Itga9 (integrin subunit alpha 9) - Rat Genome Database

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Gene: Itga9 (integrin subunit alpha 9) Rattus norvegicus
Analyze
Symbol: Itga9
Name: integrin subunit alpha 9
RGD ID: 1311191
Description: Enables collagen binding activity and laminin binding activity. Predicted to be involved in several processes, including cell-matrix adhesion; integrin-mediated signaling pathway; and negative regulation of vasoconstriction. Predicted to act upstream of or within cell adhesion and neutrophil chemotaxis. Part of integrin alpha9-beta1 complex. Human ortholog(s) of this gene implicated in cerebral infarction; hypertension; and pancreatic cancer. Orthologous to human ITGA9 (integrin subunit alpha 9); PARTICIPATES IN altered integrin mediated signaling pathway; integrin mediated signaling pathway; pancreatic cancer pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: integrin alpha 9; integrin alpha 9-like; integrin alpha-9; integrin, alpha 9; Itga9l; LOC316055; LOC685004; similar to integrin alpha 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Itga9em1Mcwi
Genetic Models: SS-Itga9em1Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88127,185,244 - 127,493,296 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8127,169,226 - 127,493,296 (+)EnsemblGRCr8
mRatBN7.28118,307,424 - 118,615,527 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8118,307,381 - 118,613,754 (+)EnsemblmRatBN7.2
Rnor_6.08127,271,029 - 127,576,709 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8127,271,289 - 127,572,988 (+)Ensemblrn6Rnor6.0
Rnor_5.08126,493,359 - 126,795,566 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48123,526,904 - 123,838,241 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8117,492,541 - 117,791,124 (+)NCBICelera
RGSC_v3.18123,387,039 - 123,857,990 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Genetic and epigenetic analysis of non-small cell lung cancer with NotI-microarrays. Dmitriev AA, etal., Epigenetics. 2012 May;7(5):502-13. doi: 10.4161/epi.19801. Epub 2012 May 1.
2. Purification and characterization of integrin alpha 9 beta 1. Forsberg E, etal., Exp Cell Res. 1994 Jul;213(1):183-90.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Localization of integrin beta 1, alpha 1, alpha 5 and alpha 9 subunits in the rat testis. Giebel J, etal., Int J Androl. 1997 Feb;20(1):3-9.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Integrins: bidirectional, allosteric signaling machines. Hynes RO Cell 2002 Sep 20;110(6):673-87.
7. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Jones S, etal., Science. 2008 Sep 26;321(5897):1801-6. Epub 2008 Sep 4.
8. [Association of ITGA9 gene rs189897 and rs2212020 genotypes and its haplotype with cerebral infarction]. Li XM, etal., Nan Fang Yi Ke Da Xue Xue Bao. 2011 Jun;31(7):1142-5.
9. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. The integrins. Takada Y, etal., Genome Biol. 2007;8(5):215.
14. Blood pressure and hypertension are associated with 7 loci in the Japanese population. Takeuchi F, etal., Circulation. 2010 Jun 1;121(21):2302-9. doi: 10.1161/CIRCULATIONAHA.109.904664. Epub 2010 May 17.
15. Expression of tenascin-C and the integrin alpha 9 subunit in regeneration of rat nasal mucosa after chemical injury: involvement in migration and proliferation of epithelial cells. Yoshimura E, etal., Histochem Cell Biol. 1999 Apr;111(4):259-64.
Additional References at PubMed
PMID:7534781   PMID:8889548   PMID:12947022   PMID:18778724   PMID:21060781   PMID:21321126   PMID:27031437  


Genomics

Comparative Map Data
Itga9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88127,185,244 - 127,493,296 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8127,169,226 - 127,493,296 (+)EnsemblGRCr8
mRatBN7.28118,307,424 - 118,615,527 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8118,307,381 - 118,613,754 (+)EnsemblmRatBN7.2
Rnor_6.08127,271,029 - 127,576,709 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8127,271,289 - 127,572,988 (+)Ensemblrn6Rnor6.0
Rnor_5.08126,493,359 - 126,795,566 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48123,526,904 - 123,838,241 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8117,492,541 - 117,791,124 (+)NCBICelera
RGSC_v3.18123,387,039 - 123,857,990 (+)NCBI
Cytogenetic Map8q32NCBI
ITGA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38337,452,141 - 37,823,507 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl337,452,090 - 37,823,507 (+)Ensemblhg38GRCh38
GRCh37337,493,632 - 37,864,998 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36337,468,817 - 37,836,285 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34337,468,816 - 37,836,285NCBI
Celera337,427,381 - 37,795,659 (+)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef337,453,524 - 37,803,820 (+)NCBIHuRef
CHM1_1337,445,418 - 37,812,994 (+)NCBICHM1_1
T2T-CHM13v2.0337,453,682 - 37,827,665 (+)NCBIT2T-CHM13v2.0
Itga9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399118,435,777 - 118,730,071 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9118,435,758 - 118,730,071 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389118,606,709 - 118,901,003 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9118,606,690 - 118,901,003 (+)Ensemblmm10GRCm38
MGSCv379118,515,827 - 118,810,121 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369118,455,407 - 118,747,637 (+)NCBIMGSCv36mm8
Celera9119,076,746 - 119,369,133 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map970.32NCBI
Itga9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554214,331,048 - 4,663,092 (+)Ensembl
ChiLan1.0NW_0049554214,331,053 - 4,663,101 (+)NCBIChiLan1.0ChiLan1.0
ITGA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2237,404,594 - 37,773,882 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1337,409,358 - 37,778,646 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0337,349,120 - 37,722,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1337,635,563 - 38,006,363 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl337,651,395 - 38,006,363 (+)EnsemblpanPan2panpan1.1
CTDSPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1237,616,264 - 7,760,595 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl237,725,446 - 7,758,067 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha237,687,460 - 7,802,513 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0237,934,233 - 8,049,568 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1237,748,828 - 7,863,990 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0237,889,843 - 8,005,071 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0237,882,182 - 7,997,474 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Itga9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118193,736,764 - 194,050,174 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647326,876,671 - 27,184,795 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647326,875,337 - 27,188,747 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1322,268,503 - 22,655,704 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11322,298,497 - 22,655,717 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21324,631,116 - 24,724,457 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITGA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1151,585,811 - 1,961,798 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl151,581,676 - 1,961,435 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606310,313,062 - 10,698,298 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itga9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477320,341,335 - 20,735,189 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477320,336,975 - 20,735,081 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Itga9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18109,840,660 - 110,134,106 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:38
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000015113
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat

Markers in Region
D2Mgh4  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88127,255,460 - 127,255,626 (+)Marker Load Pipeline
mRatBN7.28118,377,781 - 118,377,831 (+)MAPPERmRatBN7.2
mRatBN7.28118,377,666 - 118,377,831 (+)MAPPERmRatBN7.2
mRatBN7.28118,377,666 - 118,378,107 (+)MAPPERmRatBN7.2
Rnor_6.08127,341,429 - 127,341,593NCBIRnor6.0
Rnor_6.08127,341,429 - 127,341,919NCBIRnor6.0
Rnor_5.08126,561,786 - 126,562,276UniSTSRnor5.0
Rnor_5.08126,561,786 - 126,561,950UniSTSRnor5.0
RGSC_v3.48123,595,751 - 123,595,915UniSTSRGSC3.4
Celera8117,561,112 - 117,561,259UniSTS
RGSC_v3.18123,615,487 - 123,615,652RGD
FHH x ACI Map230.8999RGD
FHH x ACI Map230.8999UniSTS
Cytogenetic Map8q32UniSTS
D8Got193  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,302,732 - 118,302,888 (+)MAPPERmRatBN7.2
Rnor_6.08127,266,322 - 127,266,477NCBIRnor6.0
Rnor_5.08126,488,628 - 126,488,783UniSTSRnor5.0
RGSC_v3.48123,521,936 - 123,522,092RGDRGSC3.4
RGSC_v3.48123,521,937 - 123,522,092UniSTSRGSC3.4
Celera8117,487,834 - 117,487,989UniSTS
RGSC_v3.18123,541,674 - 123,541,829RGD
RH 3.4 Map81292.2UniSTS
RH 3.4 Map81292.2RGD
RH 2.0 Map81003.0RGD
Cytogenetic Map8q32UniSTS
D8Got195  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,324,174 - 118,324,442 (+)MAPPERmRatBN7.2
Rnor_6.08127,287,773 - 127,288,040NCBIRnor6.0
Rnor_5.08126,510,079 - 126,510,346UniSTSRnor5.0
RGSC_v3.48123,543,384 - 123,543,652RGDRGSC3.4
RGSC_v3.48123,543,385 - 123,543,652UniSTSRGSC3.4
Celera8117,509,265 - 117,509,540UniSTS
RGSC_v3.18123,563,122 - 123,563,389RGD
RH 3.4 Map81312.8UniSTS
RH 3.4 Map81312.8RGD
RH 2.0 Map81029.9RGD
Cytogenetic Map8q32UniSTS
D8Got167  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,324,105 - 118,324,310 (+)MAPPERmRatBN7.2
Rnor_6.08127,287,704 - 127,287,908NCBIRnor6.0
Rnor_5.08126,510,010 - 126,510,214UniSTSRnor5.0
RGSC_v3.48123,543,315 - 123,543,520RGDRGSC3.4
RGSC_v3.48123,543,316 - 123,543,520UniSTSRGSC3.4
Celera8117,509,196 - 117,509,408UniSTS
RGSC_v3.18123,563,053 - 123,563,257RGD
RH 3.4 Map81303.4RGD
RH 3.4 Map81303.4UniSTS
Cytogenetic Map8q32UniSTS
AU047111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,322,812 - 118,322,984 (+)MAPPERmRatBN7.2
Rnor_6.08127,286,411 - 127,286,582NCBIRnor6.0
Rnor_5.08126,508,717 - 126,508,888UniSTSRnor5.0
RGSC_v3.48123,542,023 - 123,542,194UniSTSRGSC3.4
Celera8117,507,903 - 117,508,074UniSTS
Cytogenetic Map8q32UniSTS
D9Ertd428e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,611,924 - 118,612,144 (+)MAPPERmRatBN7.2
Rnor_6.08127,573,108 - 127,573,327NCBIRnor6.0
Rnor_5.08126,791,965 - 126,792,184UniSTSRnor5.0
RGSC_v3.48123,837,966 - 123,838,185UniSTSRGSC3.4
Celera8117,787,521 - 117,787,740UniSTS
Cytogenetic Map8q32UniSTS
RH132998  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88127,189,659 - 127,189,859 (+)Marker Load Pipeline
mRatBN7.28118,311,842 - 118,312,042 (+)MAPPERmRatBN7.2
Rnor_6.08127,275,432 - 127,275,631NCBIRnor6.0
Rnor_5.08126,497,738 - 126,497,937UniSTSRnor5.0
RGSC_v3.48123,531,047 - 123,531,246UniSTSRGSC3.4
Celera8117,496,946 - 117,497,145UniSTS
RH 3.4 Map81292.1UniSTS
Cytogenetic Map8q32UniSTS
RH144307  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,308,441 - 118,308,596 (+)MAPPERmRatBN7.2
Rnor_6.08127,272,031 - 127,272,185NCBIRnor6.0
Rnor_5.08126,494,337 - 126,494,491UniSTSRnor5.0
RGSC_v3.48123,527,646 - 123,527,800UniSTSRGSC3.4
Celera8117,493,543 - 117,493,697UniSTS
RH 3.4 Map81302.6UniSTS
Cytogenetic Map8q32UniSTS
BE102516  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,583,600 - 118,583,778 (+)MAPPERmRatBN7.2
Rnor_6.08127,544,784 - 127,544,961NCBIRnor6.0
Rnor_5.08126,763,641 - 126,763,818UniSTSRnor5.0
RGSC_v3.48123,809,643 - 123,809,820UniSTSRGSC3.4
Celera8117,759,198 - 117,759,375UniSTS
RH 3.4 Map81302.1UniSTS
Cytogenetic Map8q32UniSTS
AU048253  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,348,837 - 118,348,960 (+)MAPPERmRatBN7.2
Rnor_6.08127,312,516 - 127,312,638NCBIRnor6.0
Rnor_5.08126,533,351 - 126,533,473UniSTSRnor5.0
RGSC_v3.48123,566,695 - 123,566,817UniSTSRGSC3.4
Celera8117,532,112 - 117,532,234UniSTS
Cytogenetic Map8q32UniSTS
AU049476  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,506,481 - 118,506,771 (+)MAPPERmRatBN7.2
Rnor_6.08127,471,197 - 127,471,486NCBIRnor6.0
Rnor_5.08126,690,240 - 126,690,529UniSTSRnor5.0
RGSC_v3.48123,733,215 - 123,733,504UniSTSRGSC3.4
Celera8117,688,799 - 117,689,088UniSTS
Cytogenetic Map8q32UniSTS


Genetic Models
This gene Itga9 is modified in the following models/strains:
SS-Itga9em1Mcwi    


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000015113   ⟹   ENSRNOP00000015113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8127,185,068 - 127,493,296 (+)Ensembl
mRatBN7.2 Ensembl8118,307,381 - 118,613,754 (+)Ensembl
Rnor_6.0 Ensembl8127,271,289 - 127,572,988 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095055   ⟹   ENSRNOP00000094362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8127,189,957 - 127,493,296 (+)Ensembl
mRatBN7.2 Ensembl8118,312,114 - 118,613,754 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000139641   ⟹   ENSRNOP00000103989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8127,169,226 - 127,493,296 (+)Ensembl
RefSeq Acc Id: NM_001420002   ⟹   NP_001406931
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,185,289 - 127,493,296 (+)NCBI
mRatBN7.28118,307,472 - 118,615,527 (+)NCBI
RefSeq Acc Id: XM_039082700   ⟹   XP_038938628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,187,889 - 127,493,296 (+)NCBI
mRatBN7.28118,309,952 - 118,611,805 (+)NCBI
RefSeq Acc Id: XM_039082701   ⟹   XP_038938629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,189,966 - 127,493,296 (+)NCBI
mRatBN7.28118,312,152 - 118,611,805 (+)NCBI
RefSeq Acc Id: XM_039082703   ⟹   XP_038938631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,261,369 - 127,493,296 (+)NCBI
mRatBN7.28118,385,074 - 118,611,952 (+)NCBI
RefSeq Acc Id: XM_063266145   ⟹   XP_063122215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,185,244 - 127,284,410 (+)NCBI
Ensembl Acc Id: ENSRNOP00000015113   ⟸   ENSRNOT00000015113
RefSeq Acc Id: XP_038938628   ⟸   XM_039082700
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GL49 (UniProtKB/TrEMBL),   A6I3U4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938629   ⟸   XM_039082701
- Peptide Label: isoform X2
- UniProtKB: A6I3U4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938631   ⟸   XM_039082703
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000094362   ⟸   ENSRNOT00000095055
RefSeq Acc Id: NP_001406931   ⟸   NM_001420002
- Peptide Label: precursor
- UniProtKB: D3ZN51 (UniProtKB/TrEMBL),   A6I3U4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122215   ⟸   XM_063266145
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000103989   ⟸   ENSRNOT00000139641
Protein Domains
Integrin alpha first immunoglubulin-like   Integrin alpha second immunoglobulin-like   Integrin alpha third immunoglobulin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZN51-F1-model_v2 AlphaFold D3ZN51 1-1036 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696363
Promoter ID:EPDNEW_R6888
Type:single initiation site
Name:Itga9_1
Description:integrin subunit alpha 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08127,271,326 - 127,271,386EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311191 AgrOrtholog
BioCyc Gene G2FUF-28816 BioCyc
Ensembl Genes ENSRNOG00000043167 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015113 ENTREZGENE
  ENSRNOT00000015113.9 UniProtKB/TrEMBL
  ENSRNOT00000095055 ENTREZGENE
  ENSRNOT00000095055.2 UniProtKB/TrEMBL
  ENSRNOT00000139641 ENTREZGENE
  ENSRNOT00000139641.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.130 UniProtKB/TrEMBL
  Bicelle-embedded integrin alpha(iib) transmembrane segment UniProtKB/TrEMBL
  Integrin domains. Chain A, domain 2 UniProtKB/TrEMBL
  ntegrin, alpha v. Chain A, domain 3 UniProtKB/TrEMBL
  ntegrin, alpha v. Chain A, domain 4 UniProtKB/TrEMBL
InterPro FG-GAP UniProtKB/TrEMBL
  Int_alpha_beta-p UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/TrEMBL
  Integrin_alpha-2 UniProtKB/TrEMBL
  Integrin_alpha_C_CS UniProtKB/TrEMBL
  Integrin_alpha_Ig-like_2 UniProtKB/TrEMBL
  Integrin_alpha_Ig-like_3 UniProtKB/TrEMBL
  Integrin_alpha_N UniProtKB/TrEMBL
  Integrin_dom UniProtKB/TrEMBL
NCBI Gene Itga9 ENTREZGENE
PANTHER INTEGRIN ALPHA UniProtKB/TrEMBL
  INTEGRIN ALPHA-9 UniProtKB/TrEMBL
Pfam FG-GAP UniProtKB/TrEMBL
  Integrin_A_Ig_2 UniProtKB/TrEMBL
  Integrin_A_Ig_3 UniProtKB/TrEMBL
  Integrin_alpha2 UniProtKB/TrEMBL
PhenoGen Itga9 PhenoGen
PRINTS INTEGRINA UniProtKB/TrEMBL
PROSITE FG_GAP UniProtKB/TrEMBL
  INTEGRIN_ALPHA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000043167 RatGTEx
SMART Int_alpha UniProtKB/TrEMBL
Superfamily-SCOP SSF69179 UniProtKB/TrEMBL
  SSF69318 UniProtKB/TrEMBL
UniProt A0A8I6GL49 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LI03_RAT UniProtKB/TrEMBL
  A6I3U4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZN51 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-09-09 Itga9l  integrin alpha 9-like  Itga9  integrin alpha 9  Data merged from RGD:1583293 737654 APPROVED
2009-09-09 Itga9  integrin, alpha 9  Itga9l  integrin alpha 9-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-14 Itga9  integrin alpha 9  Itga9  integrin alpha 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-13 Itga9  integrin alpha 9  LOC685004  similar to integrin alpha 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-13 Itga9l  integrin alpha 9-like  Itga9  integrin alpha 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685004  similar to integrin alpha 9  LOC687154  similar to integrin alpha 9  Data merged from RGD:1588932 1643240 APPROVED
2006-11-19 LOC685004  similar to integrin alpha 9      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687154  similar to integrin alpha 9      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Itga9  integrin alpha 9  Itga9_predicted  integrin alpha 9 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Itga9_predicted  integrin alpha 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED