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Gene: Zc3h7a (zinc finger CCCH type containing 7 A) Rattus norvegicus

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Symbol:

Zc3h7a

Name:

zinc finger CCCH type containing 7 A

RGD ID:

1311225

Description:

Predicted to enable miRNA binding activity. Predicted to be involved in miRNA processing. Predicted to act upstream of with a positive effect on post-transcriptional regulation of gene expression. Predicted to be located in nucleus. Orthologous to human ZC3H7A (zinc finger CCCH-type containing 7A); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC103694286; LOC360466; uncharacterized LOC103694286; Zc3hdc7; zinc finger CCCH domain-containing protein 7A; zinc finger CCCH type domain containing 7; zinc finger CCCH-type containing 7A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZC3H7A (zinc finger CCCH-type containing 7A)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Zc3h7a (zinc finger CCCH type containing 7 A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zc3h7a (zinc finger CCCH-type containing 7A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZC3H7A (zinc finger CCCH-type containing 7A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZC3H7A (zinc finger CCCH-type containing 7A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zc3h7a (zinc finger CCCH-type containing 7A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZC3H7A (zinc finger CCCH-type containing 7A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZC3H7A (zinc finger CCCH-type containing 7A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zc3h7a (zinc finger CCCH-type containing 7A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Zc3h7a (zinc finger CCCH-type containing 7A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CFAP97D1 (CFAP97 domain containing 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ZC3H7A (zinc finger CCCH-type containing 7A)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zc3h7a (zinc finger CCCH type containing 7 A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zc3h7a (zinc finger CCCH-type containing 7A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zc3h7a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zc3h7a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	zc3h7b	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	4,980,147 - 5,019,637 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	4,980,161 - 5,019,636 (+)	Ensembl				GRCr8
mRatBN7.2	10	4,473,177 - 4,512,668 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	4,473,203 - 4,512,665 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	9,169,869 - 9,209,335 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	8,690,956 - 8,730,413 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	4,329,208 - 4,368,665 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	4,535,651 - 4,575,643 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	4,536,180 - 4,575,646 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	3,365,911 - 3,405,540 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	4,361,356 - 4,400,822 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	3,496,703 - 3,536,174 (+)	NCBI		Celera
RGSC_v3.1	10	4,361,404 - 4,400,818 (+)	NCBI
Cytogenetic Map	10	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

carbon nanotube (ISO)

chrysene (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

lead(0) (ISO)

methyl methanesulfonate (ISO)

nicotine (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

quercetin (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thiram (ISO)

titanium dioxide (ISO)

torcetrapib (ISO)

trichostatin A (ISO)

triptonide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

miRNA processing (IBA,IEA,ISO)

post-transcriptional regulation of gene expression (IEA,ISO)

Cellular Component

cytosol (IEA,ISO)

nucleus (IEA)

Molecular Function

metal ion binding (IEA)

miRNA binding (IBA,IEA,ISO)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22658674	PMID:22681889	PMID:28431233

Genomics

Comparative Map Data

Zc3h7a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	4,980,147 - 5,019,637 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	4,980,161 - 5,019,636 (+)	Ensembl				GRCr8
mRatBN7.2	10	4,473,177 - 4,512,668 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	4,473,203 - 4,512,665 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	9,169,869 - 9,209,335 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	8,690,956 - 8,730,413 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	4,329,208 - 4,368,665 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	4,535,651 - 4,575,643 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	4,536,180 - 4,575,646 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	3,365,911 - 3,405,540 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	4,361,356 - 4,400,822 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	3,496,703 - 3,536,174 (+)	NCBI		Celera
RGSC_v3.1	10	4,361,404 - 4,400,818 (+)	NCBI
Cytogenetic Map	10	q11	NCBI

ZC3H7A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	11,750,597 - 11,797,258 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	11,750,586 - 11,797,258 (-)	Ensembl			hg38	GRCh38
GRCh37	16	11,844,453 - 11,891,114 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	11,751,943 - 11,783,909 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	11,751,943 - 11,783,909	NCBI
Celera	16	12,018,794 - 12,050,728 (-)	NCBI		Celera
Cytogenetic Map	16	p13.13	NCBI
HuRef	16	11,760,486 - 11,807,710 (-)	NCBI		HuRef
CHM1_1	16	11,844,381 - 11,891,048 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	11,786,640 - 11,833,292 (-)	NCBI		T2T-CHM13v2.0

Zc3h7a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	10,954,458 - 10,994,257 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	10,954,456 - 10,994,257 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	11,136,594 - 11,176,393 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	11,136,592 - 11,176,393 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	11,136,687 - 11,176,486 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	11,050,181 - 11,089,867 (-)	NCBI		MGSCv36	mm8
Celera	16	11,766,853 - 11,808,098 (-)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	6.35	NCBI

Zc3h7a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	6,853,936 - 6,886,079 (+)	Ensembl
ChiLan1.0	NW_004955442	6,847,224 - 6,884,537 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZC3H7A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	12,299,350 - 12,346,385 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	16,070,191 - 16,117,101 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	10,691,710 - 10,738,604 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	11,917,628 - 11,948,957 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	11,917,628 - 11,948,957 (-)	Ensembl			panPan2	panpan1.1

ZC3H7A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	31,042,964 - 31,069,507 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	31,040,414 - 31,069,229 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	32,411,630 - 32,449,962 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	31,209,735 - 31,248,056 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	31,218,949 - 31,248,043 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	31,023,545 - 31,061,870 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	30,898,286 - 30,936,592 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	31,321,587 - 31,359,924 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zc3h7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	111,712,959 - 111,735,958 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	9,557,154 - 9,581,628 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	9,558,395 - 9,581,337 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZC3H7A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	31,332,511 - 31,372,799 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	31,332,486 - 31,372,802 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZC3H7A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	11,214,635 - 11,260,839 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	11,215,368 - 11,260,791 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	18,883,498 - 18,932,054 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zc3h7a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	6,534,513 - 6,571,103 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624782	6,534,313 - 6,569,946 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zc3h7a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	11,154,314 - 11,193,417 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zc3h7a
130 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	121
Count of miRNA genes:	96
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000003309
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
1549898	Neuinf3	Neuroinflammation QTL 3	26.4		nervous system integrity trait (VT:0010566)	MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)	10	1	5893911	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Markers in Region

D10Got8

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	4,494,989 - 4,495,104 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	4,557,966 - 4,558,080	NCBI	Rnor6.0
Rnor_5.0	10	3,387,854 - 3,387,968	UniSTS	Rnor5.0
RGSC_v3.4	10	4,383,144 - 4,383,259	RGD	RGSC3.4
RGSC_v3.4	10	4,383,145 - 4,383,259	UniSTS	RGSC3.4
Celera	10	3,518,496 - 3,518,610	UniSTS
RGSC_v3.1	10	4,383,145 - 4,383,259	RGD
RH 3.4 Map	10	0.0	RGD
RH 3.4 Map	10	0.0	UniSTS
Cytogenetic Map	10	q11	UniSTS

RH130742

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	5,019,228 - 5,019,419 (+)	Marker Load Pipeline
mRatBN7.2	10	4,512,259 - 4,512,450 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	4,575,234 - 4,575,424	NCBI	Rnor6.0
Rnor_5.0	10	3,405,131 - 3,405,321	UniSTS	Rnor5.0
RGSC_v3.4	10	4,400,413 - 4,400,603	UniSTS	RGSC3.4
Celera	10	3,535,765 - 3,535,955	UniSTS
RH 3.4 Map	10	41.2	UniSTS
Cytogenetic Map	10	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	13	67	179	91	90	59	96	59	6	363	197	13	162	83	96	31	26	26

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_594546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC136795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003309 ⟹ ENSRNOP00000003309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	4,980,175 - 5,019,636 (+)	Ensembl
mRatBN7.2 Ensembl	10	4,473,203 - 4,512,665 (+)	Ensembl
Rnor_6.0 Ensembl	10	4,536,180 - 4,575,643 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084151 ⟹ ENSRNOP00000069541

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	4,538,111 - 4,575,646 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149199 ⟹ ENSRNOP00000100952

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	4,980,175 - 5,019,636 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150174 ⟹ ENSRNOP00000108427

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	4,980,205 - 5,019,636 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000164957 ⟹ ENSRNOP00000108870

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	4,980,161 - 5,019,631 (+)	Ensembl

RefSeq Acc Id:

NM_001108262 ⟹ NP_001101732

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	4,980,176 - 5,019,637 (+)	NCBI
mRatBN7.2	10	4,473,204 - 4,512,668 (+)	NCBI
Rnor_6.0	10	4,536,180 - 4,575,643 (+)	NCBI
Rnor_5.0	10	3,365,911 - 3,405,540 (+)	NCBI
RGSC_v3.4	10	4,361,356 - 4,400,822 (+)	RGD
Celera	10	3,496,703 - 3,536,174 (+)	RGD

Sequence:

show sequence

TGGCTGCTGCGGTGGGTCGCCCAGGGAAGCCGTGAGACTGAGAGCTAGAGCGGGTGAACGCACA
TCCCGCTGTCGCCTCCGCAACCTCCACGTCCAGAGTGCCGCCCCGCAGATTGCTCATTAGCAAG
TGGATGTACAGGGTAACATGTCCAGTGTGTCGGAGGAGAGAAGAAAAAGGCAGCACAGCATCAA
GGACGGTCTACAGTTCATCCAGTCTCCACTGTCATATCCAGGGACCCAGGAGCAGTATGCGGTG
TATTTGCATGCTCTTGTGAGAAATCTTTTTAATGAAGGAAATGATGTTTACCGGGAATGTGATT
GGAGCGGCTCTCTACTTCAGTATTCAGAAGCTCTGAATATAGCAAGTTATGCAAAGTCTGAAGA
AATTTTAATTCCTAAAGAAATCATTGAAAAACTTCAGATAAATCGTATTGCCTGCTATTCTAAT
ATGGGTCTCCATGATAAAGTTTTAGAAGACTGTAACGCTGTCCTCAGTGTTAATGCCAGTAACT
GCAAGGCTCTGTATCGGAAGGCTAAGGCTCTAAGTGACTTAAGGCGCTACAGAGAGGCCTATGA
TGTCGTGGCAAAGTGCTCCTTAGCGGTGCCTCAGGATGAACATGTAATAAAGCTAACTCAAGAA
TTAGCTCAGAAATTGGGATTTAAAATAAGGAAAGCATATGTTAGAGCTGAGCTCTCACTGAAAG
CAGTTCCTGGGGACGGGGCTCCCAAGGCTGTGAACCATTCTGTGGAAGATATTGAACCAGTGTT
TGCAAATGGAGGGAAGATCCCCTTCACCATATCAGAAGCTTTTCTGGATGATGACATTGTCCTT
GGGGATGAAATAGATGCTCTTCTTGATTCTGCCCCAGAAACTAACGATGCTGTTATGTCCTCCA
CCCTGGTCCGAGGACCCCTCCCGACTGCCAGCGCAGCTCCAGGCTTCCCCTTCAGGGCACCATC
CCTGCTTGGAACCTTGCCCATTGGTGCAAGGTACGCTCCTGAGCCCTCCTTTGCAGAGTGCTTT
CCACCTCTGACTTCACCCTTGGAAGACTTCTACTCTTCTTTAAATGCATTTTCGGTGACTGAGT
CCACTCGAGATCTGTCCACCTCAACTGCTAGAGAGGGAACAGCGCTTAACAGCAGTAACTCCTC
CCTTTTACTTATGAATGGACCAGGTAGTTTGTTTGCCTCTGACAATTTTCTGGGAATTACAAGT
CAGCCTAGCAATGACTGTGGAAACTTGTTTGGAAGTGTGATCGCTAAACCATTTTCTTCAGGGA
CTCCTAGGCATCCCCTTGAAGGAACCCACGAGCTGAGGCAAGCTTGCCAGATCTGCTTTGTAAA
ATCAGGCCCTAAGTTAATGGATTTCACATACCATGCTAATTTAGATCATAAATGTAAGAAAGAT
ATTTTAATTGGTAGGATAAAAAATGTTGAAGATAAATCATGGAAAAAAATACGTCCAAGACCAA
CAAAAACAAATTATGAAGGACCATATTATATATGCAAAGATGTTGCTGCCGACGATGAATGTCG
ATATTCAGGCCACTGCACGTTTGCTTATTGCCAAGAAGAGATAGATGTGTGGACCCTGGAAAGG
ACAGGGGCCTTCAGTCGAGAGGCTTTCTTTGGCGGCAATGGAAAGATCAGCCTGACTGTGGTCA
AAATCCTCCAGGAGCACCTTGGAGAGTTTACATTCCTTTGTGAGAAATGTTTTGATCATAAACC
TAGAATGATAAGTAAAAGAAATAAAGATAACTCTACTGCCTGTTCTCACCCGGTCACAAAGCAT
GAATTCGAGGACAATAAGTGCCTTGTTCACATTTTGAGAGAGGCCACAGTAAAATATTCCAAAA
TACGGTCTTTTCATAAACAGTGTCAGCTTGACTTATGTCGACACGAAGTCCGTTATGGCTGCGT
CAGGGAAGATGAGTGCTTCTATGCCCACAGTCTTATTGAATTGAAAGTTTGGATAATGCAAAAT
GAAAGAGGTATCTCCCATGATGATATTGCTCAACAATCCAGACAGTACTGGAGAAGTTTGGAAG
CAAGCCTGCCTGGACTGCAGGTACTTGGTAATCAGATCATGCCTGGATTACTTAACATGGAGAT
AAAGTTTGTCTGTGCTCAGTGTCTGAGAAATGGCCAAGTTACCGAACCCGACAGGAACAGGAAA
TACTGCAGTGCCAAAGCACAGCACTCGTGGACCAAAGAACGTCGTGCAATGAGAGCGATGTCTT
TTGAACCTATGCAACCATATTGCTAATAGAAAAAAGTGTCAGTATGTTGGCAACTGTTCCTTTG
CTCATAGTCCTGAGGAACGGGAAGTGTGGACTTACATGAAGGATAACAAAATACATGATATAGA
GCAGTTTTATGAACTCTGGCTGAAGAACCAGAAAACTGAAAAAAGTGATGAGACATCCAGTCAC
TGTAGCAAAGAAAACGGGAAGCAGATCCACATGCCAACAGACTATGCGGAAGTCACTGTGGACT
TCCACTGCTGGATGTGTGGGAAGAACTGTAACAGTGAGAAGCAGTGGCAAGACCACATCTCCTC
CGAGAAGCACAAGGAGAAGGTTTTCCACACTGAGGACGACCAGTACTGCTGGCAGCACCGCTTC
CCCACAGGGTACTTCAGTGTTTGTGACAGGTATATGGATGGCTCCTGCACAGAAGGAAGCAGCT
GTAAATTTGCACATGGAAATGCTGAACTTCATGAATGGGAAGAGAGAAGGAAGGCCCTTCAGAT
GAAACTCCAGAAAGCACGGAAAGATCATTTAATTGCCCCAAATGATAATGACTTTGGAAAATAT
AGTTTTTTGTTTAAAGATTTAAAGTAATATGCTGGCTTTTATGTAACCCAATCGGAGCACTGAC
CAGAAAAATTGCAGGTGTTGAACGGCGCATAGCAGAGGAGCTGCAGATTTTCTGCTTGATCAGC
ATCTATCGTTCCTCCTGAGCAGCAACCATAGTAGATAGGACAGGCTGTTTGACAGGCCTGGCTA
GGCTCTGTGCAGCCACTGGCATCAGATGGCGGCGACTTGCTTCCAGGTTGCACTCTGTTGGATA
GAAGTTTGGCTGAGGTGTGTTGGGGAAGAGGGTAAGGTTCAGGATGACTCTAAGGGAAGAACCA
TGGCCACGAGAGAATAATGTACACTGGGATTGGAATGAGCGAGGGATGAAATTCCCTCTGTGTT
TTAGTGGAATGAATGTATTTAATAAAATAATAAAGTCTGCTACTTATCTGTATGTAGGTTGCTA
AAAAGGATTTTCTTAACTCAGATTTTTAAGCCAAATAACCATTTAGCACTAGGGTCTGTTAAAT
GGGTATTTTCTGTATTTGTATGTCTCACTGTGATAAGGGAACTGATGATCATGCACATCAAGAA
TATTTTAAAAGTAATCAGTGGACACAAATTTTATTTCTTGGTCTTTTGCTGCTTAAATGATGAT
TTTTGAAAGATTAAACTTGTACTGCTGGTATTGTGTAGCGTATGGACCGATATTGCTTGTAATA
AAAGATTTTACATAGAGATGAC

hide sequence

RefSeq Acc Id:

XM_008767490 ⟹ XP_008765712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	4,980,169 - 5,019,637 (+)	NCBI
mRatBN7.2	10	4,473,187 - 4,512,668 (+)	NCBI
Rnor_6.0	10	4,535,652 - 4,575,642 (+)	NCBI

Sequence:

show sequence

TGTTTTCAAGACGATAAAAATAGTGACTGAGAATAATTACCTATGGAATAGGGAATTGAGAACA
GCTTTCGGAGAGAATGACGCTCCCGGCGCCCAAATGAGTTTAGGTACCTGCCATTTATTTGATT
AGGACAACTGTATGGCTGGATTTTTTTGGTTTTTTGTTTGTTTTTTTCAGGGTGACGGTAACGG
AGTCGGAATGCAGAGAAGGACGCTCGGCATAAGTTGCTGCAAGGAACAAATTCCGGAGAAAGTG
ACACCTGTGCGCAGATGAATCTAGGTCTCCTTCTCTAGTCCAAGGGCCGTGGGAGAGGGCGAGG
ACACTGGGCTCACGAGCTTGCGGTCGCTCACCCCTTTCCGTGTGACCACCTCGGGTTCCGCCTA
TCGCCGCCGCTTCCGCAGCCCCAAGGCCCCGACGTGGCGCCTCCATTCCTGGCCTGACGCTGGC
AGCGCAGCCAATGGTGGCGTCTGCGGGGCGGCACGCAAGGCCTCCCGCCGCCAGAGGGCGCCGC
CCCGAGCGTCGCGGGCTGGCTGCTGCGGTGGGTCGCCCAGGGAAGCCGTGAGACTGAGAGCTAG
AGCGGGTGAACGCACATCCCGCTGTCGCCTCCGCAACCTCCACGTCCAGAGTGCCGCCCCGCAG
CAAACCCACATGTTCTCCTCACTCTTCAAGTGAAATGTGCCTGCCGGGTGTCAGCTGGGTGCTG
TGTTCTCAGCCACTAAGAGTGAAATGGAAGGGCACCTTGGATGGAGCCCTGGTGTTCCAAACCA
GCCTGGGCAGCAGTGAGGTCTCACCTCAAACTGCAAACAGCAAAACAGTTGGAACCCACTTCTG
AGATTGCTCATTAGCAAGTGGATGTACAGGGTAACATGTCCAGTGTGTCGGAGGAGAGAAGAAA
AAGGCAGCACAGCATCAAGGACGGTCTACAGTTCATCCAGTCTCCACTGTCATATCCAGGGACC
CAGGAGCAGTATGCGGTGTATTTGCATGCTCTTGTGAGAAATCTTTTTAATGAAGGAAATGATG
TTTACCGGGAATGTGATTGGAGCGGCTCTCTACTTCAGTATTCAGAAGCTCTGAATATAGCAAG
TTATGCAAAGTCTGAAGAAATTTTAATTCCTAAAGAAATCATTGAAAAACTTCAGATAAATCGT
ATTGCCTGCTATTCTAATATGGGTCTCCATGATAAAGTTTTAGAAGACTGTAACGCTGTCCTCA
GTGTTAATGCCAGTAACTGCAAGGCTCTGTATCGGAAGGCTAAGGCTCTAAGTGACTTAAGGCG
CTACAGAGAGGCCTATGATGTCGTGGCAAAGTGCTCCTTAGCGGTGCCTCAGGATGAACATGTA
ATAAAGCTAACTCAAGAATTAGCTCAGAAATTGGGATTTAAAATAAGGAAAGCATATGTTAGAG
CTGAGCTCTCACTGAAAGCAGTTCCTGGGGACGGGGCTCCCAAGGCTGTGAACCATTCTGTGGA
AGATATTGAACCAGATTTGTTAACCCCAAGGCAAGAAGCACTTTCGGTTGTCTCCCTTCCCACA
TCCAGTTTTTCTCATGTTATTGGGAGTGAGCTGGCCTCGGTTCCTATTATGCCTGTAACTTCTG
TTTTACAACTGCAAGTGGATGAGAGCCCTCTGCCGTCCACAGTGTTTGCAAATGGAGGGAAGAT
CCCCTTCACCATATCAGAAGCTTTTCTGGATGATGACATTGTCCTTGGGGATGAAATAGATGCT
CTTCTTGATTCTGCCCCAGAAACTAACGATGCTGTTATGTCCTCCACCCTGGTCCGAGGACCCC
TCCCGACTGCCAGCGCAGCTCCAGGCTTCCCCTTCAGGGCACCATCCCTGCTTGGAACCTTGCC
CATTGGTGCAAGGTACGCTCCTGAGCCCTCCTTTGCAGAGTGCTTTCCACCTCTGACTTCACCC
TTGGAAGACTTCTACTCTTCTTTAAATGCATTTTCGGTGACTGAGTCCACTCGAGATCTGTCCA
CCTCAACTGCTAGAGAGGGAACAGCGCTTAACAGCAGTAACTCCTCCCTTTTACTTATGAATGG
ACCAGGTAGTTTGTTTGCCTCTGACAATTTTCTGGGAATTACAAGTCAGCCTAGCAATGACTGT
GGAAACTTGTTTGGAAGTGTGATCGCTAAACCATTTTCTTCAGGGACTCCTAGGCATCCCCTTG
AAGGAACCCACGAGCTGAGGCAAGCTTGCCAGATCTGCTTTGTAAAATCAGGCCCTAAGTTAAT
GGATTTCACATACCATGCTAATTTAGATCATAAATGTAAGAAAGATATTTTAATTGGTAGGATA
AAAAATGTTGAAGATAAATCATGGAAAAAAATACGTCCAAGACCAACAAAAACAAATTATGAAG
GACCATATTATATATGCAAAGATGTTGCTGCCGACGATGAATGTCGATATTCAGGCCACTGCAC
GTTTGCTTATTGCCAAGAAGAGATAGATGTGTGGACCCTGGAAAGGACAGGGGCCTTCAGTCGA
GAGGCTTTCTTTGGCGGCAATGGAAAGATCAGCCTGACTGTGGTCAAAATCCTCCAGGAGCACC
TTGGAGAGTTTACATTCCTTTGTGAGAAATGTTTTGATCATAAACCTAGAATGATAAGTAAAAG
AAATAAAGATAACTCTACTGCCTGTTCTCACCCGGTCACAAAGCATGAATTCGAGGACAATAAG
TGCCTTGTTCACATTTTGAGAGAGGCCACAGTAAAATATTCCAAAATACGGTCTTTTCATAAAC
AGTGTCAGCTTGACTTATGTCGACACGAAGTCCGTTATGGCTGCGTCAGGGAAGATGAGTGCTT
CTATGCCCACAGTCTTATTGAATTGAAAGTTTGGATAATGCAAAATGAAAGAGGTATCTCCCAT
GATGATATTGCTCAACAATCCAGACAGTACTGGAGAAGTTTGGAAGCAAGCCTGCCTGGACTGC
AGGTACTTGGTAATCAGATCATGCCTGGATTACTTAACATGGAGATAAAGTTTGTCTGTGCTCA
GTGTCTGAGAAATGGCCAAGTTACCGAACCCGACAGGAACAGGAAATACTGCAGTGCCAAAGCA
CAGCACTCGTGGACCAAAGAACGTCGTGCAATGAGAGCGATGTCTTTTGAACGTAAGAAGTGGA
TGAACATCCGTCCTCTCCCCACAAAGAAACAAATGCCTTTACAGTTTGATCTATGCAACCATAT
TGCTAATAGAAAAAAGTGTCAGTATGTTGGCAACTGTTCCTTTGCTCATAGTCCTGAGGAACGG
GAAGTGTGGACTTACATGAAGGATAACAAAATACATGATATAGAGCAGTTTTATGAACTCTGGC
TGAAGAACCAGAAAACTGAAAAAAGTGATGAGACATCCAGTCACTGTAGCAAAGAAAACGGGAA
GCAGATCCACATGCCAACAGACTATGCGGAAGTCACTGTGGACTTCCACTGCTGGATGTGTGGG
AAGAACTGTAACAGTGAGAAGCAGTGGCAAGACCACATCTCCTCCGAGAAGCACAAGGAGAAGG
TTTTCCACACTGAGGACGACCAGTACTGCTGGCAGCACCGCTTCCCCACAGGGTACTTCAGTGT
TTGTGACAGGTATATGGATGGCTCCTGCACAGAAGGAAGCAGCTGTAAATTTGCACATGGAAAT
GCTGAACTTCATGAATGGGAAGAGAGAAGGAAGGCCCTTCAGATGAAACTCCAGAAAGCACGGA
AAGATCATTTAATTGCCCCAAATGATAATGACTTTGGAAAATATAGTTTTTTGTTTAAAGATTT
AAAGTAATATGCTGGCTTTTATGTAACCCAATCGGAGCACTGACCAGAAAAATTGCAGGTGTTG
AACGGCGCATAGCAGAGGAGCTGCAGATTTTCTGCTTGATCAGCATCTATCGTTCCTCCTGAGC
AGCAACCATAGTAGATAGGACAGGCTGTTTGACAGGCCTGGCTAGGCTCTGTGCAGCCACTGGC
ATCAGATGGCGGCGACTTGCTTCCAGGTTGCACTCTGTTGGATAGAAGTTTGGCTGAGGTGTGT
TGGGGAAGAGGGTAAGGTTCAGGATGACTCTAAGGGAAGAACCATGGCCACGAGAGAATAATGT
ACACTGGGATTGGAATGAGCGAGGGATGAAATTCCCTCTGTGTTTTAGTGGAATGAATGTATTT
AATAAAATAATAAAGTCTGCTACTTATCTGTATGTAGGTTGCTAAAAAGGATTTTCTTAACTCA
GATTTTTAAGCCAAATAACCATTTAGCACTAGGGTCTGTTAAATGGGTATTTTCTGTATTTGTA
TGTCTCACTGTGATAAGGGAACTGATGATCATGCACATCAAGAATATTTTAAAAGTAATCAGTG
GACACAAATTTTATTTCTTGGTCTTTTGCTGCTTAAATGATGATTTTTGAAAGATTAAACTTGT
ACTGCTGGTATTGTGTAGCGTATGGACCGATATTGCTTGTAATAAAAGATTTTACATAGAGATG
A

hide sequence

RefSeq Acc Id:

XM_039086257 ⟹ XP_038942185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	5,003,827 - 5,019,637 (+)	NCBI
mRatBN7.2	10	4,496,853 - 4,512,668 (+)	NCBI

RefSeq Acc Id:

XM_063269280 ⟹ XP_063125350

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	4,980,374 - 5,019,637 (+)	NCBI

RefSeq Acc Id:

XM_063269281 ⟹ XP_063125351

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	4,982,337 - 5,019,637 (+)	NCBI

RefSeq Acc Id:

XM_063269282 ⟹ XP_063125352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	4,980,147 - 5,015,874 (+)	NCBI

RefSeq Acc Id:

XR_594546

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	4,980,147 - 5,015,874 (+)	NCBI
mRatBN7.2	10	4,473,177 - 4,512,668 (+)	NCBI
Rnor_6.0	10	4,535,651 - 4,575,642 (+)	NCBI

Sequence:

show sequence

TTGTTTTCAAGACGATAAAAATAGTGACTGAGAATAATTACCTATGGAATAGGGAATTGAGAAC
AGCTTTCGGAGAGAATGACGCTCCCGGCGCCCAAATGAGTTTAGGTACCTGCCATTTATTTGAT
TAGGACAACTGTATGGCTGGATTTTTTTGGTTTTTTGTTTGTTTTTTTCAGGGTGACGGTAACG
GAGTCGGAATGCAGAGAAGGACGCTCGGCATAAGTTGCTGCAAGGAACAAATTCCGGAGAAAGT
GACACCTGTGCGCAGATGAATCTAGGTCTCCTTCTCTAGTCCAAGGGCCGTGGGAGAGGGCGAG
GACACTGGGCTCACGAGCTTGCGGTCGCTCACCCCTTTCCGTGTGACCACCTCGGGTTCCGCCT
ATCGCCGCCGCTTCCGCAGCCCCAAGGCCCCGACGTGGCGCCTCCATTCCTGGCCTGACGCTGG
CAGCGCAGCCAATGGTGGCGTCTGCGGGGCGGCACGCAAGGCCTCCCGCCGCCAGAGGGCGCCG
CCCCGAGCGTCGCGGGCTGGCTGCTGCGGTGGGTCGCCCAGGGAAGCCGTGAGACTGAGAGCTA
GAGCGGGTGAACGCACATCCCGCTGTCGCCTCCGCAACCTCCACGTCCAGAGTGCCGCCCCGCA
GATTGCTCATTAGCAAGTGGATGTACAGGGTAACATGTCCAGTGTGTCGGAGGAGAGAAGAAAA
AGGCAGCACAGCATCAAGGACGGTCTACAGTTCATCCAGTCTCCACTGTCATATCCAGGGACCC
AGGAGCAGTATGCGGTGTATTTGCATGCTCTTGTGAGAAATCTTTTTAATGAAGGAAATGATGT
TTACCGGGAATGTGATTGGAGCGGCTCTCTACTTCAGTATTCAGAAGCTCTGAATATAGCAAGT
TATGCAAAGTCTGAAGAAATTTTAATTCCTAAAGAAATCATTGAAAAACTTCAGATAAATCGTA
TTGCCTGCTATTCTAATATGGGTCTCCATGATAAAGTTTTAGAAGACTGTAACGCTGTCCTCAG
TGTTAATGCCAGTAACTGCAAGGCTCTGTATCGGAAGGCTAAGGCTCTAAGTGACTTAAGGCGC
TACAGAGAGGCCTATGATGTCGTGGCAAAGTGCTCCTTAGCGGTGCCTCAGGATGAACATGTAA
TAAAGCTAACTCAAGAATTAGCTCAGAAATTGGGATTTAAAATAAGGAAAGCATATGTTAGAGC
TGAGCTCTCACTGAAAGCAGTTCCTGGGGACGGGGCTCCCAAGGCTGTGAACCATTCTGTGGAA
GATATTGAACCAGATTTGTTAACCCCAAGGCAAGAAGCACTTTCGGTTGTCTCCCTTCCCACAT
CCAGTTTTTCTCATGTTATTGGGAGTGAGCTGGCCTCGGTTCCTATTATGCCTGTAACTTCTGT
TTTACAACTGCAAGTGGATGAGAGCCCTCTGCCGTCCACAGTGTTTGCAAATGGAGGGAAGATC
CCCTTCACCATATCAGAAGCTTTTCTGGATGATGACATTGTCCTTGGGGATGAAATAGATGCTC
TTCTTGATTCTGCCCCAGAAACTAACGATGCTGTTATGTCCTCCACCCTGGTCCGAGGACCCCT
CCCGACTGCCAGCGCAGCTCCAGGCTTCCCCTTCAGGGCACCATCCCTGCTTGGAACCTTGCCC
ATTGGTGCAAGGTACGCTCCTGAGCCCTCCTTTGCAGAGTGCTTTCCACCTCTGACTTCACCCT
TGGAAGACTTCTACTCTTCTTTAAATGCATTTTCGGTGACTGAGTCCACTCGAGATCTGTCCAC
CTCAACTGCTAGAGAGGGAACAGCGCTTAACAGCAGTAACTCCTCCCTTTTACTTATGAATGGA
CCAGGTAGTTTGTTTGCCTCTGACAATTTTCTGGGAATTACAAGTCAGCCTAGCAATGACTGTG
GAAACTTGTTTGGAAGTGTGATCGCTAAACCATTTTCTTCAGGGACTCCTAGGCATCCCCTTGA
AGGAACCCACGAGCTGAGGCAAGCTTGCCAGATCTGCTTTGTAAAATCAGGCCCTAAGTTAATG
GATTTCACATACCATGCTAATTTAGATCATAAATGTAAGAAAGATATTTTAATTGGTAGGATAA
AAAATGTTGAAGATAAATCATGGAAAAAAATACGTCCAAGACCAACAAAAACAAATTATGAAGG
ACCATATTATATATGCAAAGATGTTGCTGCCGACGATGAATGTCGATATTCAGGCCACTGCACG
TTTGCTTATTGCCAAGAAGAGATAGATGTGTGGACCCTGGAAAGGACAGGGGCCTTCAGTCGAG
AGGCTTTCTTTGGCGGCAATGGAAAGATCAGCCTGACTGTGGTCAAAATCCTCCAGGAGCACCT
TGGAGAGTTTACATTCCTTTGTGAGAAATGTTTTGATCATAAACCTAGAATGATAAGTAAAAGA
AATAAAGATAACTCTACTGCCTGTTCTCACCCGGTCACAAAGCATGAATTCGAGGACAATAAGT
GCCTTGTTCACATTTTGAGAGAGGCCACAGTAAAATATTCCAAAATACGGTCTTTTCATAAACA
GTGTCAGCTTGACTTATGTCGACACGAAGTCCGTTATGGCTGCGTCAGGGAAGATGAGTGCTTC
TATGCCCACAGTCTTATTGAATTGAAAGTTTGGATAATGCAAAATGAAAGAGGTATCTCCCATG
ATGATATTGCTCAACAATCCAGACAGTACTGGAGAAGTTTGGAAGCAAGCCTGCCTGGACTGCA
GGTACTTGGTAATCAGATCATGCCTGGATTACTTAACATGGAGATAAAGTTTGTCTGTGCTCAG
TGTCTGAGAAATGGCCAAGTTACCGAACCCGACAGGAACAGGAAATACTGCAGTGCCAAAGCAC
AGCACTCGTGGACCAAAGAACGTCGTGCAATGAGAGCGATGTCTTTTGAACCTATGCAACCATA
TTGCTAATAGAAAAAAGTGTCAGTATGTTGGCAACTGTTCCTTTGCTCATAGTCCTGAGGAACG
GGAAGTGTGGACTTACATGAAGGATAACAAAATACATGATATAGAGCAGTTTTATGAACTCTGG
CTGAAGAACCAGAAAACTGAAAAAAGTGATGAGACATCCAGTCACTGTAGCAAAGAAAACGGGA
AGCAGATCCACATGCCAACAGACTATGCGGAAGTCACTGTGGACTTCCACTGCTGGATGTGTGG
GAAGAACTGTAACAGTGAGAAGCAGTGGCAAGACCACATCTCCTCCGAGAAGCACAAGGAGAAG
GTTTTCCACACTGAGGACGACCAGTACTGCTGGCAGCACCGCTTCCCCACAGGGTACTTCAGTG
TTTGTGACAGGTATATGGATGGCTCCTGCACAGAAGGAAGCAGCTGTAAATTTGCACATGGAAA
TGCTGAACTTCATGAATGGGAAGAGAGAAGGAAGGCCCTTCAGATGAAACTCCAGAAAGCACGG
AAAGATCATTTAATTGCCCCAAATGATAATGACTTTGGAAAATATAGTTTTTTGTTTAAAGATT
TAAAGTAATATGCTGGCTTTTATGTAACCCAATCGGAGCACTGACCAGAAAAATTGCAGGTGTT
GAACGGCGCATAGCAGAGGAGCTGCAGATTTTCTGCTTGATCAGCATCTATCGTTCCTCCTGAG
CAGCAACCATAGTAGATAGGACAGGCTGTTTGACAGGCCTGGCTAGGCTCTGTGCAGCCACTGG
CATCAGATGGCGGCGACTTGCTTCCAGGTTGCACTCTGTTGGATAGAAGTTTGGCTGAGGTGTG
TTGGGGAAGAGGGTAAGGTTCAGGATGACTCTAAGGGAAGAACCATGGCCACGAGAGAATAATG
TACACTGGGATTGGAATGAGCGAGGGATGAAATTCCCTCTGTGTTTTAGTGGAATGAATGTATT
TAATAAAATAATAAAGTCTGCTACTTATCTGTATGTAGGTTGCTAAAAAGGATTTTCTTAACTC
AGATTTTTAAGCCAAATAACCATTTAGCACTAGGGTCTGTTAAATGGGTATTTTCTGTATTTGT
ATGTCTCACTGTGATAAGGGAACTGATGATCATGCACATCAAGAATATTTTAAAAGTAATCAGT
GGACACAAATTTTATTTCTTGGTCTTTTGCTGCTTAAATGATGATTTTTGAAAGATTAAACTTG
TACTGCTGGTATTGTGTAGCGTATGGACCGATATTGCTTGTAATAAAAGATTTTACATAGAGAT
GA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101732	(Get FASTA)	NCBI Sequence Viewer
	XP_008765712	(Get FASTA)	NCBI Sequence Viewer
	XP_038942185	(Get FASTA)	NCBI Sequence Viewer
	XP_063125350	(Get FASTA)	NCBI Sequence Viewer
	XP_063125351	(Get FASTA)	NCBI Sequence Viewer
	XP_063125352	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL96200	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003309
	ENSRNOP00000003309.7
	ENSRNOP00000100952.1
	ENSRNOP00000108427
	ENSRNOP00000108427.1
	ENSRNOP00000108870.1

RefSeq Acc Id:

NP_001101732 ⟸ NM_001108262

- UniProtKB:

D3ZP12 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSVSEERRKRQHSIKDGLQFIQSPLSYPGTQEQYAVYLHALVRNLFNEGNDVYRECDWSGSLL
QYSEALNIASYAKSEEILIPKEIIEKLQINRIACYSNMGLHDKVLEDCNAVLSVNASNCKALYR
KAKALSDLRRYREAYDVVAKCSLAVPQDEHVIKLTQELAQKLGFKIRKAYVRAELSLKAVPGDG
APKAVNHSVEDIEPVFANGGKIPFTISEAFLDDDIVLGDEIDALLDSAPETNDAVMSSTLVRGP
LPTASAAPGFPFRAPSLLGTLPIGARYAPEPSFAECFPPLTSPLEDFYSSLNAFSVTESTRDLS
TSTAREGTALNSSNSSLLLMNGPGSLFASDNFLGITSQPSNDCGNLFGSVIAKPFSSGTPRHPL
EGTHELRQACQICFVKSGPKLMDFTYHANLDHKCKKDILIGRIKNVEDKSWKKIRPRPTKTNYE
GPYYICKDVAADDECRYSGHCTFAYCQEEIDVWTLERTGAFSREAFFGGNGKISLTVVKILQEH
LGEFTFLCEKCFDHKPRMISKRNKDNSTACSHPVTKHEFEDNKCLVHILREATVKYSKIRSFHK
QCQLDLCRHEVRYGCVREDECFYAHSLIELKVWIMQNERGISHDDIAQQSRQYWRSLEASLPGL
QVLGNQIMPGLLNMEIKFVCAQCLRNGQVTEPDRNRKYCSAKAQHSWTKERRAMRAMSFEPMQP
YC

hide sequence

RefSeq Acc Id:	XP_008765712 ⟸ XM_008767490
- Peptide Label:	isoform X1
- UniProtKB:	D3ZP12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSVSEERRKRQHSIKDGLQFIQSPLSYPGTQEQYAVYLHALVRNLFNEGNDVYRECDWSGSLL QYSEALNIASYAKSEEILIPKEIIEKLQINRIACYSNMGLHDKVLEDCNAVLSVNASNCKALYR KAKALSDLRRYREAYDVVAKCSLAVPQDEHVIKLTQELAQKLGFKIRKAYVRAELSLKAVPGDG APKAVNHSVEDIEPDLLTPRQEALSVVSLPTSSFSHVIGSELASVPIMPVTSVLQLQVDESPLP STVFANGGKIPFTISEAFLDDDIVLGDEIDALLDSAPETNDAVMSSTLVRGPLPTASAAPGFPF RAPSLLGTLPIGARYAPEPSFAECFPPLTSPLEDFYSSLNAFSVTESTRDLSTSTAREGTALNS SNSSLLLMNGPGSLFASDNFLGITSQPSNDCGNLFGSVIAKPFSSGTPRHPLEGTHELRQACQI CFVKSGPKLMDFTYHANLDHKCKKDILIGRIKNVEDKSWKKIRPRPTKTNYEGPYYICKDVAAD DECRYSGHCTFAYCQEEIDVWTLERTGAFSREAFFGGNGKISLTVVKILQEHLGEFTFLCEKCF DHKPRMISKRNKDNSTACSHPVTKHEFEDNKCLVHILREATVKYSKIRSFHKQCQLDLCRHEVR YGCVREDECFYAHSLIELKVWIMQNERGISHDDIAQQSRQYWRSLEASLPGLQVLGNQIMPGLL NMEIKFVCAQCLRNGQVTEPDRNRKYCSAKAQHSWTKERRAMRAMSFERKKWMNIRPLPTKKQM PLQFDLCNHIANRKKCQYVGNCSFAHSPEEREVWTYMKDNKIHDIEQFYELWLKNQKTEKSDET SSHCSKENGKQIHMPTDYAEVTVDFHCWMCGKNCNSEKQWQDHISSEKHKEKVFHTEDDQYCWQ HRFPTGYFSVCDRYMDGSCTEGSSCKFAHGNAELHEWEERRKALQMKLQKARKDHLIAPNDNDF GKYSFLFKDLK hide sequence

Ensembl Acc Id:

ENSRNOP00000069541 ⟸ ENSRNOT00000084151

Ensembl Acc Id:

ENSRNOP00000003309 ⟸ ENSRNOT00000003309

RefSeq Acc Id:	XP_038942185 ⟸ XM_039086257
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063125352 ⟸ XM_063269282
- Peptide Label:	isoform X2
- UniProtKB:	A6K4H8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125350 ⟸ XM_063269280
- Peptide Label:	isoform X1
- UniProtKB:	D3ZP12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125351 ⟸ XM_063269281
- Peptide Label:	isoform X1
- UniProtKB:	D3ZP12 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000108870 ⟸ ENSRNOT00000164957

Ensembl Acc Id:

ENSRNOP00000100952 ⟸ ENSRNOT00000149199

Ensembl Acc Id:

ENSRNOP00000108427 ⟸ ENSRNOT00000150174

Protein Domains

C3H1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JVM3-F1-model_v2	AlphaFold	A0A0G2JVM3	1-971	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311225	AgrOrtholog
BioCyc Gene	G2FUF-26162	BioCyc
Ensembl Genes	ENSRNOG00000002420	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003309	ENTREZGENE
	ENSRNOT00000003309.9	UniProtKB/TrEMBL
	ENSRNOT00000149199.1	UniProtKB/TrEMBL
	ENSRNOT00000150174	ENTREZGENE
	ENSRNOT00000150174.1	UniProtKB/TrEMBL
	ENSRNOT00000164957.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	TPR-like_helical	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
	ZC3H7A/B	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
	Znf_CCCH	UniProtKB/TrEMBL
	Znf_CCCH_sf	UniProtKB/TrEMBL
KEGG Report	rno:360466	UniProtKB/TrEMBL
NCBI Gene	360466	ENTREZGENE
PANTHER	PTHR14928	UniProtKB/TrEMBL
	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7A	UniProtKB/TrEMBL
Pfam	zf-CCCH	UniProtKB/TrEMBL
PhenoGen	Zc3h7a	PhenoGen
PROSITE	ZF_C3H1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002420	RatGTEx
SMART	TPR	UniProtKB/TrEMBL
	ZnF_C3H1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
	SSF90229	UniProtKB/TrEMBL
UniProt	A0ABK0LCJ0_RAT	UniProtKB/TrEMBL
	A0ABK0LCV1_RAT	UniProtKB/TrEMBL
	A0ABK0LDN6_RAT	UniProtKB/TrEMBL
	A6K4H8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZP12	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Zc3h7a	zinc finger CCCH type containing 7 A	LOC103694286	uncharacterized LOC103694286	Data merged from RGD:9361826	737654	PROVISIONAL
2014-08-25	LOC103694286	uncharacterized LOC103694286			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Zc3h7a	zinc finger CCCH type containing 7 A	Zc3h7a_predicted	zinc finger CCCH type containing 7 A (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Zc3h7a_predicted	zinc finger CCCH type containing 7 A (predicted)	Zc3hdc7_predicted	zinc finger CCCH type domain containing 7 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Zc3hdc7_predicted	zinc finger CCCH type domain containing 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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