Rbfox1 (RNA binding fox-1 homolog 1) - Rat Genome Database

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Gene: Rbfox1 (RNA binding fox-1 homolog 1) Rattus norvegicus
Analyze
Symbol: Rbfox1
Name: RNA binding fox-1 homolog 1
RGD ID: 1311210
Description: Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in nervous system development and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within neuromuscular process controlling balance and regulation of skeletal muscle cell differentiation. Predicted to be located in cytoplasmic stress granule; nuclear stress granule; and trans-Golgi network. Predicted to be active in cytoplasm and nucleus. Orthologous to human RBFOX1 (RNA binding fox-1 homolog 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: A2bp1; ataxin 2 binding protein 1; bol, boule-like (Drosophila); Boll; fox-1 homolog A; LOC302920; RNA binding protein fox-1 homolog 1; RNA binding protein, fox-1 homolog (C. elegans) 1; RNA binding protein, fox-1 homolog 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8108,658,809 - 10,754,648 (-)NCBIGRCr8
mRatBN7.2108,152,198 - 10,248,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl108,152,198 - 9,686,659 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1012,854,706 - 13,195,257 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01012,345,337 - 12,686,155 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0108,002,626 - 8,343,153 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0108,312,961 - 10,437,778 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl108,312,961 - 8,654,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0107,109,396 - 7,482,255 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4108,213,474 - 8,561,580 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1108,216,011 - 8,561,515 (-)NCBI
Celera107,132,939 - 7,472,569 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Characterization of CaV1.2 exon 33 heterozygous knockout mice and negative correlation between Rbfox1 and CaV1.2 exon 33 expressions in human heart failure. Wang J, etal., Channels (Austin). 2018 Jan 1;12(1):51-57. doi: 10.1080/19336950.2017.1381805.
Additional References at PubMed
PMID:10814712   PMID:20724578   PMID:21177649   PMID:22357600   PMID:23300487   PMID:23349951   PMID:23918472   PMID:27378374   PMID:29358748   PMID:32248729  


Genomics

Comparative Map Data
Rbfox1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8108,658,809 - 10,754,648 (-)NCBIGRCr8
mRatBN7.2108,152,198 - 10,248,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl108,152,198 - 9,686,659 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1012,854,706 - 13,195,257 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01012,345,337 - 12,686,155 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0108,002,626 - 8,343,153 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0108,312,961 - 10,437,778 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl108,312,961 - 8,654,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0107,109,396 - 7,482,255 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4108,213,474 - 8,561,580 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1108,216,011 - 8,561,515 (-)NCBI
Celera107,132,939 - 7,472,569 (-)NCBICelera
Cytogenetic Map10q12NCBI
RBFOX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38165,239,721 - 7,713,340 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl165,239,802 - 7,713,340 (+)EnsemblGRCh38hg38GRCh38
GRCh37166,069,025 - 7,763,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36166,009,133 - 7,702,500 (+)NCBINCBI36Build 36hg18NCBI36
Celera166,278,710 - 7,977,033 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef166,033,145 - 7,728,991 (+)NCBIHuRef
CHM1_1166,071,131 - 7,764,167 (+)NCBICHM1_1
T2T-CHM13v2.0165,269,380 - 7,744,948 (+)NCBIT2T-CHM13v2.0
Rbfox1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39165,702,566 - 7,230,344 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl165,703,219 - 7,229,390 (+)EnsemblGRCm39 Ensembl
GRCm38165,884,793 - 7,412,480 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,885,355 - 7,411,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv37165,884,886 - 7,412,573 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36165,800,319 - 7,326,847 (+)NCBIMGSCv36mm8
Celera166,516,973 - 8,058,700 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map163.34NCBI
Rbfox1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544210,344,365 - 10,908,434 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544210,345,261 - 10,694,602 (-)NCBIChiLan1.0ChiLan1.0
RBFOX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2185,767,287 - 8,246,570 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,557,393 - 12,037,776 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0164,162,659 - 6,640,962 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1165,415,947 - 7,889,215 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl165,418,607 - 7,889,215 (+)Ensemblpanpan1.1panPan2
RBFOX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1634,218,276 - 36,255,529 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl634,220,648 - 36,255,384 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha635,609,952 - 37,647,214 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0634,421,178 - 36,456,830 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl634,422,071 - 36,456,879 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1634,218,561 - 36,256,306 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0634,090,868 - 36,147,046 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0634,513,003 - 36,547,216 (-)NCBIUU_Cfam_GSD_1.0
Rbfox1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344107,414,183 - 108,998,589 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365306,306,877 - 6,845,073 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365305,259,612 - 6,843,668 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBFOX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl334,939,573 - 37,300,810 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1334,938,703 - 37,209,772 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2335,870,791 - 36,254,430 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBFOX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,896,225 - 7,365,137 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606822,855,140 - 25,753,876 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbfox1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248244,550,670 - 5,113,842 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248242,997,980 - 5,113,744 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbfox1
13998 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:480
Count of miRNA genes:246
Interacting mature miRNAs:332
Transcripts:ENSRNOT00000066534
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat

Markers in Region
D10Got16  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2108,284,055 - 8,284,301 (+)MAPPERmRatBN7.2
Rnor_6.0108,443,686 - 8,443,931NCBIRnor6.0
Rnor_5.0107,240,984 - 7,241,229UniSTSRnor5.0
RGSC_v3.4108,348,123 - 8,348,369RGDRGSC3.4
RGSC_v3.4108,348,124 - 8,348,369UniSTSRGSC3.4
RGSC_v3.1108,348,123 - 8,348,369RGD
Celera107,264,192 - 7,264,437UniSTS
RH 2.0 Map100.0RGD
Cytogenetic Map10q12UniSTS
D10Got19  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0108,858,188 - 8,858,307NCBIRnor6.0
Rnor_5.0107,647,226 - 7,647,345UniSTSRnor5.0
RGSC_v3.4108,773,227 - 8,773,346RGDRGSC3.4
RGSC_v3.4108,773,228 - 8,773,347UniSTSRGSC3.4
RGSC_v3.1108,773,227 - 8,773,346RGD
Celera107,667,598 - 7,667,717UniSTS
RH 3.4 Map10101.33RGD
RH 3.4 Map10101.33UniSTS
RH 2.0 Map100.0RGD
Cytogenetic Map10q12UniSTS
AU048802  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2108,242,280 - 8,242,411 (+)MAPPERmRatBN7.2
Rnor_6.0108,401,957 - 8,402,087NCBIRnor6.0
Rnor_5.0107,199,255 - 7,199,385UniSTSRnor5.0
RGSC_v3.4108,306,033 - 8,306,163UniSTSRGSC3.4
Cytogenetic Map10q12UniSTS
AW526208  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2108,191,057 - 8,191,282 (+)MAPPERmRatBN7.2
Rnor_6.0108,351,813 - 8,352,037NCBIRnor6.0
Rnor_5.0107,148,248 - 7,148,472UniSTSRnor5.0
RGSC_v3.4108,252,326 - 8,252,550UniSTSRGSC3.4
Celera107,171,784 - 7,172,008UniSTS
Cytogenetic Map10q12UniSTS
BE107936  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2108,306,502 - 8,306,663 (+)MAPPERmRatBN7.2
Rnor_6.0108,466,129 - 8,466,289NCBIRnor6.0
Rnor_5.0107,263,427 - 7,263,587UniSTSRnor5.0
RGSC_v3.4108,371,358 - 8,371,518UniSTSRGSC3.4
Celera107,286,617 - 7,286,777UniSTS
RH 3.4 Map10102.03UniSTS
Cytogenetic Map10q12UniSTS
BE121046  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2108,257,051 - 8,257,217 (+)MAPPERmRatBN7.2
Rnor_6.0108,417,019 - 8,417,184NCBIRnor6.0
Rnor_5.0107,214,317 - 7,214,482UniSTSRnor5.0
RGSC_v3.4108,320,807 - 8,320,972UniSTSRGSC3.4
Celera107,237,217 - 7,237,382UniSTS
RH 3.4 Map10129.14UniSTS
Cytogenetic Map10q12UniSTS
AU048140  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2108,424,916 - 8,425,043 (+)MAPPERmRatBN7.2
Rnor_6.0108,584,369 - 8,584,495NCBIRnor6.0
Rnor_5.0107,380,443 - 7,380,569UniSTSRnor5.0
RGSC_v3.4108,492,735 - 8,492,861UniSTSRGSC3.4
Celera107,404,950 - 7,405,076UniSTS
Cytogenetic Map10q12UniSTS
AU047645  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4108,340,611 - 8,341,155UniSTSRGSC3.4
Celera107,257,009 - 7,257,223UniSTS
Cytogenetic Map10q12UniSTS
AU047312  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2108,247,939 - 8,248,046 (+)MAPPERmRatBN7.2
Rnor_6.0108,407,618 - 8,407,724NCBIRnor6.0
Rnor_5.0107,204,916 - 7,205,022UniSTSRnor5.0
RGSC_v3.4108,311,694 - 8,311,800UniSTSRGSC3.4
Cytogenetic Map10q12UniSTS
RH138661  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2108,154,747 - 8,154,943 (+)MAPPERmRatBN7.2
Rnor_6.0108,315,511 - 8,315,706NCBIRnor6.0
Rnor_5.0107,111,946 - 7,112,141UniSTSRnor5.0
RGSC_v3.4108,216,024 - 8,216,219UniSTSRGSC3.4
Celera107,135,489 - 7,135,684UniSTS
Cytogenetic Map10q12UniSTS
RH139599  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2108,199,868 - 8,200,052 (+)MAPPERmRatBN7.2
Rnor_6.0108,360,619 - 8,360,802NCBIRnor6.0
Rnor_5.0107,157,054 - 7,157,237UniSTSRnor5.0
RGSC_v3.4108,261,132 - 8,261,315UniSTSRGSC3.4
Celera107,180,580 - 7,180,763UniSTS
Cytogenetic Map10q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 15 8 11 64 8
Low 2 14 19 10 2 10 10 14 32 9
Below cutoff 1 14 24 17 15 17 15 8 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066534   ⟹   ENSRNOP00000059781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl108,152,198 - 8,492,773 (-)Ensembl
Rnor_6.0 Ensembl108,312,961 - 8,654,892 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082332   ⟹   ENSRNOP00000070788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl108,156,064 - 8,492,773 (-)Ensembl
Rnor_6.0 Ensembl108,315,154 - 8,498,422 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098537   ⟹   ENSRNOP00000082950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl108,152,198 - 8,492,773 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100843   ⟹   ENSRNOP00000077105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl108,152,198 - 9,686,659 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108330   ⟹   ENSRNOP00000078589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl108,152,198 - 8,364,442 (-)Ensembl
RefSeq Acc Id: NM_001106974   ⟹   NP_001100444
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 8,999,391 (-)NCBI
mRatBN7.2108,152,198 - 8,492,773 (-)NCBI
Rnor_6.0108,312,961 - 8,654,892 (-)NCBI
Rnor_5.0107,109,396 - 7,482,255 (-)NCBI
RGSC_v3.4108,213,474 - 8,561,580 (-)RGD
Celera107,132,939 - 7,472,569 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245774   ⟹   XP_006245836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,001,811 (-)NCBI
mRatBN7.2108,152,198 - 8,495,247 (-)NCBI
Rnor_6.0108,312,961 - 8,657,668 (-)NCBI
Rnor_5.0107,109,396 - 7,482,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597204   ⟹   XP_017452693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 10,754,648 (-)NCBI
mRatBN7.2108,156,009 - 10,248,089 (-)NCBI
Rnor_6.0108,316,784 - 10,437,777 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597207   ⟹   XP_017452696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 10,754,648 (-)NCBI
mRatBN7.2108,152,198 - 10,248,078 (-)NCBI
Rnor_6.0108,312,961 - 10,437,774 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597209   ⟹   XP_017452698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 10,754,648 (-)NCBI
mRatBN7.2108,152,198 - 10,248,078 (-)NCBI
Rnor_6.0108,312,961 - 10,437,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597211   ⟹   XP_017452700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 9,001,811 (-)NCBI
mRatBN7.2108,156,027 - 8,495,247 (-)NCBI
Rnor_6.0108,316,785 - 8,657,670 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039085809   ⟹   XP_038941737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,518 - 10,754,648 (-)NCBI
mRatBN7.2108,156,012 - 10,248,087 (-)NCBI
RefSeq Acc Id: XM_039085817   ⟹   XP_038941745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 10,754,648 (-)NCBI
mRatBN7.2108,152,198 - 10,248,078 (-)NCBI
RefSeq Acc Id: XM_039085822   ⟹   XP_038941750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 9,031,413 (-)NCBI
mRatBN7.2108,156,022 - 8,524,782 (-)NCBI
RefSeq Acc Id: XM_039085829   ⟹   XP_038941757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 9,031,419 (-)NCBI
mRatBN7.2108,156,010 - 8,524,787 (-)NCBI
RefSeq Acc Id: XM_039085830   ⟹   XP_038941758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,518 - 9,001,811 (-)NCBI
mRatBN7.2108,156,021 - 8,495,247 (-)NCBI
RefSeq Acc Id: XM_039085833   ⟹   XP_038941761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 9,031,412 (-)NCBI
mRatBN7.2108,156,059 - 8,524,782 (-)NCBI
RefSeq Acc Id: XM_039085834   ⟹   XP_038941762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,001,811 (-)NCBI
mRatBN7.2108,152,198 - 8,495,247 (-)NCBI
RefSeq Acc Id: XM_063268858   ⟹   XP_063124928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,518 - 9,721,480 (-)NCBI
RefSeq Acc Id: XM_063268859   ⟹   XP_063124929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 9,721,480 (-)NCBI
RefSeq Acc Id: XM_063268860   ⟹   XP_063124930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,518 - 9,031,412 (-)NCBI
RefSeq Acc Id: XM_063268861   ⟹   XP_063124931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,721,480 (-)NCBI
RefSeq Acc Id: XM_063268862   ⟹   XP_063124932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,518 - 8,845,391 (-)NCBI
RefSeq Acc Id: XM_063268863   ⟹   XP_063124933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 8,845,391 (-)NCBI
RefSeq Acc Id: XM_063268864   ⟹   XP_063124934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,518 - 8,872,038 (-)NCBI
RefSeq Acc Id: XM_063268865   ⟹   XP_063124935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,518 - 10,193,182 (-)NCBI
RefSeq Acc Id: XM_063268866   ⟹   XP_063124936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,518 - 9,718,650 (-)NCBI
RefSeq Acc Id: XM_063268867   ⟹   XP_063124937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,518 - 9,718,771 (-)NCBI
RefSeq Acc Id: XM_063268868   ⟹   XP_063124938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,011 - 9,718,752 (-)NCBI
RefSeq Acc Id: XM_063268869   ⟹   XP_063124939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,031,407 (-)NCBI
RefSeq Acc Id: XM_063268870   ⟹   XP_063124940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,518 - 9,232,471 (-)NCBI
RefSeq Acc Id: XM_063268871   ⟹   XP_063124941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 9,232,499 (-)NCBI
RefSeq Acc Id: XM_063268872   ⟹   XP_063124942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,721,480 (-)NCBI
RefSeq Acc Id: XM_063268873   ⟹   XP_063124943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,031,407 (-)NCBI
RefSeq Acc Id: XM_063268874   ⟹   XP_063124944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,718,674 (-)NCBI
RefSeq Acc Id: XM_063268875   ⟹   XP_063124945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,001,811 (-)NCBI
RefSeq Acc Id: XM_063268876   ⟹   XP_063124946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,001,811 (-)NCBI
RefSeq Acc Id: XM_063268877   ⟹   XP_063124947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,031,413 (-)NCBI
RefSeq Acc Id: XM_063268878   ⟹   XP_063124948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 8,845,429 (-)NCBI
RefSeq Acc Id: XM_063268879   ⟹   XP_063124949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 8,845,416 (-)NCBI
RefSeq Acc Id: XM_063268880   ⟹   XP_063124950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,001,811 (-)NCBI
RefSeq Acc Id: XM_063268881   ⟹   XP_063124951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,031,411 (-)NCBI
RefSeq Acc Id: XM_063268882   ⟹   XP_063124952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,001,811 (-)NCBI
RefSeq Acc Id: XM_063268883   ⟹   XP_063124953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 9,718,649 (-)NCBI
RefSeq Acc Id: XM_063268884   ⟹   XP_063124954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,718,680 (-)NCBI
RefSeq Acc Id: XM_063268885   ⟹   XP_063124955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,232,499 (-)NCBI
RefSeq Acc Id: XM_063268886   ⟹   XP_063124956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,031,414 (-)NCBI
RefSeq Acc Id: XM_063268887   ⟹   XP_063124957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,718,650 (-)NCBI
RefSeq Acc Id: XM_063268888   ⟹   XP_063124958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 8,845,391 (-)NCBI
RefSeq Acc Id: XM_063268889   ⟹   XP_063124959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 8,845,391 (-)NCBI
RefSeq Acc Id: XM_063268890   ⟹   XP_063124960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,001,811 (-)NCBI
RefSeq Acc Id: XM_063268891   ⟹   XP_063124961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,661,350 - 8,845,391 (-)NCBI
RefSeq Acc Id: XM_063268892   ⟹   XP_063124962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,718,676 (-)NCBI
RefSeq Acc Id: XM_063268893   ⟹   XP_063124963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 9,232,471 (-)NCBI
RefSeq Acc Id: XM_063268894   ⟹   XP_063124964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8108,658,809 - 8,845,391 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100444 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245836 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452693 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452696 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452698 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452700 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941737 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941745 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941750 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941757 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941758 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941761 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941762 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124928 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124929 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124930 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124931 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124932 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124933 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124934 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124935 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124936 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124937 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124938 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124939 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124940 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124941 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124942 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124943 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124944 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124945 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124946 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124947 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124948 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124949 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124950 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124951 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124952 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124953 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124954 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124955 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124956 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124957 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124958 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124959 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124960 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124961 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124962 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124963 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124964 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL96249 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059781.2
  ENSRNOP00000070788
  ENSRNOP00000070788.2
  ENSRNOP00000077105.1
  ENSRNOP00000078589
  ENSRNOP00000078589.1
  ENSRNOP00000082950.1
Reference Protein Sequences
RefSeq Acc Id: NP_001100444   ⟸   NM_001106974
- UniProtKB: A0A8I5ZK82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245836   ⟸   XM_006245774
- Peptide Label: isoform X21
- UniProtKB: A0A8I5ZK82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452698   ⟸   XM_017597209
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017452696   ⟸   XM_017597207
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017452693   ⟸   XM_017597204
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017452700   ⟸   XM_017597211
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZW73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070788   ⟸   ENSRNOT00000082332
RefSeq Acc Id: ENSRNOP00000059781   ⟸   ENSRNOT00000066534
RefSeq Acc Id: XP_038941745   ⟸   XM_039085817
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038941762   ⟸   XM_039085834
- Peptide Label: isoform X31
- UniProtKB: A0A8I5ZK82 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941757   ⟸   XM_039085829
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZW73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941737   ⟸   XM_039085809
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038941758   ⟸   XM_039085830
- Peptide Label: isoform X22
- UniProtKB: A0A8I5ZW73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941750   ⟸   XM_039085822
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZW73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941761   ⟸   XM_039085833
- Peptide Label: isoform X24
- UniProtKB: A0A0G2JYU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000077105   ⟸   ENSRNOT00000100843
RefSeq Acc Id: ENSRNOP00000082950   ⟸   ENSRNOT00000098537
RefSeq Acc Id: ENSRNOP00000078589   ⟸   ENSRNOT00000108330
RefSeq Acc Id: XP_063124931   ⟸   XM_063268861
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063124942   ⟸   XM_063268872
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063124954   ⟸   XM_063268884
- Peptide Label: isoform X37
RefSeq Acc Id: XP_063124962   ⟸   XM_063268892
- Peptide Label: isoform X45
RefSeq Acc Id: XP_063124944   ⟸   XM_063268874
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063124957   ⟸   XM_063268887
- Peptide Label: isoform X40
RefSeq Acc Id: XP_063124955   ⟸   XM_063268885
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063124963   ⟸   XM_063268893
- Peptide Label: isoform X46
RefSeq Acc Id: XP_063124956   ⟸   XM_063268886
- Peptide Label: isoform X39
RefSeq Acc Id: XP_063124947   ⟸   XM_063268877
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063124951   ⟸   XM_063268881
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063124939   ⟸   XM_063268869
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063124943   ⟸   XM_063268873
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063124952   ⟸   XM_063268882
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063124960   ⟸   XM_063268890
- Peptide Label: isoform X43
RefSeq Acc Id: XP_063124950   ⟸   XM_063268880
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063124945   ⟸   XM_063268875
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063124946   ⟸   XM_063268876
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063124948   ⟸   XM_063268878
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063124964   ⟸   XM_063268894
- Peptide Label: isoform X47
RefSeq Acc Id: XP_063124959   ⟸   XM_063268889
- Peptide Label: isoform X42
RefSeq Acc Id: XP_063124958   ⟸   XM_063268888
- Peptide Label: isoform X41
RefSeq Acc Id: XP_063124938   ⟸   XM_063268868
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063124929   ⟸   XM_063268859
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063124953   ⟸   XM_063268883
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063124941   ⟸   XM_063268871
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063124949   ⟸   XM_063268879
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063124961   ⟸   XM_063268891
- Peptide Label: isoform X44
RefSeq Acc Id: XP_063124933   ⟸   XM_063268863
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063124935   ⟸   XM_063268865
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063124928   ⟸   XM_063268858
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063124937   ⟸   XM_063268867
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063124936   ⟸   XM_063268866
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063124940   ⟸   XM_063268870
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063124930   ⟸   XM_063268860
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063124934   ⟸   XM_063268864
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063124932   ⟸   XM_063268862
- Peptide Label: isoform X12
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSL1-F1-model_v2 AlphaFold D3ZSL1 1-416 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696956
Promoter ID:EPDNEW_R7481
Type:initiation region
Name:Rbfox1_1
Description:RNA binding fox-1 homolog 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0108,654,828 - 8,654,888EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311210 AgrOrtholog
BioCyc Gene G2FUF-26074 BioCyc
Ensembl Genes ENSRNOG00000002827 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066534.3 UniProtKB/TrEMBL
  ENSRNOT00000082332.2 UniProtKB/TrEMBL
  ENSRNOT00000098537.1 UniProtKB/TrEMBL
  ENSRNOT00000100843.1 UniProtKB/TrEMBL
  ENSRNOT00000108330 ENTREZGENE
  ENSRNOT00000108330.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Fox-1_C_dom UniProtKB/TrEMBL
  FOX1_RRM UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBFOX1-like UniProtKB/TrEMBL
  RNA-bd_9/Ataxin-2-bd UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
NCBI Gene 302920 ENTREZGENE
PANTHER ATAXIN 2-BINDING PROTEIN 1-RELATED UniProtKB/TrEMBL
  RNA BINDING PROTEIN FOX-1 HOMOLOG 1 UniProtKB/TrEMBL
  RNA BINDING PROTEIN FOX-1 HOMOLOG 1 UniProtKB/TrEMBL
Pfam Fox-1_C UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PhenoGen Rbfox1 PhenoGen
PIRSF Ataxin_2_bd_A2BP UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002827 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0G2JYU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZK82 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZL88_RAT UniProtKB/TrEMBL
  A0A8I5ZW73 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSL1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-28 Rbfox1  RNA binding fox-1 homolog 1  Rbfox1  RNA binding protein, fox-1 homolog 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-27 Rbfox1  RNA binding protein, fox-1 homolog 1  Rbfox1  RNA binding protein, fox-1 homolog (C. elegans) 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-28 Rbfox1  RNA binding protein, fox-1 homolog (C. elegans) 1  A2bp1  ataxin 2 binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-12-12 A2bp1  ataxin 2 binding protein 1  Boll_predicted  bol, boule-like (Drosophila) (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-01-12 Boll_predicted  bol, boule-like (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED