTGCTTCAAGGTGTGCTGAG
TAGGTAGGAGGTAGTGGTCTTAGTGATTGAAAGGGAGGGTATTTATTATACAAACTGTGAACTG
CAATGACATCCTTGGTTTTGGATGGTGTGCATTGTTTTTCTTTGCAGCATTTTAATGAAGATTG
CTTTGAAGTGTTTACGCTGTAGCACATTAACTATAAGATTTAGTTTAGCACAGAGGACGAAGGG
TAGTTAAATTAATAACTTAAAAATCAGTCTTTAACTTATACATCTAAAATTTAGTATTCCTGTA
TGCACACAGTAAATAATGGGTAGCCTGGGCTCCATGTTGCTTTCTAATATTTTTATCCACATGG
TTAGCTTCTTATTGCTGTGTTGTGCTAAACTCGAACCTTCTTCCTTCGTTCCCTTCAGTATGCT
TTCTTTACTGTAGGAGGACACTGGGCATGTTCTTCCATTGCTGTCACTCTTTGTCACTCTGGGT
TTACAGTGGCTGGTCTGTATAAATAATTTACACAAAGATGACTGAATGCTAATACCAGTTGCAC
TTAAGTGAAAATGCCCATTCTCATTAGTTGACACAGTTTATCTATGCATTGCTGGGGTCTTGAT
ATAAGATAGAAACGGTGTTTCTTATCTAGAGTTTTGATTATCAGCAAGTTGAATGGACACTTTA
GTTATTTAAATAGATTTTTGACCAAAATCCAGAAAAATGATATGAGAGAAAGATAAATTCCAGC
TGGTTTAACATTTTTAAATGCTAACAGGACTTTAGCCTCTTAGAGAGGCTACCTAGCTGGGAAC
GTTTACTTTTAATTCCTTGTTAAAATGAGGCAATAATTTGCAAGATTTTTGTATATATGTGTAC
AGTAAATTCTTTTTTAGACCTAATTCAATATTTTCTGACTGCTCCTGTCATGTATGATACATTT
TTGTGCATGCCTGATGTGACATTCATAAATTGTACCACTATGACTTTATCCATGTAAAATAGTT
ATTTATTGAATTTTCTTTCAACAGCTGGACTTTTTTTTTTTGTCTCCATTTAAACATCTTAACA
GAGAATTTGTTACTGTTTATTAAAAGAATTGAGTTTGAAAACATAAATCTGATTTGCAATCGTA
TGAAGAAAAACAATGCCTTTATCATCACGTGTTAAGCACAATTCTTAAAGCAAACTGTGATAAA
TTCTTTGTTTCTTTCATTTGCCGCAATATTTTCATATGAACAAACCAAAAATCCATGGTGAGCA
GTTGCAGTGTGGCTGATCCAACCTTTGTGTACAGGGAACTGGAGAGGACGTGGACATTCAGAAG
TGTAACCTGGTGCTGTGACTAGAGCAATACTTCACTCTTGTTAGTTGTGCTTGGCCTTGCTCAT
GCTAGCCTTTTAAATGTTTAGTTTTCCTCTTGTCATGGTCAACTGCTGAATTTACTTGAAGGAT
GTAGAATACTATTTAAAAAAAATACTAAAGTCTGTACAATTAGGTCAAAGAATTGTGCAATCGT
TTCCTTTTTAATTTTTAAAATTGAAGGTCACAAATATTTGAGATCAGACCTAGTAGACTAGTAG
TACTATTTAATTTAACCAAAGTCTAGTAAATACTTCAACTTTGAATGTAAACTAACAAACCCGA
CCACCAAGGAGATTGTTTGCCCAGAGTTTCAAAGCACATTGTCTACGAATGGAAATTGAAATAA
TTTATAAAATATTGACATTACTATGTTTTTTAAAAAGTTCCTAATTTTTTCACTAAAAGGAGGG
AAACTATTAGTTTTATTGTTAAATATGGTAGATATTAATATTCCTCTTAGATGACCAGTGATTG
CAATTGTCCCAGTTTGAACTAAGTACCCCGTGAGTATGAGAGAAACTAGTGACAATCAGAACAC
GTTTTAGTATCCAGTGTTCAAGAGGAAGTTGCTATTGTTGCGTTGATTTTAATATTTGTACATA
AACACTGATTTTTTGAGCATTATTTTGTATTTGTTGTACTTTAATACCTGGTGTACAGTTCCAG
AAATAAAAATCTGGAAATCTG

hide sequence

RefSeq Acc Id:

XM_006231925 ⟹ XP_006231987

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,021,167 - 45,049,745 (+)	NCBI
mRatBN7.2	2	43,287,546 - 43,316,422 (+)	NCBI
Rnor_6.0	2	43,266,301 - 43,295,175 (+)	NCBI
Rnor_5.0	2	62,313,119 - 62,341,562 (+)	NCBI

Sequence:

show sequence

CGCCAGTGAACGCCGATGCGCATTCCATTCCTGCAGGTGCCTAGTCGTCCTGCTTCCTGTCGGG
GTCTCCCTTTTTGGCCATCAGGCGCTCGCTCACTTCCCATCGCGTACTCTTCTCACTTCGAGAA
GTCCGTCGAGCCCTCCTCCAAGTCTCTCGCCACCCCCCTCTGCCGCCCCCGGCATCCCCACCGC
ACCGGCCGGTCCCCGCGCTCGCCCGCAGTTCAGCTGGAACTTTACTCCAGCCGGGGCAGAGCGC
CGTGGGCGCGCGGGGCGGGCGCGTGCAGGAGCGGCGGCCGCGGGAGCGCCGGACGGCGTGGGTG
TGCGAGCGGGCCGGGGGCGTCGCGGGCCGGCCTGCCCTATAAGGGGCCGAGCCGCCTCTGCCTC
CGGGCGGGTGCCTGGCGGGCCGCGGCGGCGGCAGCGGCGGCGGCGGCTGCGATTGGCTCAGGCG
CCCCATCCGGGGACTGGGCTCGGCGCTGCTCGTTCGCCCTAAAGGCTTCCTTTGGAAGTTCGAG
CCCAGTTGGGTCTTTGTCTTCTGAGGATCATGATTTTGACCCCACTGCTGAGATGCTGGTCCAT
GACTATGATGATGAAAGAACTCTAGAGGAAGAGGAATTGATGGGTGACGGCAAAAACTTCAGTT
CTGAAATTGAAGACCTGGAAAAGGAAGGAAATATGCCTCTAGAAGATCTGTTGGCATTCTACGG
CTATGAATCTACAATTCCAACGGTTGCAAATTCCAGTGCAAACAGCTCCCCAAGTGAACTTGCA
GACGAACTACCAGATATGACTCTAGACAAAGAAGAAATAGCAAAAGACCTGTTGTCGGGCGATG
ATGAGGAAACCCAGTCTTCTGCAGATGACCTGACACCGTCTGTGACTTCCCATGAAACTTCAGA
CTTCTTCCCGCGGCCTTTACGATCAAACACAACATGTGATGGAGATAAGGAATCAGAGATTGAG
GACGTTGAAACGGACAGTGGTAACTCACCTGAAGATTTGAGAAAGGAAATAATGATTGGTCTAC
AGTATCAGGCAGAAATTCCCCCTTATCTTGGCGAGTACAGTGGTGATGAGAAAGCTTATGAAAA
TGAAGACCAGTTACTGTGGCGTCCTGATGTGGTTTTGGAGAGCAAAGTCAAGGAGTACCTTATT
GAGACCTCATTAAGAACTGGAAATGAAAAAGTCCTAGACAGAATTTCCTCAGGCACACACACCA
GGGATAACGAACAGGCATTATATGAACTTCTCAAGTGTAACCACAATGTTACGGAGGCAATCGA
AAGGTACTGCTGTAATGGAAAGGCGTCTCAAGAAGGAATGACAGCTTGGACTGAAGAGGAGTGC
CGGAGTTTTGAACATGCGCTAATGCTTTATGGGAAAGATTTTCATCTCATTCAGAAGAATAAGG
TGAGATCGAGAACTGTTGCTGAATGTGTAGCCTTCTACTACATGTGGAAGAAGTCAGAACGCTA
CGATTACTTTGCTCAACAGACAAAATTTGGAAAGAAACGCTATAACCATCATCCTGGCGTTACG
GACTATATGGATCGTCTTGTAGATGAAACAGAGTCTCTGGGTGATACGGTCAGTTCTTCAGCCT
TAACTTCTAACCGGCCTGAGCCCATTCCTGATCAGCCGCTGAACATTCTCAGCTCCTTCACTGC
CAGTGACTTGACAGCTTTGACCAACAGTGTAGCAACTGTCTGCAACCCCACAGATGTGAGTTGT
CTGGATGATAGCTTTTCTCCACTGGGGAACGCGCCCCGTGGACAAGTCAATCATGTGCCTGTCG
TAACGGAAGAGTTACTCACCCTGCCCAGCAATGGTGAAAGTGATTGTTTTAACTTATTTGAGAC
TGGATTTTATCACTCAGAGTTAAACCCCATGTGCAGCGAAGAATCGGAAAGACCAGCAAAGAGA
TTGAAAATGGGCATTGCTGTCCCGGAATCCTTTATGAATGAGGTTTCTGTTAATAACCTGGGTG
TAGACTTTGAAAATCACACACATCACATCACCAGTGCCAAAATGGCTGTTTCTGTGGCTGACTT
TGGCAGCTTGTCTGCCAGTGAGACAAACGGATTCATCAATGCCCACACTCTACATCAGCACGCA
GCCCTTCATTCAGAGTGACGTGAATGAGCAGCCCAGAGACAATGGGTGTGCAGTGCCAGTAAAC
TTGAGGGGAGCTATCAGGTTTGCACAGTCTTTCACTGGAAGTTTGAACCGTTCTCACTATGACA
TCAGTGATGTCAGTATGTATAGAACTATATCTTGATTTATCAAGAGTATTTTCATTTTTCAATC
CATAAATGTGGAAATGAACTATGATCAGCAGAGTTGGGAACTAAGATTGAACTCTGTGGTGCAG
CTTTAAGCTCTGCTTCTCTTCCTCATCCCTTAATACCTCTTCCCACGTCCTCCTTTTCTGTTCC
TGTTGCCCTTACCCCAGATTTAAAACCTGTAGACAGAGGCCACCAGCTCAAACCAGCACAGATG
TTCTGAACTGATGTGTGGCTTCTTTTCATGTCAACTCCTTTTGCCGTAATGGATGCAGTGGAAT
CACAATGTTTACAGGTACCAACCCCGATCCCTGCTCAATGTAGCATTTTTTTTTTTTTTGTTTT
ATTTTCTTTATTAATAATAAAAGCAGGGGTAGGTTTCTTTAAACTGCACAAACATGCAAGGATT
TTTTAAAAACGGAAACTTCTCTCATGTTATTCAACCAGAGCACTTCAGTTTACAAACAGCAAGA
CCATCTGTCTGGAAGCCAGCCGAGGGACTGTGTGCAAATGACGAGACGAGACGCTTGGATCCTG
TTCCCATCCTAGACCAGGGCTACCGTACACAGAACTGGGCACTTTACTGCCGGGAGACTTCTGT
GTTAAAAATTTTTTTCTGACTAAAAATTTGGCATTTGAAGATGTGGTATTCATATGGGATTTTG
TCCACCATTGTCAAGATTGCAATATTAAAAATCATACTGGTCACTGGTAATTTAGTTTATTCCA
AGGCAGTTGACTTGCAGAAGCACAGTCTACAAAGCCCAGGAAGTTGCCACAGTGGTTTACGTTT
TGGGACACCTCTTAAGTTTGAACTGCAGTTCAAAGTGTTAATAACGTAGTCTTGTAGATGGTAT
GCACAGTGCAGAGCCTTGAAGTATATTCAAGCTATTTTGTTTAGCTTGAATAGTTGGAAAGAAA
AATGTGAGTTTCTGTCTGAAATAAAATGGTACGTTACCACTTTTAAGTTTTAAGTGAGAGATGT
TCACAGGCATCTCAGACGTGATTTTACTTTTACTCCAAACGTGAATAAGAAGCCATTGTCATAG
CTTTGCCCATTTTTGCTTTATTAGACATGCTCTTAAGTTTTAAGGTGAATCAAACTATACAATA
CAGTATTAGGATATAAGCTTTGCTTTTATAGTACAGTTAAAACAATTACTTTTTGCACCGTCTT
AATTACATTTTTTTATTTTACTAGTTGTGTTGCTTTGCAAAAAAACTTAGAACATTTGACTGTG
TTGCTGTTGTGTGAGTTGCTTCAAGGTGTGCTGAGTAGGTAGGAGGTAGTGGTCTTAGTGATTG
AAAGGGAGGGTATTTATTATACAAACTGTGAACTGCAATGACATCCTTGGTTTTGGATGGTGTG
CATTGTTTTTCTTTGCAGCATTTTAATGAAGATTGCTTTGAAGTGTTTACGCTGTAGCACATTA
ACTATAAGATTTAGTTTAGCACAGAGGACGAAGGGTAGTTAAATTAATAACTTAAAAATCAGTC
TTTAACTTATACATCTAAAATTTAGTATTCCTGTATGCACACAGTAAATAATGGGTAGCCTGGG
CTCCATGTTGCTTTCTAATATTTTTATCCACATGGTTAGCTTCTTATTGCTGTGTTGTGCTAAA
CTCGAACCTTCTTCCTTCGTTCCCTTCAGTATGCTTTCTTTACTGTAGGAGGACACTGGGCATG
TTCTTCCATTGCTGTCACTCTTTGTCACTCTGGGTTTACAGTGGCTGGTCTGTATAAATAATTT
ACACAAAGATGACTGAATGCTAATACCAGTTGCACTTAAGTGAAAATGCCCATTCTCATTAGTT
GACACAGTTTATCTATGCATTGCTGGGGTCTTGATATAAGATAGAAACGGTGTTTCTTATCTAG
AGTTTTGATTATCAGCAAGTTGAATGGACACTTTAGTTATTTAAATAGATTTTTGACCAAAATC
CAGAAAAATGATATGAGAGAAAGATAAATTCCAGCTGGTTTAACATTTTTAAATGCTAACAGGA
CTTTAGCCTCTTAGAGAGGCTACCTAGCTGGGAACGTTTACTTTTAATTCCTTGTTAAAATGAG
GCAATAATTTGCAAGATTTTTGTATATATGTGTACAGTAAATTCTTTTTTAGACCTAATTCAAT
ATTTTCTGACTGCTCCTGTCATGTATGATACATTTTTGTGCATGCCTGATGTGACATTCATAAA
TTGTACCACTATGACTTTATCCATGTAAAATAGTTATTTATTGAATTTTCTTTCAACAGCTGGA
CTTTTTTTTTTTGTCTCCATTTAAACATCTTAACAGAGAATTTGTTACTGTTTATTAAAAGAAT
TGAGTTTGAAAACATAAATCTGATTTGCAATCGTATGAAGAAAAACAATGCCTTTATCATCACG
TGTTAAGCACAATTCTTAAAGCAAACTGTGATAAATTCTTTGTTTCTTTCATTTGCCGCAATAT
TTTCATATGAACAAACCAAAAATCCATGGTGAGCAGTTGCAGTGTGGCTGATCCAACCTTTGTG
TACAGGGAACTGGAGAGGACGTGGACATTCAGAAGTGTAACCTGGTGCTGTGACTAGAGCAATA
CTTCACTCTTGTTAGTTGTGCTTGGCCTTGCTCATGCTAGCCTTTTAAATGTTTAGTTTTCCTC
TTGTCATGGTCAACTGCTGAATTTACTTGAAGGATGTAGAATACTATTTAAAAAAAATACTAAA
GTCTGTACAATTAGGTCAAAGAATTGTGCAATCGTTTCCTTTTTAATTTTTAAAATTGAAGGTC
ACAAATATTTGAGATCAGACCTAGTAGACTAGTAGTACTATTTAATTTAACCAAAGTCTAGTAA
ATACTTCAACTTTGAATGTAAACTAACAAACCCGACCACCAAGGAGATTGTTTGCCCAGAGTTT
CAAAGCACATTGTCTACGAATGGAAATTGAAATAATTTATAAAATATTGACATTACTATGTTTT
TTAAAAAGTTCCTAATTTTTTCACTAAAAGGAGGGAAACTATTAGTTTTATTGTTAAATATGGT
AGATATTAATATTCCTCTTAGATGACCAGTGATTGCAATTGTCCCAGTTTGAACTAAGTACCCC
GTGAGTATGAGAGAAACTAGTGACAATCAGAACACGTTTTAGTATCCAGTGTTCAAGAGGAAGT
TGCTATTGTTGCGTTGATTTTAATATTTGTACATAAACACTGATTTTTTGAGCATTATTTTGTA
TTTGTTGTACTTTAATACCTGGTGTACAGTTCCAGAAATAAAAATCTGGAAATCTG

hide sequence

RefSeq Acc Id:

XM_039102181 ⟹ XP_038958109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,021,653 - 45,049,745 (+)	NCBI
mRatBN7.2	2	43,288,330 - 43,316,422 (+)	NCBI

RefSeq Acc Id:

XM_063281723 ⟹ XP_063137793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,021,744 - 45,049,745 (+)	NCBI

RefSeq Acc Id:

XR_010063601

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,021,233 - 45,049,745 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001161472	(Get FASTA)	NCBI Sequence Viewer
	XP_006231986	(Get FASTA)	NCBI Sequence Viewer
	XP_006231987	(Get FASTA)	NCBI Sequence Viewer
	XP_038958109	(Get FASTA)	NCBI Sequence Viewer
	XP_063137793	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AFD32167	(Get FASTA)	NCBI Sequence Viewer
	EDM10339	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017571.8
	ENSRNOP00000069147
	ENSRNOP00000069147.1

RefSeq Acc Id:

NP_001161472 ⟸ NM_001168000

- UniProtKB:

A6I5N1 (UniProtKB/TrEMBL), D3ZE77 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLVHDYDDERTLEEEELMGDGKNFSSEIEDLEKEGNMPLEDLLAFYGYESTIPTVANSSANSSP
SELADELPDMTLDKEEIAKDLLSGDDEETQSSADDLTPSVTSHETSDFFPRPLRSNTTCDGDKE
SEIEDVETDSGNSPEDLRKEIMIGLQYQAEIPPYLGEYSGDEKAYENEDQLLWRPDVVLESKVK
EYLIETSLRTGNEKVLDRISSGTHTRDNEQALYELLKCNHNVTEAIERYCCNGKASQEGMTAWT
EEECRSFEHALMLYGKDFHLIQKNKVRSRTVAECVAFYYMWKKSERYDYFAQQTKFGKKRYNHH
PGVTDYMDRLVDETESLGDTVSSSALTSNRPEPIPDQPLNILSSFTASDLTALTNSVATVCNPT
DVSCLDDSFSPLGNAPRGQVNHVPVVTEELLTLPSNGESDCFNLFETGFYHSELNPMCSEESER
PAKRLKMGIAVPESFMNEVSVNNLGVDFENHTHHITSAKMAVSVADFGSLSASETNGFINAHTL
HQHAALHSE

hide sequence

RefSeq Acc Id:	XP_006231986 ⟸ XM_006231924
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JUL8 (UniProtKB/TrEMBL), D3ZE77 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEASFGSSSPVGSLSSEDHDFDPTAEMLVHDYDDERTLEEEELMGDGKNFSSEIEDLEKEGNM PLEDLLAFYGYESTIPTVANSSANSSPSELADELPDMTLDKEEIAKDLLSGDDEETQSSADDLT PSVTSHETSDFFPRPLRSNTTCDGDKESEIEDVETDSGNSPEDLRKEIMIGLQYQAEIPPYLGE YSGDEKAYENEDQLLWRPDVVLESKVKEYLIETSLRTGNEKVLDRISSGTHTRDNEQALYELLK CNHNVTEAIERYCCNGKASQEGMTAWTEEECRSFEHALMLYGKDFHLIQKNKVRSRTVAECVAF YYMWKKSERYDYFAQQTKFGKKRYNHHPGVTDYMDRLVDETESLGDTVSSSALTSNRPEPIPDQ PLNILSSFTASDLTALTNSVATVCNPTDVSCLDDSFSPLGNAPRGQVNHVPVVTEELLTLPSNG ESDCFNLFETGFYHSELNPMCSEESERPAKRLKMGIAVPESFMNEVSVNNLGVDFENHTHHITS AKMAVSVADFGSLSASETNGFINAHTLHQHAALHSE hide sequence

RefSeq Acc Id:	XP_006231987 ⟸ XM_006231925
- Peptide Label:	isoform X2
- UniProtKB:	A6I5N1 (UniProtKB/TrEMBL), D3ZE77 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRIPFLQVPSRPASCRGLPFWPSGARSLPIAYSSHFEKSVEPSSKSLATPLCRPRHPHRTGRSP RSPAVQLELYSSRGRAPWARGAGACRSGGRGSAGRRGCASGPGASRAGLPYKGPSRLCLRAGAW RAAAAAAAAAAAIGSGAPSGDWARRCSFALKASFGSSSPVGSLSSEDHDFDPTAEMLVHDYDDE RTLEEEELMGDGKNFSSEIEDLEKEGNMPLEDLLAFYGYESTIPTVANSSANSSPSELADELPD MTLDKEEIAKDLLSGDDEETQSSADDLTPSVTSHETSDFFPRPLRSNTTCDGDKESEIEDVETD SGNSPEDLRKEIMIGLQYQAEIPPYLGEYSGDEKAYENEDQLLWRPDVVLESKVKEYLIETSLR TGNEKVLDRISSGTHTRDNEQALYELLKCNHNVTEAIERYCCNGKASQEGMTAWTEEECRSFEH ALMLYGKDFHLIQKNKVRSRTVAECVAFYYMWKKSERYDYFAQQTKFGKKRYNHHPGVTDYMDR LVDETESLGDTVSSSALTSNRPEPIPDQPLNILSSFTASDLTALTNSVATVCNPTDVSCLDDSF SPLGNAPRGQVNHVPVVTEELLTLPSNGESDCFNLFETGFYHSELNPMCSEESERPAKRLKMGI AVPESFMNEVSVNNLGVDFENHTHHITSAKMAVSVADFGSLSASETNGFINAHTLHQHAALHSE hide sequence

Ensembl Acc Id:

ENSRNOP00000069147 ⟸ ENSRNOT00000087031

Ensembl Acc Id:

ENSRNOP00000017571 ⟸ ENSRNOT00000017571

RefSeq Acc Id:	XP_038958109 ⟸ XM_039102181
- Peptide Label:	isoform X2
- UniProtKB:	A6I5N1 (UniProtKB/TrEMBL), D3ZE77 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137793 ⟸ XM_063281723
- Peptide Label:	isoform X2
- UniProtKB:	A6I5N1 (UniProtKB/TrEMBL), D3ZE77 (UniProtKB/TrEMBL)

Protein Domains

ELM2 SANT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JUL8-F1-model_v2	AlphaFold	A0A0G2JUL8	1-548	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691140

Promoter ID:

EPDNEW_R1659

Type:

multiple initiation site

Name:

Mier3_1

Description:

MIER family member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	43,266,780 - 43,266,840	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311241	AgrOrtholog
BioCyc Gene	G2FUF-54420	BioCyc
Ensembl Genes	ENSRNOG00000013121	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017571.9	UniProtKB/TrEMBL
	ENSRNOT00000087031	ENTREZGENE
	ENSRNOT00000087031.3	UniProtKB/TrEMBL
Gene3D-CATH	4.10.1240.50	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	ELM2	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
	MIER/MTA	UniProtKB/TrEMBL
	MIER1/3_C	UniProtKB/TrEMBL
	SANT_DNA-bd	UniProtKB/TrEMBL
	SANT_eukarya	UniProtKB/TrEMBL
KEGG Report	rno:310086	UniProtKB/TrEMBL
NCBI Gene	310086	ENTREZGENE
PANTHER	PTHR10865	UniProtKB/TrEMBL
	PTHR10865:SF22	UniProtKB/TrEMBL
Pfam	ELM2	UniProtKB/TrEMBL
	MIER1_beta_C	UniProtKB/TrEMBL
	Myb_DNA-binding	UniProtKB/TrEMBL
PhenoGen	Mier3	PhenoGen
PROSITE	ELM2	UniProtKB/TrEMBL
	SANT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013121	RatGTEx
SMART	ELM2	UniProtKB/TrEMBL
	SANT	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
UniProt	A0A0G2JUL8	ENTREZGENE, UniProtKB/TrEMBL
	A6I5N1	ENTREZGENE, UniProtKB/TrEMBL
	D3ZE77	ENTREZGENE, UniProtKB/TrEMBL
	H9BFG6_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-02-15	Mier3	MIER family member 3	Mier3	mesoderm induction early response 1, family member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-27	Mier3	mesoderm induction early response 1, family member 3	RGD1311241_predicted	similar to RIKEN cDNA D130064H19 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1311241_predicted	similar to RIKEN cDNA D130064H19 (predicted)	LOC310086_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC310086_predicted	similar to RIKEN cDNA D130064H19 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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