Dnai7 (dynein axonemal intermediate chain 7) - Rat Genome Database

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Gene: Dnai7 (dynein axonemal intermediate chain 7) Rattus norvegicus
Analyze
Symbol: Dnai7
Name: dynein axonemal intermediate chain 7
RGD ID: 1311213
Description: Predicted to enable beta-tubulin binding activity and microtubule binding activity. Predicted to be located in cilium; cytoplasm; and microtubule cytoskeleton. Predicted to be part of axonemal dynein complex. Predicted to be active in axoneme and cytoplasmic microtubule. Orthologous to human DNAI7 (dynein axonemal intermediate chain 7); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cancer susceptibility 1; cancer susceptibility candidate 1; Casc1; Cfap94; cilia and flagella associated protein 94; dynein intermediate chain CFAP94, axonemal; Las1; LOC297720; lung adenoma susceptibility 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84179,874,338 - 179,910,716 (-)NCBIGRCr8
mRatBN7.24178,143,499 - 178,179,871 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4178,143,500 - 178,179,980 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4184,444,178 - 184,480,647 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04180,228,678 - 180,265,147 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04178,849,095 - 178,885,568 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04179,440,984 - 179,476,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,440,953 - 179,477,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04243,622,214 - 243,658,236 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44182,823,026 - 182,859,566 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14183,068,145 - 183,104,849 (-)NCBI
Celera4166,662,914 - 166,699,171 (-)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Candidate lung tumor susceptibility genes identified through whole-genome association analyses in inbred mice. Liu P, etal., Nat Genet. 2006 Aug;38(8):888-95. Epub 2006 Jul 23.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Mechanisms promoting escape from mitotic stress-induced tumor cell death. Sinnott R, etal., Cancer Res. 2014 Jul 15;74(14):3857-69. doi: 10.1158/0008-5472.CAN-13-3398. Epub 2014 May 23.
7. Positional cloning of the major quantitative trait locus underlying lung tumor susceptibility in mice. Zhang Z, etal., Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12642-7. doi: 10.1073/pnas.2133947100.
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:17974961  


Genomics

Comparative Map Data
Dnai7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84179,874,338 - 179,910,716 (-)NCBIGRCr8
mRatBN7.24178,143,499 - 178,179,871 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4178,143,500 - 178,179,980 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4184,444,178 - 184,480,647 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04180,228,678 - 180,265,147 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04178,849,095 - 178,885,568 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04179,440,984 - 179,476,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,440,953 - 179,477,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04243,622,214 - 243,658,236 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44182,823,026 - 182,859,566 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14183,068,145 - 183,104,849 (-)NCBI
Celera4166,662,914 - 166,699,171 (-)NCBICelera
Cytogenetic Map4q44NCBI
DNAI7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,107,047 - 25,195,160 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,108,289 - 25,195,162 (-)EnsemblGRCh38hg38GRCh38
GRCh371225,261,223 - 25,348,094 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361225,152,490 - 25,239,361 (-)NCBINCBI36Build 36hg18NCBI36
Build 341225,152,489 - 25,239,361NCBI
Celera1230,408,204 - 30,495,049 (-)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1225,031,916 - 25,118,815 (-)NCBIHuRef
CHM1_11225,226,353 - 25,313,239 (-)NCBICHM1_1
T2T-CHM13v2.01224,977,958 - 25,066,403 (-)NCBIT2T-CHM13v2.0
Dnai7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396145,120,556 - 145,156,866 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6145,120,560 - 145,156,731 (-)EnsemblGRCm39 Ensembl
GRCm386145,174,833 - 145,211,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6145,174,834 - 145,211,005 (-)EnsemblGRCm38mm10GRCm38
MGSCv376145,123,392 - 145,159,490 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366145,132,084 - 145,168,060 (-)NCBIMGSCv36mm8
Celera6148,249,078 - 148,285,257 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.37NCBI
Dnai7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541320,227,903 - 20,287,131 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541320,227,807 - 20,287,211 (-)NCBIChiLan1.0ChiLan1.0
DNAI7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21071,620,868 - 71,707,847 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11271,617,264 - 71,704,233 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01261,117,886 - 61,204,888 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11263,733,801 - 63,819,991 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1263,733,785 - 63,819,991 (+)Ensemblpanpan1.1panPan2
DNAI7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12722,309,705 - 22,369,052 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2722,303,849 - 22,369,051 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2723,999,487 - 24,071,297 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02722,502,481 - 22,568,288 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2722,502,580 - 22,568,282 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12722,317,692 - 22,384,301 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02722,336,520 - 22,403,282 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02724,171,481 - 24,238,226 (-)NCBIUU_Cfam_GSD_1.0
Dnai7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494584,200,357 - 84,274,388 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365482,123,360 - 2,202,032 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365482,123,248 - 2,197,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAI7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl548,555,688 - 48,651,365 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1548,555,637 - 48,651,370 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DNAI7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11124,871,767 - 24,953,586 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1124,875,416 - 24,953,375 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606910,173,735 - 10,255,300 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnai7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475213,855,426 - 13,936,764 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475213,855,328 - 13,932,210 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnai7
287 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:106
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000030680
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat

Markers in Region
RH132020  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24178,143,532 - 178,143,724 (+)MAPPERmRatBN7.2
Rnor_6.04179,441,018 - 179,441,209NCBIRnor6.0
Rnor_5.04243,622,248 - 243,622,439UniSTSRnor5.0
RGSC_v3.44182,823,060 - 182,823,251UniSTSRGSC3.4
Celera4166,662,948 - 166,663,139UniSTS
RH 3.4 Map41066.7UniSTS
Cytogenetic Map4q44UniSTS
RH133694  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24178,165,429 - 178,165,620 (+)MAPPERmRatBN7.2
Rnor_6.04179,462,571 - 179,462,761NCBIRnor6.0
Rnor_5.04243,643,875 - 243,644,065UniSTSRnor5.0
RGSC_v3.44182,845,204 - 182,845,394UniSTSRGSC3.4
Celera4166,684,953 - 166,685,143UniSTS
RH 3.4 Map41066.9UniSTS
Cytogenetic Map4q44UniSTS
AA943468  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24178,180,185 - 178,180,307 (+)MAPPERmRatBN7.2
Rnor_6.04179,477,326 - 179,477,447NCBIRnor6.0
Rnor_5.04243,658,630 - 243,658,751UniSTSRnor5.0
RGSC_v3.44182,859,960 - 182,860,081UniSTSRGSC3.4
Celera4166,699,565 - 166,699,686UniSTS
RH 3.4 Map41077.3UniSTS
Cytogenetic Map4q44UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 5 16 17 11
Low 1 43 49 35 14 35 8 11 58 35 24 8
Below cutoff 6 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC160907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF546873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF562765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM388768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB695629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO386521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV108923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV722478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000030680   ⟹   ENSRNOP00000035058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4178,143,500 - 178,179,980 (-)Ensembl
Rnor_6.0 Ensembl4179,440,953 - 179,477,070 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099666   ⟹   ENSRNOP00000090357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4178,143,500 - 178,173,415 (-)Ensembl
RefSeq Acc Id: NM_001106627   ⟹   NP_001100097
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,910,629 (-)NCBI
mRatBN7.24178,143,499 - 178,179,792 (-)NCBI
Rnor_6.04179,440,984 - 179,476,932 (-)NCBI
Rnor_5.04243,622,214 - 243,658,236 (-)NCBI
RGSC_v3.44182,823,026 - 182,859,566 (-)RGD
Celera4166,662,914 - 166,699,171 (-)RGD
Sequence:
RefSeq Acc Id: XM_039107466   ⟹   XP_038963394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,910,698 (-)NCBI
mRatBN7.24178,143,499 - 178,179,865 (-)NCBI
RefSeq Acc Id: XM_039107467   ⟹   XP_038963395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,910,698 (-)NCBI
mRatBN7.24178,143,499 - 178,179,865 (-)NCBI
RefSeq Acc Id: XM_039107468   ⟹   XP_038963396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,899,691 (-)NCBI
mRatBN7.24178,143,499 - 178,168,849 (-)NCBI
RefSeq Acc Id: XM_039107469   ⟹   XP_038963397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,906,142 (-)NCBI
mRatBN7.24178,143,499 - 178,177,269 (-)NCBI
RefSeq Acc Id: XM_039107470   ⟹   XP_038963398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,910,716 (-)NCBI
mRatBN7.24178,143,499 - 178,179,871 (-)NCBI
RefSeq Acc Id: XM_039107472   ⟹   XP_038963400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,906,142 (-)NCBI
mRatBN7.24178,143,499 - 178,177,268 (-)NCBI
RefSeq Acc Id: XM_039107473   ⟹   XP_038963401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,910,710 (-)NCBI
mRatBN7.24178,143,499 - 178,179,865 (-)NCBI
RefSeq Acc Id: XM_039107474   ⟹   XP_038963402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,910,710 (-)NCBI
mRatBN7.24178,143,499 - 178,179,865 (-)NCBI
RefSeq Acc Id: XM_039107475   ⟹   XP_038963403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,910,698 (-)NCBI
mRatBN7.24178,150,479 - 178,179,865 (-)NCBI
RefSeq Acc Id: XM_039107476   ⟹   XP_038963404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,874,338 - 179,910,698 (-)NCBI
mRatBN7.24178,150,479 - 178,179,865 (-)NCBI
RefSeq Acc Id: XM_039107477   ⟹   XP_038963405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,880,406 - 179,910,698 (-)NCBI
mRatBN7.24178,149,567 - 178,179,865 (-)NCBI
RefSeq Acc Id: XM_039107478   ⟹   XP_038963406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,886,444 - 179,910,698 (-)NCBI
mRatBN7.24178,160,198 - 178,179,865 (-)NCBI
RefSeq Acc Id: XM_039107479   ⟹   XP_038963407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84179,884,526 - 179,910,698 (-)NCBI
mRatBN7.24178,153,688 - 178,179,865 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001100097   ⟸   NM_001106627
- UniProtKB: B1H288 (UniProtKB/TrEMBL),   A0A8I6ACC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000035058   ⟸   ENSRNOT00000030680
RefSeq Acc Id: XP_038963398   ⟸   XM_039107470
- Peptide Label: isoform X5
- UniProtKB: A0A8I6ACC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963402   ⟸   XM_039107474
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ACC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963401   ⟸   XM_039107473
- Peptide Label: isoform X4
- UniProtKB: A0A8I6ACC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963395   ⟸   XM_039107467
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ACC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963394   ⟸   XM_039107466
- Peptide Label: isoform X1
- UniProtKB: F7FKY0 (UniProtKB/TrEMBL),   A0A8I6ACC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963397   ⟸   XM_039107469
- Peptide Label: isoform X4
- UniProtKB: A0A8I6ACC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963400   ⟸   XM_039107472
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ACC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963396   ⟸   XM_039107468
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ACC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963405   ⟸   XM_039107477
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038963404   ⟸   XM_039107476
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038963403   ⟸   XM_039107475
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038963407   ⟸   XM_039107479
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038963406   ⟸   XM_039107478
- Peptide Label: isoform X10
RefSeq Acc Id: ENSRNOP00000090357   ⟸   ENSRNOT00000099666
Protein Domains
IC97/Casc1 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1H288-F1-model_v2 AlphaFold B1H288 1-730 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311213 AgrOrtholog
BioCyc Gene G2FUF-42459 BioCyc
Ensembl Genes ENSRNOG00000027630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030680.6 UniProtKB/TrEMBL
  ENSRNOT00000099666.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7455489 IMAGE-MGC_LOAD
InterPro Casc1 UniProtKB/TrEMBL
  Casc1_N UniProtKB/TrEMBL
KEGG Report rno:297720 UniProtKB/TrEMBL
MGC_CLONE MGC:188640 IMAGE-MGC_LOAD
NCBI Gene 297720 ENTREZGENE
PANTHER DYNEIN AXONEMAL INTERMEDIATE CHAIN 7 UniProtKB/TrEMBL
  PTHR20929 UniProtKB/TrEMBL
Pfam Casc1_N UniProtKB/TrEMBL
PhenoGen Dnai7 PhenoGen
PRINTS CANCERSCCP1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027630 RatGTEx
UniProt A0A8I6ACC4 ENTREZGENE, UniProtKB/TrEMBL
  B1H288 ENTREZGENE, UniProtKB/TrEMBL
  F7FKY0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-18 Dnai7  dynein axonemal intermediate chain 7  Cfap94  cilia and flagella associated protein 94  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2020-05-22 Cfap94  cilia and flagella associated protein 94  Casc1  cancer susceptibility 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-02-01 Casc1  cancer susceptibility 1  Casc1  cancer susceptibility candidate 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Casc1  cancer susceptibility candidate 1   Casc1_predicted  cancer susceptibility candidate 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Casc1_predicted  cancer susceptibility candidate 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED