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Gene: Bcl11b (BCL11 transcription factor B) Rattus norvegicus

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Symbol:

Bcl11b

Name:

BCL11 transcription factor B

RGD ID:

1311128

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in hematopoietic stem cell migration; lymphoid lineage cell migration into thymus; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including T cell differentiation; epithelial cell development; and neuron differentiation. Predicted to be located in neuron projection. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in immunodeficiency 49. Orthologous to human BCL11B (BCL11 transcription factor B); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

B-cell CLL/lymphoma 11B; B-cell CLL/lymphoma 11B (zinc finger protein); B-cell leukemia/lymphoma 11B; B-cell lymphoma/leukemia 11B; BAF chromatin remodeling complex subunit BCL11B; BCL11B, BAF complex component; COUP-TF-interacting protein 2 long form; Ctip2; LOC314423

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BCL11B (BCL11 transcription factor B)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Bcl11b (B cell leukemia/lymphoma 11B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bcl11b (BCL11 transcription factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BCL11B (BCL11 transcription factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BCL11B (BCL11 transcription factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bcl11b (BCL11 transcription factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BCL11B (BCL11 transcription factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BCL11B (BCL11 transcription factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bcl11b (BCL11 transcription factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Bcl11b (BCL11 transcription factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	BCL11B (BCL11 transcription factor B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Bcl11b (B cell leukemia/lymphoma 11B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bcl11ba (BAF chromatin remodeling complex subunit BCL11B a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9650	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9650	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bcl-11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bcl-11	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	bcl11bb	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	bcl11b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	bcl11b	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	132,598,968 - 132,692,123 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	132,598,968 - 132,691,301 (-)	Ensembl				GRCr8
mRatBN7.2	6	126,834,531 - 126,927,720 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	126,834,531 - 126,928,224 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	126,958,692 - 127,050,867 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	127,253,714 - 127,345,900 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	126,612,161 - 126,704,296 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	131,834,097 - 131,927,251 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	131,834,097 - 131,926,272 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	141,004,477 - 141,097,643 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	132,292,671 - 132,384,572 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	124,393,881 - 124,486,186 (-)	NCBI		Celera
RGSC_v3.1	6	132,296,789 - 132,389,378 (-)	NCBI
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

combined immunodeficiency (ISO)

COVID-19 (ISO)

genetic disease (ISO)

immunodeficiency 49 (ISO)

INTELLECTUAL DEVELOPMENTAL DISORDER WITH SPEECH DELAY, DYSMORPHIC FACIES, AND T-CELL ABNORMALITIES (ISO)

lymphoma (ISO)

microcephaly (ISO)

T-cell acute lymphoblastic leukemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (EXP,ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

cocaine (ISO)

decabromodiphenyl ether (EXP)

dibutyl phthalate (EXP,ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenamidone (ISO)

fluoxetine (EXP)

folic acid (ISO)

genistein (ISO)

gentamycin (EXP)

glycidol (EXP)

hydroquinone (ISO)

iron dichloride (ISO)

megestrol acetate (EXP)

methapyrilene (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

morphine (ISO)

nicotine (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alpha-beta T cell differentiation (ISO)

axonogenesis (ISO)

central nervous system neuron differentiation (ISO)

commitment of neuronal cell to specific neuron type in forebrain (ISO)

DNA-templated transcription (IEA)

epithelial cell morphogenesis (ISO)

hematopoietic stem cell migration (IEA,ISO)

keratinocyte development (ISO)

lymphoid lineage cell migration into thymus (IEA,ISO)

negative regulation of apoptotic process (ISO)

negative regulation of cell population proliferation (ISO)

odontogenesis of dentin-containing tooth (ISO)

olfactory bulb axon guidance (ISO)

positive regulation of transcription by RNA polymerase II (IBA,ISO)

positive T cell selection (ISO)

post-embryonic camera-type eye development (ISO)

post-embryonic development (ISO)

regulation of gene expression (ISO)

regulation of keratinocyte proliferation (ISO)

regulation of lipid metabolic process (ISO)

regulation of neuron differentiation (ISO)

regulation of transcription by RNA polymerase II (IEA)

skin development (ISO)

striatal medium spiny neuron differentiation (ISO)

T cell differentiation (IEA)

T cell differentiation in thymus (ISO)

T cell receptor V(D)J recombination (ISO)

thymus development (ISO)

Cellular Component

neuron projection (IEA,ISO)

nucleus (IBA,IEA,ISO)

SWI/SNF complex (IEA,ISO)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

DNA-binding transcription factor activity (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

sequence-specific DNA binding (IEA,ISO)

sequence-specific double-stranded DNA binding (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12565905	PMID:12717433	PMID:15664173	PMID:16670294	PMID:16809611	PMID:17998389	PMID:18199763	PMID:18215621	PMID:18255031	PMID:18595722	PMID:19092943
PMID:19251658	PMID:21752992	PMID:22082260	PMID:23144223	PMID:24705758	PMID:25100583	PMID:26096706	PMID:27577752	PMID:27959403	PMID:27959755

Genomics

Comparative Map Data

Bcl11b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	132,598,968 - 132,692,123 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	132,598,968 - 132,691,301 (-)	Ensembl				GRCr8
mRatBN7.2	6	126,834,531 - 126,927,720 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	126,834,531 - 126,928,224 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	126,958,692 - 127,050,867 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	127,253,714 - 127,345,900 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	126,612,161 - 126,704,296 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	131,834,097 - 131,927,251 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	131,834,097 - 131,926,272 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	141,004,477 - 141,097,643 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	132,292,671 - 132,384,572 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	124,393,881 - 124,486,186 (-)	NCBI		Celera
RGSC_v3.1	6	132,296,789 - 132,389,378 (-)	NCBI
Cytogenetic Map	6	q32	NCBI

BCL11B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	99,169,287 - 99,272,197 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	99,169,287 - 99,272,197 (-)	Ensembl			hg38	GRCh38
GRCh37	14	99,635,624 - 99,738,534 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	98,705,377 - 98,807,575 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	98,705,376 - 98,807,575	NCBI
Celera	14	79,691,368 - 79,793,512 (-)	NCBI		Celera
Cytogenetic Map	14	q32.2	NCBI
HuRef	14	79,819,226 - 79,921,464 (-)	NCBI		HuRef
CHM1_1	14	99,573,389 - 99,675,578 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	93,400,844 - 93,503,767 (-)	NCBI		T2T-CHM13v2.0

Bcl11b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	107,876,662 - 107,970,404 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	107,876,662 - 107,969,861 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	107,910,403 - 108,004,145 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	107,910,403 - 108,003,602 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	109,148,613 - 109,241,624 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	108,363,030 - 108,451,028 (-)	NCBI		MGSCv36	mm8
Celera	12	109,151,974 - 109,245,238 (-)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	59.1	NCBI

Bcl11b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	20,564,449 - 20,637,103 (-)	Ensembl
ChiLan1.0	NW_004955438	20,562,345 - 20,637,662 (-)	NCBI	ChiLan1.0	ChiLan1.0

BCL11B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	100,325,797 - 100,429,008 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	99,542,293 - 99,645,444 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	79,795,262 - 79,898,472 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	99,122,231 - 99,205,962 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

BCL11B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	67,622,592 - 67,713,922 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	67,622,708 - 67,714,404 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	67,145,953 - 67,237,226 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	67,909,299 - 68,000,574 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	67,909,387 - 68,001,543 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	67,570,743 - 67,661,895 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	67,636,646 - 67,728,187 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	68,033,837 - 68,125,174 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Bcl11b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	6,972,307 - 7,063,288 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936604	3,023,844 - 3,110,083 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936604	3,023,781 - 3,110,104 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BCL11B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	120,205,008 - 120,295,936 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	120,205,008 - 120,295,737 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	127,759,537 - 127,855,267 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BCL11B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	77,122,591 - 77,222,562 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	77,122,689 - 77,221,454 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	64,224,342 - 64,347,710 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bcl11b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	4,560,699 - 4,647,858 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	4,560,362 - 4,649,219 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Bcl11b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	125,574,488 - 125,690,359 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Bcl11b
1151 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	392
Count of miRNA genes:	218
Interacting mature miRNAs:	256
Transcripts:	ENSRNOT00000007602
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	112483610	147156653	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	114241077	147156653	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	118366855	147156653	Rat
2312560	Pur20	Proteinuria QTL 20	2.1	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	131392689	143944780	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	122236101	147156653	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	121444670	147156653	Rat

Markers in Region

Bcl11b

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	126,837,358 - 126,837,583 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,836,925 - 131,837,149	NCBI	Rnor6.0
Rnor_5.0	6	141,007,305 - 141,007,529	UniSTS	Rnor5.0
RGSC_v3.4	6	132,294,397 - 132,294,621	UniSTS	RGSC3.4
Celera	6	124,396,709 - 124,396,933	UniSTS
Cytogenetic Map	6	q32	UniSTS

stSG632080

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	126,835,779 - 126,837,168 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,835,346 - 131,836,734	NCBI	Rnor6.0
Rnor_5.0	6	141,005,726 - 141,007,114	UniSTS	Rnor5.0
RGSC_v3.4	6	132,292,818 - 132,294,206	UniSTS	RGSC3.4
Celera	6	124,395,130 - 124,396,518	UniSTS
Cytogenetic Map	6	q32	UniSTS

stSG632129

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	126,888,831 - 126,889,797 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,888,435 - 131,889,400	NCBI	Rnor6.0
Rnor_5.0	6	141,058,815 - 141,059,780	UniSTS	Rnor5.0
RGSC_v3.4	6	132,345,869 - 132,346,834	UniSTS	RGSC3.4
Celera	6	124,448,318 - 124,449,283	UniSTS
Cytogenetic Map	6	q32	UniSTS

ECD17061

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	126,838,523 - 126,838,935 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,838,090 - 131,838,501	NCBI	Rnor6.0
Rnor_5.0	6	141,008,470 - 141,008,881	UniSTS	Rnor5.0
RGSC_v3.4	6	132,295,562 - 132,295,973	UniSTS	RGSC3.4
Celera	6	124,397,874 - 124,398,285	UniSTS
Cytogenetic Map	6	q32	UniSTS

REN47704

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	126,836,818 - 126,837,102 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,836,385 - 131,836,668	NCBI	Rnor6.0
Rnor_5.0	6	141,006,765 - 141,007,048	UniSTS	Rnor5.0
RGSC_v3.4	6	132,293,857 - 132,294,140	UniSTS	RGSC3.4
Celera	6	124,396,169 - 124,396,452	UniSTS
Cytogenetic Map	6	q32	UniSTS

REN47709

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	126,838,402 - 126,838,659 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,837,969 - 131,838,225	NCBI	Rnor6.0
Rnor_5.0	6	141,008,349 - 141,008,605	UniSTS	Rnor5.0
RGSC_v3.4	6	132,295,441 - 132,295,697	UniSTS	RGSC3.4
Celera	6	124,397,753 - 124,398,009	UniSTS
Cytogenetic Map	6	q32	UniSTS

REN47699

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	126,835,712 - 126,835,946 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,835,279 - 131,835,512	NCBI	Rnor6.0
Rnor_5.0	6	141,005,659 - 141,005,892	UniSTS	Rnor5.0
RGSC_v3.4	6	132,292,751 - 132,292,984	UniSTS	RGSC3.4
Celera	6	124,395,063 - 124,395,296	UniSTS
Cytogenetic Map	6	q32	UniSTS

REN47882

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	126,875,656 - 126,875,897 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,875,262 - 131,875,502	NCBI	Rnor6.0
Rnor_5.0	6	141,045,642 - 141,045,882	UniSTS	Rnor5.0
RGSC_v3.4	6	132,332,696 - 132,332,936	UniSTS	RGSC3.4
Celera	6	124,435,125 - 124,435,365	UniSTS
Cytogenetic Map	6	q32	UniSTS

REN47927

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	126,883,083 - 126,883,373 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,882,687 - 131,882,976	NCBI	Rnor6.0
Rnor_5.0	6	141,053,067 - 141,053,356	UniSTS	Rnor5.0
RGSC_v3.4	6	132,340,121 - 132,340,410	UniSTS	RGSC3.4
Celera	6	124,442,550 - 124,442,839	UniSTS
Cytogenetic Map	6	q32	UniSTS

REN47976

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	132,657,858 - 132,658,144 (+)	Marker Load Pipeline
mRatBN7.2	6	126,893,425 - 126,893,712 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,893,029 - 131,893,315	NCBI	Rnor6.0
Rnor_5.0	6	141,063,409 - 141,063,695	UniSTS	Rnor5.0
RGSC_v3.4	6	132,350,463 - 132,350,749	UniSTS	RGSC3.4
Celera	6	124,452,989 - 124,453,275	UniSTS
Cytogenetic Map	6	q32	UniSTS

Bcl11b

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	126,837,375 - 126,837,775 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	131,836,942 - 131,837,341	NCBI	Rnor6.0
Rnor_5.0	6	141,007,322 - 141,007,721	UniSTS	Rnor5.0
Celera	6	124,396,726 - 124,397,125	UniSTS
Cytogenetic Map	6	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	9	67	152	74	73	42	92	42	6	336	189	11	124	81	92	31	9	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001277287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001277288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC116075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JF520428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JF520429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007602 ⟹ ENSRNOP00000007602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	132,601,744 - 132,678,660 (-)	Ensembl
mRatBN7.2 Ensembl	6	126,837,307 - 126,914,229 (-)	Ensembl
Rnor_6.0 Ensembl	6	131,836,674 - 131,914,028 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084057 ⟹ ENSRNOP00000068641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	132,598,968 - 132,678,660 (-)	Ensembl
mRatBN7.2 Ensembl	6	126,834,531 - 126,914,229 (-)	Ensembl
Rnor_6.0 Ensembl	6	131,834,097 - 131,926,272 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088421 ⟹ ENSRNOP00000069404

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	132,598,968 - 132,678,086 (-)	Ensembl
mRatBN7.2 Ensembl	6	126,834,531 - 126,913,655 (-)	Ensembl
Rnor_6.0 Ensembl	6	131,834,097 - 131,926,272 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098362 ⟹ ENSRNOP00000091986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	132,598,968 - 132,691,301 (-)	Ensembl
mRatBN7.2 Ensembl	6	126,834,531 - 126,928,224 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099802 ⟹ ENSRNOP00000084654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	132,600,743 - 132,691,301 (-)	Ensembl
mRatBN7.2 Ensembl	6	126,835,192 - 126,928,224 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111465 ⟹ ENSRNOP00000078832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	132,598,968 - 132,691,301 (-)	Ensembl
mRatBN7.2 Ensembl	6	126,834,531 - 126,928,224 (-)	Ensembl

RefSeq Acc Id:

NM_001277287 ⟹ NP_001264216

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	132,598,968 - 132,691,102 (-)	NCBI
mRatBN7.2	6	126,834,531 - 126,926,674 (-)	NCBI
Rnor_6.0	6	131,834,097 - 131,926,272 (-)	NCBI
Rnor_5.0	6	141,004,477 - 141,097,643 (-)	NCBI
Celera	6	124,393,881 - 124,486,186 (-)	NCBI

Sequence:

show sequence

ATGTCCCGCCGCAAACAGGGCAACCCGCAGCACTTGTCCCAGAGGGAACTCATCACGCCAGAGG
CTGACCATGTGGAGGCTGCTATCCTCGAGGAAGATGAGGGTCTGGAGATAGAAGAGCCTAGCAG
CCTGGGGCTGATGGTGGGCGGCCCCGACCCTGACCTACTCACCTGTGGCCAGTGTCAGATGAAC
TTCCCGCTGGGGGACATCCTGGTTTTTATAGAGCACAAGAAGAAACAGTGTGGGGGCCTGGGCT
CCTGCTACGACAAGGTACTGGACAAGGGAAGCCCTCCGCCTTCCTCTCGCTCTGAGCTCAGGAG
AGTGTCTGAACCAGTGGAGATCGGGATCCAGGTCACCCCCGATGAAGATGACCATCTACTGTCA
CCCACGAAAGGCATCTGTCCCAAGCAGGAGAACATTGCAGGGCCGTGCAGGCCTGCCCAGCTGC
CATCGATGGCCCCCATAGCTGCCTCCTCTTCCCACCCTCCCACCTCCGTGATTACTTCACCTCT
GCGTGCCCTGGGCGTTCTCCCACCCTGTTTCCCGCTGCCTTGCTGTGGTGCACGCCCCATCTCG
GGCGACGGGACTCAGGGTGAGGGTCAGATGGAGGCTCCCTTTGGATGCCAGTGTAAAGATGAGC
CTTCCAGCTACATTTGCACAACATGTAAGCAGCCCTTCAACAGCGCCTGGTTCCTGCTGCAACA
TGCGCAGAACACGCATGGCTTCCGCATCTACCTGGAGCCCGGGCCCGCCAGCACCTCGCTCACG
CCCAGGCTCACCATCCCGCCGCCGCTCGGGCCGGAGGCCGTGGCGCAGTCCCCACTCATGAATT
TCCTCGGGGACAGCAATCCTTTCAACCTGCTGCGCATGACGGGCCCCATCCTGCGGGACCACCC
CGGCTTCGGAGAGGGCCGCCTGCCCGGTACGCCACCGCTCTTCAGCCCACCGCCACGCCATCAC
TTGGACCCACACCGCCTCAGTGCAGAGGAGATGGGGCTCGTGGCCCAGCACCCCAGTGCCTTCG
ACCGAGTCATGCGCCTGAACCCCATGGCCATAGACTCTCCCGCCATGGACTTCTCTCGGCGGCT
GCGAGAACTGGCCGGTAACAGCTCCACACCGCCGCCCGTGTCCCCAGGCCGTGGCAACCCTATG
CACCGGCTGCTGAACCCTTTTCAGCCCAGCCCCAAGTCCCCGTTCCTCAGCACGCCACCGCTGC
CACCCATGCCCACGGGCACGCCGCCACCGCAGCCGCCTGCCAAGAGCAAGTCCTGTGAGTTCTG
CGGCAAGACCTTCAAATTCCAGAGCAATCTCATCGTGCACCGGCGCAGCCACACGGGCGAGAAG
CCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCACATGA
AGACGCACATGCACAAGGCGGGCTCGCTGGCTGGCCGCTCAGACGATGGGCTCTCGGCCGCCAG
CTCCCCAGAGCCCGGCACCAGCGAGCTGCCAGGTGACCTCAAAGCGGCCGATGGCGACTTCCGC
CACCATGAGAGCGACCCATCTCTGGGACCCGAGCCTGAGGACGACGAGGACGAGGAGGAGGAAG
AAGAAGAGCTGCTGCTGGAGAATGAAAGCCGACCTGAGTCGAGCTTCAGCATGGACTCGGAGCT
GGGCCGTGGCCGCGAGAATGGGGGTGGTGTGCCACCAGGGGTGGCGGGCGCGGGGGCTGCAGCT
GCGGCTCTGGCAGATGAGAAGGCGCTGGCATTGGGCAAGGTGATGGAGGACGCAGGGCTGGGCG
CACTGCCGCAGTATGGGGAGAAGCGAGGCGCCTTCCTGAAGCGTGCAGGCGACGCGGGTGACAC
CGGAGCTGGTGGCTGCGGGGATGCAGGTGCACCGGGCGCAGTGAACGGGCGTGGCGGGGCCTTC
GCGCCAGGCGCAGAGCCCTTCCCAGCGCTCTTCCCACGCAAGCCCGCACCGCTGCCCAGCCCGG
GGCTTGGTGGTCCTGCGCTACACGCGGCCAAGCGCATCAAGGTGGAGAAGGACCTGGAGCTGCC
ACCCGCCGCCCTCATCCCATCCGAGAACGTGTACTCGCAGTGGCTCGTGGGCTACGCGGCGTCG
CGCCACTTCATGAAGGACCCGTTCCTGGGCTTCACGGATGCGCGCCAGTCGCCTTTCGCCACGT
CGTCGGAACATTCCTCTGAGAACGGCAGCCTGCGCTTCTCCACGCCACCCGGGGACCTGCTGGA
CGGCGGGCTGTCGGGGCGCAGTGGCACGGCGAGCGGGGGCAGCACGCCTCACCTGGGTGGCCCG
GGTCCTGGGCGGCCGAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGG
TCTTCAAAAACTGTAGCAACCTGACGGTGCACCGGAGGAGCCACACCGGCGAGCGGCCTTACAA
GTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTTACGCGCCACATGAAGACGCAC
GGTCAGATCGGCAAGGAGGTGTACCGCTGCGATATCTGCCAGATGCCCTTCAGTGTCTACAGTA
CCCTGGAGAAACACATGAAAAAGTGGCACGGTGAACACTTGCTGACTAATGATGTCAAAATCGA
GCAGGCTGAGAGGAGCTAAGCGTGTACGCGGGGGACGCCGCGTGCGTGCATCTGTACAGCGTGA
CCATCGCCAACCTTCGCCAACGGGACCCGGTGACCGGACTGGCCTCTGCATCCCCGGGGCTCAG
GGAGGCGGCAGTCCAACCTAACCTGTGTCTGCGAAGTCCTATGGAAACCTGAGGGTTGATTAAG
GCAGTAAAAAATTAAAAAAAAAATTGTGGAGCCTTTTAACTGTGCAATAATTTCTGTATTTATT
GGGTTTTGTAATTTTTTTGGCATGTACGTGCAGGTACCTATTATTATTATTATTTCTGTTTAAA
TTCCTTTAAAAGATTTTGTTGAGTATCCATCCCTTCATTTTTTTTAAGAACCCAGTAGTAGTCT
GAGCAATGACTCGCAAGTGATGTAGAGGGAAGCTATCTTTTAAATTATAATTTTTTTTGTGTGT
GTGTGTGGGGGGGGTGCTGCTTTTTTGAAATTTAAGCTAAGCATGTGTAATTTCTTGTCAAGAA
GCCAACACTTAAATGACTTTTAAAGTTGTTTGCGTTTTCATCATTTATTTTGTTCTGAAATGAA
AAGTGGCATGTGGGATTTTTTTTTTCGGGGGAGGGGGGAGGGGTGGCTTTCAAAAACCATTTTT
TTTTTCCGGGAGGTGGATGTACAGCGGATTACAATCTTTAAAATTGTAGCACTTTGTTTTAGCA
TCGCATTGGAGAGGTAGCACTGATGTCCTCCTGACCCACAGAGGCTTCTCTGTGCGGAATTCAA
CTTTCATGCTATGGAAGGAAAACTTTGAGGGGGGCGCGGCAAACGAGCCTCTCCCCCACTCGGG
ACCCCGAGAATCTTTTCCAGGGTGACTCTAGGAATAGCCCCCGAATTCTGCAATTGTGCATTAC
CAGGAGATACGATACTGTCCTTTTCTGGAGGGAGCTTGGCGTATTCTGGGAAGCCACCTCTGCC
CTGTGCTGTAGACTTGGCTGCATAAAATGGGCTGAGGGCACCCACTGGGTAGACAGCAGTGGCC
TGTAGTGGCAGGAAGAAGGAGAGTAGCAATGCTCTCTCTCTGGCACCATGGGTTCTCTTTTCAG
CCCCCAGCCTACAGATAAATCCCAGGTGTCCATTGCTACGGTGGTAATTGACCATGTCCCAAGC
AGACAACTGGCCCTTGTGGTGTACTGGAGAAGTTAGCTGCGGGGTCGCTGATCTCACGCTGATA
GGCACTTAGGGCAGGGGAATCTCGCCTGTTCTCTTCCCGGAGGAGTTGGGAAGAGTTCTGCCCA
AGGTGCCCCCACGCTGCTTCCATTTCTGTATTGTGTCTTTTCCTCCCTCCGCTTAGTTGGGACA
TAACTATACATTGGACTTGTTGGGATTTGATGTTTGAATTCTGTTGACCCGCACTTTAAAGCTT
TTGTTTGCATTTAAATTAAATGGCTTCTAAACAAGAAATTGCAGCATATTCTTGTCTTTGGCCC
AGAGGTGGGTTAAACTGTAAGGGACAGCTGAGATTGAGTGTCAGTGTTGCTAAGCGTGGCATTC
ACAATACTGGCACTATAAAGAACAAAATTAAATAATTTATTGGACAGTTTCTCTACTGCCATTC
AATTTGATGTGCGTGCCTTGAAAACTGATCTTCCTATTTGAGTCTCTTGAGACAAATGCAAAAC
TCTCTCTCTCTTTTTTTTTGAGATGAAAAGACTTTTTAAAAAGCAAACAAGAGAAGTACATTCT
TTAGAAACAAAGCCACATTTACTTTAAATTAAAAAAAAAAAACAATTCCTGGTTGAAGATAGAG
GACGGGAAAATGTCATAAGATCCAGTCAAATGAAGAATTAAACCCAGCACAGCCCTGGACATCC
ATTAGCAGACTTGTTTTCAGACCCCCCCCCCCCTTTTTTGGGACAAAGCTGCTTAGATACGGAG
TGGAGGTGACTTACTGCTGAATTAAAAGTCATGTGATACAAGCTGATATCGTTGAATGAAAAAA
AACAAACAACAAAAACAATTCAGGAACAATGGCTAATTTTTTTTCTCCTAAATATAAATTTAGT
GCACTCTGTCTTAAAAATACGTTTACAGTATTGGATACATACAAGGGTAAAATAAATCGTGTGT
ATGTGTGTTGGAGCGATCTTTTTATTTTATTTTATTTTCAGCGTTTGCTTAATAGGTTATACAG
AAATGCCACAATGGCTGGGTGTATGTTGTTTTCCTTTGGTGACGGGATTTTAGTATACATTATA
TATATTGAAATTTCTTGATTACTGTCAAAGTGGACCAGTATTTGTAATAATTGAGATTGCCTGG
GCATTTTACAAAAATGAGAAGAAAAAAAAGTCCTTTTTCTTTTCCTTGAAACCGTTACAGTAAG
TTTTAAATGGTGGGTCTATAAAATCTGTTCTGTCATAGTAACCTGTAAAGTCGGAGTTTTAGTA
TAAATTTTTTTCTGCCTCGGGTGTTGAATTTTTATTTTGAAAACAAAATGTATAGAAACTTGTA
TTTGGGGAATTAAAGGGGGATTGCTACAATGTGTAGAAAAAGTATGTAGAGAAAGTGCTTAATA
TTGTTACTGCTTTGCAGAAGAAGAAAAAAAAATCACACTTCTGGCCTGTACTTATTTTCTCTCT
CCCACCTCCCTCTGGAATGGATATATTGGTCGGTTCATATGATGTAGGCTCTCGCTGTATTTTT
ACTGGAGCTTGTAATTTTTTAACTGTAAGCTTGTCCTTTTAAAGGGATTTAATGTACCTTTTTG
TTAGTGAATTTGGAAATAAAAAGAAAAAAAAAACAAAACCCAA

hide sequence

RefSeq Acc Id:

NM_001277288 ⟹ NP_001264217

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	132,598,968 - 132,691,102 (-)	NCBI
mRatBN7.2	6	126,834,531 - 126,926,674 (-)	NCBI
Rnor_6.0	6	131,834,097 - 131,926,272 (-)	NCBI
Rnor_5.0	6	141,004,477 - 141,097,643 (-)	NCBI
Celera	6	124,393,881 - 124,486,186 (-)	NCBI

Sequence:

show sequence

ATGTCCCGCCGCAAACAGGGCAACCCGCAGCACTTGTCCCAGAGGGAACTCATCACGCCAGAGG
CTGACCATGTGGAGGCTGCTATCCTCGAGGAAGATGAGGGTCTGGAGATAGAAGAGCCTAGCAG
CCTGGGGCTGATGGTGGGCGGCCCCGACCCTGACCTACTCACCTGTGGCCAGTGTCAGATGAAC
TTCCCGCTGGGGGACATCCTGGTTTTTATAGAGCACAAGAAGAAACAGTGTGGGGGCCTGGGCT
CCTGCTACGACAAGGTACTGGACAAGGGAAGCCCTCCGCCTTCCTCTCGCTCTGAGCTCAGGAG
AGTGTCTGAACCAGTGGAGATCGGGATCCAGGTCACCCCCGATGAAGATGACCATCTACTGTCA
CCCACGAAAGGCATCTGTCCCAAGCAGGAGAACATTGCAGGTAAAGATGAGCCTTCCAGCTACA
TTTGCACAACATGTAAGCAGCCCTTCAACAGCGCCTGGTTCCTGCTGCAACATGCGCAGAACAC
GCATGGCTTCCGCATCTACCTGGAGCCCGGGCCCGCCAGCACCTCGCTCACGCCCAGGCTCACC
ATCCCGCCGCCGCTCGGGCCGGAGGCCGTGGCGCAGTCCCCACTCATGAATTTCCTCGGGGACA
GCAATCCTTTCAACCTGCTGCGCATGACGGGCCCCATCCTGCGGGACCACCCCGGCTTCGGAGA
GGGCCGCCTGCCCGGTACGCCACCGCTCTTCAGCCCACCGCCACGCCATCACTTGGACCCACAC
CGCCTCAGTGCAGAGGAGATGGGGCTCGTGGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGC
GCCTGAACCCCATGGCCATAGACTCTCCCGCCATGGACTTCTCTCGGCGGCTGCGAGAACTGGC
CGGTAACAGCTCCACACCGCCGCCCGTGTCCCCAGGCCGTGGCAACCCTATGCACCGGCTGCTG
AACCCTTTTCAGCCCAGCCCCAAGTCCCCGTTCCTCAGCACGCCACCGCTGCCACCCATGCCCA
CGGGCACGCCGCCACCGCAGCCGCCTGCCAAGAGCAAGTCCTGTGAGTTCTGCGGCAAGACCTT
CAAATTCCAGAGCAATCTCATCGTGCACCGGCGCAGCCACACGGGCGAGAAGCCCTACAAGTGC
CAGCTGTGCGACCACGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCACATGAAGACGCACATGC
ACAAGGCGGGCTCGCTGGCTGGCCGCTCAGACGATGGGCTCTCGGCCGCCAGCTCCCCAGAGCC
CGGCACCAGCGAGCTGCCAGGTGACCTCAAAGCGGCCGATGGCGACTTCCGCCACCATGAGAGC
GACCCATCTCTGGGACCCGAGCCTGAGGACGACGAGGACGAGGAGGAGGAAGAAGAAGAGCTGC
TGCTGGAGAATGAAAGCCGACCTGAGTCGAGCTTCAGCATGGACTCGGAGCTGGGCCGTGGCCG
CGAGAATGGGGGTGGTGTGCCACCAGGGGTGGCGGGCGCGGGGGCTGCAGCTGCGGCTCTGGCA
GATGAGAAGGCGCTGGCATTGGGCAAGGTGATGGAGGACGCAGGGCTGGGCGCACTGCCGCAGT
ATGGGGAGAAGCGAGGCGCCTTCCTGAAGCGTGCAGGCGACGCGGGTGACACCGGAGCTGGTGG
CTGCGGGGATGCAGGTGCACCGGGCGCAGTGAACGGGCGTGGCGGGGCCTTCGCGCCAGGCGCA
GAGCCCTTCCCAGCGCTCTTCCCACGCAAGCCCGCACCGCTGCCCAGCCCGGGGCTTGGTGGTC
CTGCGCTACACGCGGCCAAGCGCATCAAGGTGGAGAAGGACCTGGAGCTGCCACCCGCCGCCCT
CATCCCATCCGAGAACGTGTACTCGCAGTGGCTCGTGGGCTACGCGGCGTCGCGCCACTTCATG
AAGGACCCGTTCCTGGGCTTCACGGATGCGCGCCAGTCGCCTTTCGCCACGTCGTCGGAACATT
CCTCTGAGAACGGCAGCCTGCGCTTCTCCACGCCACCCGGGGACCTGCTGGACGGCGGGCTGTC
GGGGCGCAGTGGCACGGCGAGCGGGGGCAGCACGCCTCACCTGGGTGGCCCGGGTCCTGGGCGG
CCGAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTCTTCAAAAACT
GTAGCAACCTGACGGTGCACCGGAGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTG
CAACTACGCGTGCGCGCAGAGCAGCAAGCTTACGCGCCACATGAAGACGCACGGTCAGATCGGC
AAGGAGGTGTACCGCTGCGATATCTGCCAGATGCCCTTCAGTGTCTACAGTACCCTGGAGAAAC
ACATGAAAAAGTGGCACGGTGAACACTTGCTGACTAATGATGTCAAAATCGAGCAGGCTGAGAG
GAGCTAAGCGTGTACGCGGGGGACGCCGCGTGCGTGCATCTGTACAGCGTGACCATCGCCAACC
TTCGCCAACGGGACCCGGTGACCGGACTGGCCTCTGCATCCCCGGGGCTCAGGGAGGCGGCAGT
CCAACCTAACCTGTGTCTGCGAAGTCCTATGGAAACCTGAGGGTTGATTAAGGCAGTAAAAAAT
TAAAAAAAAAATTGTGGAGCCTTTTAACTGTGCAATAATTTCTGTATTTATTGGGTTTTGTAAT
TTTTTTGGCATGTACGTGCAGGTACCTATTATTATTATTATTTCTGTTTAAATTCCTTTAAAAG
ATTTTGTTGAGTATCCATCCCTTCATTTTTTTTAAGAACCCAGTAGTAGTCTGAGCAATGACTC
GCAAGTGATGTAGAGGGAAGCTATCTTTTAAATTATAATTTTTTTTGTGTGTGTGTGTGGGGGG
GGTGCTGCTTTTTTGAAATTTAAGCTAAGCATGTGTAATTTCTTGTCAAGAAGCCAACACTTAA
ATGACTTTTAAAGTTGTTTGCGTTTTCATCATTTATTTTGTTCTGAAATGAAAAGTGGCATGTG
GGATTTTTTTTTTCGGGGGAGGGGGGAGGGGTGGCTTTCAAAAACCATTTTTTTTTTCCGGGAG
GTGGATGTACAGCGGATTACAATCTTTAAAATTGTAGCACTTTGTTTTAGCATCGCATTGGAGA
GGTAGCACTGATGTCCTCCTGACCCACAGAGGCTTCTCTGTGCGGAATTCAACTTTCATGCTAT
GGAAGGAAAACTTTGAGGGGGGCGCGGCAAACGAGCCTCTCCCCCACTCGGGACCCCGAGAATC
TTTTCCAGGGTGACTCTAGGAATAGCCCCCGAATTCTGCAATTGTGCATTACCAGGAGATACGA
TACTGTCCTTTTCTGGAGGGAGCTTGGCGTATTCTGGGAAGCCACCTCTGCCCTGTGCTGTAGA
CTTGGCTGCATAAAATGGGCTGAGGGCACCCACTGGGTAGACAGCAGTGGCCTGTAGTGGCAGG
AAGAAGGAGAGTAGCAATGCTCTCTCTCTGGCACCATGGGTTCTCTTTTCAGCCCCCAGCCTAC
AGATAAATCCCAGGTGTCCATTGCTACGGTGGTAATTGACCATGTCCCAAGCAGACAACTGGCC
CTTGTGGTGTACTGGAGAAGTTAGCTGCGGGGTCGCTGATCTCACGCTGATAGGCACTTAGGGC
AGGGGAATCTCGCCTGTTCTCTTCCCGGAGGAGTTGGGAAGAGTTCTGCCCAAGGTGCCCCCAC
GCTGCTTCCATTTCTGTATTGTGTCTTTTCCTCCCTCCGCTTAGTTGGGACATAACTATACATT
GGACTTGTTGGGATTTGATGTTTGAATTCTGTTGACCCGCACTTTAAAGCTTTTGTTTGCATTT
AAATTAAATGGCTTCTAAACAAGAAATTGCAGCATATTCTTGTCTTTGGCCCAGAGGTGGGTTA
AACTGTAAGGGACAGCTGAGATTGAGTGTCAGTGTTGCTAAGCGTGGCATTCACAATACTGGCA
CTATAAAGAACAAAATTAAATAATTTATTGGACAGTTTCTCTACTGCCATTCAATTTGATGTGC
GTGCCTTGAAAACTGATCTTCCTATTTGAGTCTCTTGAGACAAATGCAAAACTCTCTCTCTCTT
TTTTTTTGAGATGAAAAGACTTTTTAAAAAGCAAACAAGAGAAGTACATTCTTTAGAAACAAAG
CCACATTTACTTTAAATTAAAAAAAAAAAACAATTCCTGGTTGAAGATAGAGGACGGGAAAATG
TCATAAGATCCAGTCAAATGAAGAATTAAACCCAGCACAGCCCTGGACATCCATTAGCAGACTT
GTTTTCAGACCCCCCCCCCCCTTTTTTGGGACAAAGCTGCTTAGATACGGAGTGGAGGTGACTT
ACTGCTGAATTAAAAGTCATGTGATACAAGCTGATATCGTTGAATGAAAAAAAACAAACAACAA
AAACAATTCAGGAACAATGGCTAATTTTTTTTCTCCTAAATATAAATTTAGTGCACTCTGTCTT
AAAAATACGTTTACAGTATTGGATACATACAAGGGTAAAATAAATCGTGTGTATGTGTGTTGGA
GCGATCTTTTTATTTTATTTTATTTTCAGCGTTTGCTTAATAGGTTATACAGAAATGCCACAAT
GGCTGGGTGTATGTTGTTTTCCTTTGGTGACGGGATTTTAGTATACATTATATATATTGAAATT
TCTTGATTACTGTCAAAGTGGACCAGTATTTGTAATAATTGAGATTGCCTGGGCATTTTACAAA
AATGAGAAGAAAAAAAAGTCCTTTTTCTTTTCCTTGAAACCGTTACAGTAAGTTTTAAATGGTG
GGTCTATAAAATCTGTTCTGTCATAGTAACCTGTAAAGTCGGAGTTTTAGTATAAATTTTTTTC
TGCCTCGGGTGTTGAATTTTTATTTTGAAAACAAAATGTATAGAAACTTGTATTTGGGGAATTA
AAGGGGGATTGCTACAATGTGTAGAAAAAGTATGTAGAGAAAGTGCTTAATATTGTTACTGCTT
TGCAGAAGAAGAAAAAAAAATCACACTTCTGGCCTGTACTTATTTTCTCTCTCCCACCTCCCTC
TGGAATGGATATATTGGTCGGTTCATATGATGTAGGCTCTCGCTGTATTTTTACTGGAGCTTGT
AATTTTTTAACTGTAAGCTTGTCCTTTTAAAGGGATTTAATGTACCTTTTTGTTAGTGAATTTG
GAAATAAAAAGAAAAAAAAAACAAAACCCAA

hide sequence

RefSeq Acc Id:

XM_006240540 ⟹ XP_006240602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	132,598,973 - 132,692,120 (-)	NCBI
mRatBN7.2	6	126,834,536 - 126,927,714 (-)	NCBI
Rnor_6.0	6	131,836,621 - 131,927,251 (-)	NCBI
Rnor_5.0	6	141,004,477 - 141,097,643 (-)	NCBI

Sequence:

show sequence

TTAAACGTCACGTCCGCACTTGAACTTGAATTTTATCCCATTGTACAGAGGCAGCCCCAGCCAC
AGAGAGACCGAGAGCTCCCGGAGAACCCGGACTCCGCCATCTTCACGTTGCAATCTATAGCTCC
CGTCCACGCCCGCACCGACCCGGGCGCATTGGGCGAGCCGCCCCGCAGTCCCGCTCCCCCTGGG
CCGGCGGCGCCGGGCAGCGCTGGGGAGCGCACGCGGGGACCCGCAGCCCCTCCGGCCGGCGCCA
GCCTGCCAGGTGACCCGGGAAGGAGCCGCTCCCGGAGTCCCCCAGAGCCTCGGAGGGGTCAGCC
TCCGAGAAAGAAAAAAAGCAGGCAGCGCGCAGAAAACCCAGAAAGAACCGAACCAAGGCAGTTT
TTCATTGCTTTCGGGTTTTTTGAGGGGGCGGGGTGAGGGGGTACGAGACAAGTCCCCAAGTTTT
CTTTGCCTTTTTTTTTTTTTTTGCTTTTTTGAAATTTGTTTGCATTTTTCCTCCCCCCTCCCCT
TGGGTGGAAGTGCGCGTTCCACCTACCAGACCCCGAAAGAAAAGTGTCAGAGGCCGGTGCAAAA
CCCGGCGTAACTTCAAGAAGACATTTACAAGTCTAAGAGGCCAAGCACTTTGAAGAAGTGTGAG
AGATATTTTTCCTCCAAAAGAATATATTTTTAAAGAAACCGGCCAGCCCGCGGCGAGCAACAGC
AGCTTTATAATTTATTTTAGCCTTTCTCTATTTTAGAGCAAGCCATCTTCCTGGCTTTTTCTTT
TTTCTTTTTGCAAAAACAAAAACAAAAACACAGCCCAGAAGAAAAAGCAAAATAAAGACGAAGA
AGAAGAAGAAGAGGAGGAAGAGAGGAAGGGCAGAGGCACCAACCCGGGCGGAGGAGGAGGCGCG
GCGGCGGCGGCGGCGGCTCAGACCCCCTCCCCGGCCCGCATCTGTGCAGCTTTCCGGGCGATGC
CAGAATAGATGCCGGGGCAATGTCCCGCCGCAAACAGGGCAACCCGCAGCACTTGTCCCAGAGG
GAACTCATCACGCAGGCTGACCATGTGGAGGCTGCTATCCTCGAGGAAGATGAGGGTCTGGAGA
TAGAAGAGCCTAGCAGCCTGGGGCTGATGGTGGGCGGCCCCGACCCTGACCTACTCACCTGTGG
CCAGTGTCAGATGAACTTCCCGCTGGGGGACATCCTGGTTTTTATAGAGCACAAGAAGAAACAG
TGTGGGGGCCTGGGCTCCTGCTACGACAAGGTACTGGACAAGGGAAGCCCTCCGCCTTCCTCTC
GCTCTGAGCTCAGGAGAGTGTCTGAACCAGTGGAGATCGGGATCCAGGTCACCCCCGATGAAGA
TGACCATCTACTGTCACCCACGAAAGGCATCTGTCCCAAGCAGGAGAACATTGCAGGTAAAGAT
GAGCCTTCCAGCTACATTTGCACAACATGTAAGCAGCCCTTCAACAGCGCCTGGTTCCTGCTGC
AACATGCGCAGAACACGCATGGCTTCCGCATCTACCTGGAGCCCGGGCCCGCCAGCACCTCGCT
CACGCCCAGGCTCACCATCCCGCCGCCGCTCGGGCCGGAGGCCGTGGCGCAGTCCCCACTCATG
AATTTCCTCGGGGACAGCAATCCTTTCAACCTGCTGCGCATGACGGGCCCCATCCTGCGGGACC
ACCCCGGCTTCGGAGAGGGCCGCCTGCCCGGTACGCCACCGCTCTTCAGCCCACCGCCACGCCA
TCACTTGGACCCACACCGCCTCAGTGCAGAGGAGATGGGGCTCGTGGCCCAGCACCCCAGTGCC
TTCGACCGAGTCATGCGCCTGAACCCCATGGCCATAGACTCTCCCGCCATGGACTTCTCTCGGC
GGCTGCGAGAACTGGCCGGTAACAGCTCCACACCGCCGCCCGTGTCCCCAGGCCGTGGCAACCC
TATGCACCGGCTGCTGAACCCTTTTCAGCCCAGCCCCAAGTCCCCGTTCCTCAGCACGCCACCG
CTGCCACCCATGCCCACGGGCACGCCGCCACCGCAGCCGCCTGCCAAGAGCAAGTCCTGTGAGT
TCTGCGGCAAGACCTTCAAATTCCAGAGCAATCTCATCGTGCACCGGCGCAGCCACACGGGCGA
GAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCAC
ATGAAGACGCACATGCACAAGGCGGGCTCGCTGGCTGGCCGCTCAGACGATGGGCTCTCGGCCG
CCAGCTCCCCAGAGCCCGGCACCAGCGAGCTGCCAGGTGACCTCAAAGCGGCCGATGGCGACTT
CCGCCACCATGAGAGCGACCCATCTCTGGGACCCGAGCCTGAGGACGACGAGGACGAGGAGGAG
GAAGAAGAAGAGCTGCTGCTGGAGAATGAAAGCCGACCTGAGTCGAGCTTCAGCATGGACTCGG
AGCTGGGCCGTGGCCGCGAGAATGGGGGTGGTGTGCCACCAGGGGTGGCGGGCGCGGGGGCTGC
AGCTGCGGCTCTGGCAGATGAGAAGGCGCTGGCATTGGGCAAGGTGATGGAGGACGCAGGGCTG
GGCGCACTGCCGCAGTATGGGGAGAAGCGAGGCGCCTTCCTGAAGCGTGCAGGCGACGCGGGTG
ACACCGGAGCTGGTGGCTGCGGGGATGCAGGTGCACCGGGCGCAGTGAACGGGCGTGGCGGGGC
CTTCGCGCCAGGCGCAGAGCCCTTCCCAGCGCTCTTCCCACGCAAGCCCGCACCGCTGCCCAGC
CCGGGGCTTGGTGGTCCTGCGCTACACGCGGCCAAGCGCATCAAGGTGGAGAAGGACCTGGAGC
TGCCACCCGCCGCCCTCATCCCATCCGAGAACGTGTACTCGCAGTGGCTCGTGGGCTACGCGGC
GTCGCGCCACTTCATGAAGGACCCGTTCCTGGGCTTCACGGATGCGCGCCAGTCGCCTTTCGCC
ACGTCGTCGGAACATTCCTCTGAGAACGGCAGCCTGCGCTTCTCCACGCCACCCGGGGACCTGC
TGGACGGCGGGCTGTCGGGGCGCAGTGGCACGGCGAGCGGGGGCAGCACGCCTCACCTGGGTGG
CCCGGGTCCTGGGCGGCCGAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGC
AAGGTCTTCAAAAACTGTAGCAACCTGACGGTGCACCGGAGGAGCCACACCGGCGAGCGGCCTT
ACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTTACGCGCCACATGAAGAC
GCACGGTCAGATCGGCAAGGAGGTGTACCGCTGCGATATCTGCCAGATGCCCTTCAGTGTCTAC
AGTACCCTGGAGAAACACATGAAAAAGTGGCACGGTGAACACTTGCTGACTAATGATGTCAAAA
TCGAGCAGGCTGAGAGGAGCTAAGCGTGTACGCGGGGGACGCCGCGTGCGTGCATCTGTACAGC
GTGACCATCGCCAACCTTCGCCAACGGGACCCGGTGACCGGACTGGCCTCTGCATCCCCGGGGC
TCAGGGAGGCGGCAGTCCAACCTAACCTGTGTCTGCGAAGTCCTATGGAAACCTGAGGGTTGAT
TAAGGCAGTAAAAAATTAAAAAAAAAATTGTGGAGCCTTTTAACTGTGCAATAATTTCTGTATT
TATTGGGTTTTGTAATTTT

hide sequence

RefSeq Acc Id:

XM_039112399 ⟹ XP_038968327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	132,598,973 - 132,692,122 (-)	NCBI
mRatBN7.2	6	126,834,536 - 126,927,719 (-)	NCBI

RefSeq Acc Id:

XM_039112400 ⟹ XP_038968328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	132,598,973 - 132,692,123 (-)	NCBI
mRatBN7.2	6	126,834,536 - 126,927,720 (-)	NCBI

RefSeq Acc Id:

XM_063262010 ⟹ XP_063118080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	132,598,973 - 132,692,123 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001264216	(Get FASTA)	NCBI Sequence Viewer
	NP_001264217	(Get FASTA)	NCBI Sequence Viewer
	XP_006240602	(Get FASTA)	NCBI Sequence Viewer
	XP_038968327	(Get FASTA)	NCBI Sequence Viewer
	XP_038968328	(Get FASTA)	NCBI Sequence Viewer
	XP_063118080	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AFC78125	(Get FASTA)	NCBI Sequence Viewer
	AFC78126	(Get FASTA)	NCBI Sequence Viewer
	EDL97580	(Get FASTA)	NCBI Sequence Viewer
	EDL97581	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007602.5
	ENSRNOP00000068641.2
	ENSRNOP00000069404.2
	ENSRNOP00000078832
	ENSRNOP00000078832.1
	ENSRNOP00000084654.1
	ENSRNOP00000091986
	ENSRNOP00000091986.1

RefSeq Acc Id:	NP_001264217 ⟸ NM_001277288
- Peptide Label:	isoform 2
- UniProtKB:	H9N1L3 (UniProtKB/TrEMBL), A0A0G2JVA1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRRKQGNPQHLSQRELITPEADHVEAAILEEDEGLEIEEPSSLGLMVGGPDPDLLTCGQCQMN FPLGDILVFIEHKKKQCGGLGSCYDKVLDKGSPPPSSRSELRRVSEPVEIGIQVTPDEDDHLLS PTKGICPKQENIAGKDEPSSYICTTCKQPFNSAWFLLQHAQNTHGFRIYLEPGPASTSLTPRLT IPPPLGPEAVAQSPLMNFLGDSNPFNLLRMTGPILRDHPGFGEGRLPGTPPLFSPPPRHHLDPH RLSAEEMGLVAQHPSAFDRVMRLNPMAIDSPAMDFSRRLRELAGNSSTPPPVSPGRGNPMHRLL NPFQPSPKSPFLSTPPLPPMPTGTPPPQPPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKC QLCDHACSQASKLKRHMKTHMHKAGSLAGRSDDGLSAASSPEPGTSELPGDLKAADGDFRHHES DPSLGPEPEDDEDEEEEEEELLLENESRPESSFSMDSELGRGRENGGGVPPGVAGAGAAAAALA DEKALALGKVMEDAGLGALPQYGEKRGAFLKRAGDAGDTGAGGCGDAGAPGAVNGRGGAFAPGA EPFPALFPRKPAPLPSPGLGGPALHAAKRIKVEKDLELPPAALIPSENVYSQWLVGYAASRHFM KDPFLGFTDARQSPFATSSEHSSENGSLRFSTPPGDLLDGGLSGRSGTASGGSTPHLGGPGPGR PSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQIG KEVYRCDICQMPFSVYSTLEKHMKKWHGEHLLTNDVKIEQAERS hide sequence

RefSeq Acc Id:	NP_001264216 ⟸ NM_001277287
- Peptide Label:	isoform 1
- UniProtKB:	H9N1L4 (UniProtKB/TrEMBL), A6KBF0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRRKQGNPQHLSQRELITPEADHVEAAILEEDEGLEIEEPSSLGLMVGGPDPDLLTCGQCQMN FPLGDILVFIEHKKKQCGGLGSCYDKVLDKGSPPPSSRSELRRVSEPVEIGIQVTPDEDDHLLS PTKGICPKQENIAGPCRPAQLPSMAPIAASSSHPPTSVITSPLRALGVLPPCFPLPCCGARPIS GDGTQGEGQMEAPFGCQCKDEPSSYICTTCKQPFNSAWFLLQHAQNTHGFRIYLEPGPASTSLT PRLTIPPPLGPEAVAQSPLMNFLGDSNPFNLLRMTGPILRDHPGFGEGRLPGTPPLFSPPPRHH LDPHRLSAEEMGLVAQHPSAFDRVMRLNPMAIDSPAMDFSRRLRELAGNSSTPPPVSPGRGNPM HRLLNPFQPSPKSPFLSTPPLPPMPTGTPPPQPPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEK PYKCQLCDHACSQASKLKRHMKTHMHKAGSLAGRSDDGLSAASSPEPGTSELPGDLKAADGDFR HHESDPSLGPEPEDDEDEEEEEEELLLENESRPESSFSMDSELGRGRENGGGVPPGVAGAGAAA AALADEKALALGKVMEDAGLGALPQYGEKRGAFLKRAGDAGDTGAGGCGDAGAPGAVNGRGGAF APGAEPFPALFPRKPAPLPSPGLGGPALHAAKRIKVEKDLELPPAALIPSENVYSQWLVGYAAS RHFMKDPFLGFTDARQSPFATSSEHSSENGSLRFSTPPGDLLDGGLSGRSGTASGGSTPHLGGP GPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTH GQIGKEVYRCDICQMPFSVYSTLEKHMKKWHGEHLLTNDVKIEQAERS hide sequence

RefSeq Acc Id:	XP_006240602 ⟸ XM_006240540
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JVA1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRRKQGNPQHLSQRELITQADHVEAAILEEDEGLEIEEPSSLGLMVGGPDPDLLTCGQCQMNF PLGDILVFIEHKKKQCGGLGSCYDKVLDKGSPPPSSRSELRRVSEPVEIGIQVTPDEDDHLLSP TKGICPKQENIAGKDEPSSYICTTCKQPFNSAWFLLQHAQNTHGFRIYLEPGPASTSLTPRLTI PPPLGPEAVAQSPLMNFLGDSNPFNLLRMTGPILRDHPGFGEGRLPGTPPLFSPPPRHHLDPHR LSAEEMGLVAQHPSAFDRVMRLNPMAIDSPAMDFSRRLRELAGNSSTPPPVSPGRGNPMHRLLN PFQPSPKSPFLSTPPLPPMPTGTPPPQPPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQ LCDHACSQASKLKRHMKTHMHKAGSLAGRSDDGLSAASSPEPGTSELPGDLKAADGDFRHHESD PSLGPEPEDDEDEEEEEEELLLENESRPESSFSMDSELGRGRENGGGVPPGVAGAGAAAAALAD EKALALGKVMEDAGLGALPQYGEKRGAFLKRAGDAGDTGAGGCGDAGAPGAVNGRGGAFAPGAE PFPALFPRKPAPLPSPGLGGPALHAAKRIKVEKDLELPPAALIPSENVYSQWLVGYAASRHFMK DPFLGFTDARQSPFATSSEHSSENGSLRFSTPPGDLLDGGLSGRSGTASGGSTPHLGGPGPGRP SSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQIGK EVYRCDICQMPFSVYSTLEKHMKKWHGEHLLTNDVKIEQAERS hide sequence

Ensembl Acc Id:

ENSRNOP00000007602 ⟸ ENSRNOT00000007602

Ensembl Acc Id:

ENSRNOP00000068641 ⟸ ENSRNOT00000084057

Ensembl Acc Id:

ENSRNOP00000069404 ⟸ ENSRNOT00000088421

RefSeq Acc Id:	XP_038968328 ⟸ XM_039112400
- Peptide Label:	isoform X2
- UniProtKB:	A6KBF0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968327 ⟸ XM_039112399
- Peptide Label:	isoform X1
- UniProtKB:	A6KBF0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000091986 ⟸ ENSRNOT00000098362

Ensembl Acc Id:

ENSRNOP00000078832 ⟸ ENSRNOT00000111465

Ensembl Acc Id:

ENSRNOP00000084654 ⟸ ENSRNOT00000099802

RefSeq Acc Id:	XP_063118080 ⟸ XM_063262010
- Peptide Label:	isoform X3
- UniProtKB:	A6KBF0 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A0W4-F1-model_v2	AlphaFold	D4A0W4	1-921	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694816

Promoter ID:

EPDNEW_R5341

Type:

single initiation site

Name:

Bcl11b_1

Description:

B-cell CLL/lymphoma 11B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	131,926,366 - 131,926,426	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311128	AgrOrtholog
BioCyc Gene	G2FUF-36317	BioCyc
Ensembl Genes	ENSRNOG00000005776	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007602.7	UniProtKB/TrEMBL
	ENSRNOT00000084057.3	UniProtKB/TrEMBL
	ENSRNOT00000088421.3	UniProtKB/TrEMBL
	ENSRNOT00000098362	ENTREZGENE
	ENSRNOT00000098362.2	UniProtKB/TrEMBL
	ENSRNOT00000099802.2	UniProtKB/TrEMBL
	ENSRNOT00000111465	ENTREZGENE
	ENSRNOT00000111465.2	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	BCL-11A_Znf_CCHC	UniProtKB/TrEMBL
	Dev/Hematopoietic_TF	UniProtKB/TrEMBL
	Znf-C2H2_CTCF	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:314423	UniProtKB/TrEMBL
NCBI Gene	314423	ENTREZGENE
PANTHER	B-CELL LYMPHOMA/LEUKEMIA 11	UniProtKB/TrEMBL
	B-CELL LYMPHOMA/LEUKEMIA 11B	UniProtKB/TrEMBL
Pfam	CCHC_BCL-11A	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_16	UniProtKB/TrEMBL
PhenoGen	Bcl11b	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005776	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2JTB3_RAT	UniProtKB/TrEMBL
	A0A0G2JVA1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GC26_RAT	UniProtKB/TrEMBL
	A6KBF0	ENTREZGENE, UniProtKB/TrEMBL
	D4A0W4_RAT	UniProtKB/TrEMBL
	H9N1L3	ENTREZGENE, UniProtKB/TrEMBL
	H9N1L4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-11-28	Bcl11b	BCL11 transcription factor B	Bcl11b	BAF chromatin remodeling complex subunit BCL11B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2019-04-02	Bcl11b	BAF chromatin remodeling complex subunit BCL11B	Bcl11b	BCL11B, BAF complex component	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2018-11-09	Bcl11b	BCL11B, BAF complex component	Bcl11b	B-cell CLL/lymphoma 11B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-01-13	Bcl11b	B-cell CLL/lymphoma 11B	Bcl11b	B-cell CLL/lymphoma 11B (zinc finger protein)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Bcl11b	B-cell CLL/lymphoma 11B (zinc finger protein)	Bcl11b	B-cell leukemia/lymphoma 11B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Bcl11b	B-cell leukemia/lymphoma 11B	Bcl11b_predicted	B-cell leukemia/lymphoma 11B (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Bcl11b_predicted	B-cell leukemia/lymphoma 11B (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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