Dhx35 (DEAH-box helicase 35) - Rat Genome Database

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Gene: Dhx35 (DEAH-box helicase 35) Rattus norvegicus
Analyze
Symbol: Dhx35
Name: DEAH-box helicase 35
RGD ID: 1311165
Description: Predicted to enable RNA binding activity and helicase activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to act upstream of or within in utero embryonic development. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human DHX35 (DEAH-box helicase 35); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; acetamide; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DEAH (Asp-Glu-Ala-His) box polypeptide 35; LOC362260; probable ATP-dependent RNA helicase DHX35
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,869,971 - 167,927,300 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3167,870,055 - 167,927,300 (+)EnsemblGRCr8
mRatBN7.23147,450,178 - 147,507,473 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3147,450,163 - 147,507,451 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3151,281,674 - 151,338,955 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03159,781,030 - 159,838,312 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03157,516,896 - 157,573,663 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03155,297,545 - 155,354,857 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3155,297,566 - 155,356,462 (+)Ensemblrn6Rnor6.0
Rnor_5.03160,256,769 - 160,313,877 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43149,532,510 - 149,589,678 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3146,146,766 - 146,203,990 (+)NCBICelera
RGSC_v3.13149,438,418 - 149,495,588 (+)NCBI
Cytogenetic Map3q42NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11991638   PMID:27996060  


Genomics

Comparative Map Data
Dhx35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,869,971 - 167,927,300 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3167,870,055 - 167,927,300 (+)EnsemblGRCr8
mRatBN7.23147,450,178 - 147,507,473 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3147,450,163 - 147,507,451 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3151,281,674 - 151,338,955 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03159,781,030 - 159,838,312 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03157,516,896 - 157,573,663 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03155,297,545 - 155,354,857 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3155,297,566 - 155,356,462 (+)Ensemblrn6Rnor6.0
Rnor_5.03160,256,769 - 160,313,877 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43149,532,510 - 149,589,678 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3146,146,766 - 146,203,990 (+)NCBICelera
RGSC_v3.13149,438,418 - 149,495,588 (+)NCBI
Cytogenetic Map3q42NCBI
DHX35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382038,962,344 - 39,039,721 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2038,962,299 - 39,039,723 (+)Ensemblhg38GRCh38
GRCh372037,590,987 - 37,668,364 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362037,024,414 - 37,101,778 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342037,024,413 - 37,101,777NCBI
Celera2034,301,654 - 34,379,038 (+)NCBICelera
Cytogenetic Map20q11.23-q12NCBI
HuRef2034,328,340 - 34,405,729 (+)NCBIHuRef
CHM1_12037,495,224 - 37,572,605 (+)NCBICHM1_1
T2T-CHM13v2.02040,692,393 - 40,769,759 (+)NCBIT2T-CHM13v2.0
Dhx35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392158,636,674 - 158,700,141 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2158,636,727 - 158,700,134 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382158,794,745 - 158,858,220 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2158,794,807 - 158,858,214 (+)Ensemblmm10GRCm38
MGSCv372158,620,556 - 158,683,950 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362158,486,261 - 158,549,655 (+)NCBIMGSCv36mm8
Celera2164,728,399 - 164,793,209 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map278.74NCBI
Dhx35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544517,753,162 - 17,827,782 (-)Ensembl
ChiLan1.0NW_00495544517,753,975 - 17,827,748 (-)NCBIChiLan1.0ChiLan1.0
DHX35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22144,687,477 - 44,765,069 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12044,680,574 - 44,762,199 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02035,286,617 - 35,364,222 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12036,392,801 - 36,470,374 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2036,392,801 - 36,470,324 (+)EnsemblpanPan2panpan1.1
DHX35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12427,329,842 - 27,394,005 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2427,329,786 - 27,393,101 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2426,975,582 - 27,041,495 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02428,026,130 - 28,092,218 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2428,026,206 - 28,092,209 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12427,299,864 - 27,364,571 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02427,408,447 - 27,473,173 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02427,896,018 - 27,961,877 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dhx35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640176,228,327 - 176,299,560 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365612,449,662 - 2,521,151 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365612,449,924 - 2,521,145 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DHX35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1741,900,674 - 41,979,030 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11741,900,658 - 42,090,933 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21747,376,939 - 47,455,315 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DHX35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,710,517 - 24,790,687 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl224,709,054 - 24,789,520 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605073,540,306 - 73,619,752 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dhx35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624842664,031 - 748,166 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624842662,875 - 734,201 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dhx35
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15138,138,959 - 138,202,279 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dhx35
229 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:469
Count of miRNA genes:238
Interacting mature miRNAs:288
Transcripts:ENSRNOT00000021435
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3166376089177728348Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161799493176036425Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat

Markers in Region
BQ196041  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23147,464,254 - 147,464,420 (+)MAPPERmRatBN7.2
Rnor_6.03155,311,645 - 155,311,810NCBIRnor6.0
Rnor_5.03160,299,816 - 160,299,981UniSTSRnor5.0
RGSC_v3.43149,546,483 - 149,546,648UniSTSRGSC3.4
Celera3146,160,806 - 146,160,971UniSTS
RH 3.4 Map31357.7UniSTS
Cytogenetic Map3q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021435   ⟹   ENSRNOP00000021435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3167,870,058 - 167,927,300 (+)Ensembl
mRatBN7.2 Ensembl3147,450,163 - 147,507,451 (+)Ensembl
Rnor_6.0 Ensembl3155,297,566 - 155,354,841 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084866   ⟹   ENSRNOP00000068770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3167,870,055 - 167,927,299 (+)Ensembl
mRatBN7.2 Ensembl3147,450,163 - 147,507,451 (+)Ensembl
Rnor_6.0 Ensembl3155,297,619 - 155,356,462 (+)Ensembl
RefSeq Acc Id: NM_001108601   ⟹   NP_001102071
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,870,058 - 167,927,300 (+)NCBI
mRatBN7.23147,450,207 - 147,507,452 (+)NCBI
Rnor_6.03155,297,566 - 155,354,841 (+)NCBI
Rnor_5.03160,256,769 - 160,313,877 (-)NCBI
RGSC_v3.43149,532,510 - 149,589,678 (+)RGD
Celera3146,146,766 - 146,203,990 (+)RGD
Sequence:
RefSeq Acc Id: NM_001415857   ⟹   NP_001402786
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,870,058 - 167,927,300 (+)NCBI
mRatBN7.23147,450,207 - 147,507,452 (+)NCBI
RefSeq Acc Id: XM_017591930   ⟹   XP_017447419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,870,138 - 167,927,300 (+)NCBI
mRatBN7.23147,450,288 - 147,507,473 (+)NCBI
Rnor_6.03155,304,298 - 155,354,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105513   ⟹   XP_038961441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,869,971 - 167,905,253 (+)NCBI
mRatBN7.23147,450,230 - 147,485,963 (+)NCBI
RefSeq Acc Id: XM_063284188   ⟹   XP_063140258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,870,138 - 167,927,300 (+)NCBI
RefSeq Acc Id: XM_063284189   ⟹   XP_063140259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,870,062 - 167,927,300 (+)NCBI
RefSeq Acc Id: XR_005501942
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,869,971 - 167,912,450 (+)NCBI
mRatBN7.23147,450,230 - 147,492,602 (+)NCBI
RefSeq Acc Id: XR_352762
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,869,971 - 167,921,630 (+)NCBI
mRatBN7.23147,450,232 - 147,501,780 (+)NCBI
Rnor_6.03155,297,545 - 155,349,148 (+)NCBI
Rnor_5.03160,256,769 - 160,313,877 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001102071   ⟸   NM_001108601
- Peptide Label: isoform 2
- UniProtKB: D4AEG5 (UniProtKB/TrEMBL),   A6JWY0 (UniProtKB/TrEMBL),   A6JWY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447419   ⟸   XM_017591930
- Peptide Label: isoform X1
- UniProtKB: A6JWY1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068770   ⟸   ENSRNOT00000084866
Ensembl Acc Id: ENSRNOP00000021435   ⟸   ENSRNOT00000021435
RefSeq Acc Id: XP_038961441   ⟸   XM_039105513
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001402786   ⟸   NM_001415857
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JTM6 (UniProtKB/TrEMBL),   A6JWY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140259   ⟸   XM_063284189
- Peptide Label: isoform X1
- UniProtKB: A6JWY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140258   ⟸   XM_063284188
- Peptide Label: isoform X1
- UniProtKB: A6JWY1 (UniProtKB/TrEMBL)
Protein Domains
Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTM6-F1-model_v2 AlphaFold A0A0G2JTM6 1-703 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692627
Promoter ID:EPDNEW_R3150
Type:multiple initiation site
Name:Dhx35_1
Description:DEAH-box helicase 35
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03155,297,613 - 155,297,673EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311165 AgrOrtholog
BioCyc Gene G2FUF-47001 BioCyc
Ensembl Genes ENSRNOG00000015928 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021435 ENTREZGENE
  ENSRNOT00000021435.7 UniProtKB/TrEMBL
  ENSRNOT00000084866 ENTREZGENE
  ENSRNOT00000084866.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1080 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro DNA/RNA_helicase_DEAH_CS UniProtKB/TrEMBL
  DUF1605 UniProtKB/TrEMBL
  HA2_WH UniProtKB/TrEMBL
  Helicase-assoc_dom UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:362260 UniProtKB/TrEMBL
NCBI Gene 362260 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE UniProtKB/TrEMBL
  ATP-DEPENDENT RNA HELICASE DHX35-RELATED UniProtKB/TrEMBL
Pfam HA2 UniProtKB/TrEMBL
  HA2_C UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  OB_NTP_bind UniProtKB/TrEMBL
PhenoGen Dhx35 PhenoGen
PROSITE DEAH_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015928 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HA2 UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JTM6 ENTREZGENE, UniProtKB/TrEMBL
  A6JWY0 ENTREZGENE, UniProtKB/TrEMBL
  A6JWY1 ENTREZGENE, UniProtKB/TrEMBL
  D4AEG5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Dhx35  DEAH-box helicase 35  Dhx35  DEAH (Asp-Glu-Ala-His) box polypeptide 35  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Dhx35  DEAH (Asp-Glu-Ala-His) box polypeptide 35   Dhx35_predicted  DEAH (Asp-Glu-Ala-His) box polypeptide 35 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Dhx35_predicted  DEAH (Asp-Glu-Ala-His) box polypeptide 35 (predicted)      Symbol and Name status set to approved 70820 APPROVED