Smim14 (small integral membrane protein 14) - Rat Genome Database

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Gene: Smim14 (small integral membrane protein 14) Rattus norvegicus
Analyze
Symbol: Smim14
Name: small integral membrane protein 14
RGD ID: 1311122
Description: Predicted to act upstream of or within blastocyst hatching. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SMIM14 (small integral membrane protein 14); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC364154; LOC364154; MGC116420; RGD1311122; similar to RIKEN cDNA 1110003E01; uncharacterized protein C4orf34 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,136,754 - 43,180,622 (+)NCBIGRCr8
mRatBN7.21442,783,361 - 42,829,762 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1442,783,332 - 42,829,760 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1443,137,049 - 43,180,769 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,436,967 - 44,480,687 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01442,917,066 - 42,960,807 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,413,636 - 44,460,044 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,413,636 - 44,457,239 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,233,183 - 44,279,597 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,477,213 - 45,520,785 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11445,479,557 - 45,523,172 (+)NCBI
Celera1441,934,308 - 41,977,957 (+)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-deoxy-D-glucose  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
alpha-phellandrene  (ISO)
ampicillin  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hydroxyurea  (ISO)
indometacin  (ISO)
inulin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methyl methanesulfonate  (ISO)
niclosamide  (ISO)
nimesulide  (EXP)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:22871113   PMID:24499674   PMID:27869233  


Genomics

Comparative Map Data
Smim14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,136,754 - 43,180,622 (+)NCBIGRCr8
mRatBN7.21442,783,361 - 42,829,762 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1442,783,332 - 42,829,760 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1443,137,049 - 43,180,769 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,436,967 - 44,480,687 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01442,917,066 - 42,960,807 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,413,636 - 44,460,044 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,413,636 - 44,457,239 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,233,183 - 44,279,597 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,477,213 - 45,520,785 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11445,479,557 - 45,523,172 (+)NCBI
Celera1441,934,308 - 41,977,957 (+)NCBICelera
Cytogenetic Map14p11NCBI
SMIM14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38439,546,336 - 39,638,865 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl439,546,336 - 39,638,902 (-)EnsemblGRCh38hg38GRCh38
GRCh37439,547,956 - 39,640,485 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36439,228,930 - 39,316,876 (-)NCBINCBI36Build 36hg18NCBI36
Celera439,990,340 - 40,078,393 (-)NCBICelera
Cytogenetic Map4p14NCBI
HuRef438,877,508 - 38,965,367 (-)NCBIHuRef
CHM1_1439,552,011 - 39,639,637 (-)NCBICHM1_1
T2T-CHM13v2.0439,516,003 - 39,608,640 (-)NCBIT2T-CHM13v2.0
Smim14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,604,187 - 65,694,492 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,604,187 - 65,694,527 (-)EnsemblGRCm39 Ensembl
GRCm38565,446,844 - 65,537,149 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,446,844 - 65,537,184 (-)EnsemblGRCm38mm10GRCm38
MGSCv37565,839,994 - 65,884,074 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,728,939 - 65,771,965 (-)NCBIMGSCv36mm8
Celera562,725,901 - 62,771,366 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.69NCBI
Smim14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554437,773,552 - 7,828,545 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554437,762,760 - 7,828,545 (+)NCBIChiLan1.0ChiLan1.0
SMIM14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2339,735,661 - 39,828,092 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1439,927,667 - 40,020,179 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0433,875,253 - 33,967,498 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1439,731,976 - 39,819,160 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,731,488 - 39,819,160 (-)Ensemblpanpan1.1panPan2
SMIM14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,839,897 - 72,934,335 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl372,839,920 - 72,963,208 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha375,386,151 - 75,480,642 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0373,612,412 - 73,707,166 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl373,553,586 - 73,737,645 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1372,879,110 - 72,973,783 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0373,025,245 - 73,120,060 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0373,411,855 - 73,506,565 (+)NCBIUU_Cfam_GSD_1.0
Smim14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,091,786 - 39,166,735 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364827,131,501 - 7,206,378 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364827,131,500 - 7,206,489 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,765,418 - 30,840,434 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,765,417 - 30,840,416 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,380,447 - 32,387,014 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMIM14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12710,678,022 - 10,754,886 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2710,717,204 - 10,754,174 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604757,068,640 - 57,151,968 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248704,677,906 - 4,746,424 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248704,677,845 - 4,749,609 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Smim14
158 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:54
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000003552
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat

Markers in Region
RH130427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21442,784,604 - 42,784,818 (+)MAPPERmRatBN7.2
Rnor_6.01444,414,880 - 44,415,093NCBIRnor6.0
Rnor_5.01444,234,427 - 44,234,640UniSTSRnor5.0
RGSC_v3.41445,478,457 - 45,478,670UniSTSRGSC3.4
Celera1441,935,552 - 41,935,765UniSTS
Cytogenetic Map14p11UniSTS
RH142711  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21442,791,309 - 42,791,432 (+)MAPPERmRatBN7.2
Rnor_6.01444,421,584 - 44,421,706NCBIRnor6.0
Rnor_5.01444,241,131 - 44,241,253UniSTSRnor5.0
RGSC_v3.41445,485,162 - 45,485,284UniSTSRGSC3.4
Celera1441,942,296 - 41,942,418UniSTS
Cytogenetic Map14p11UniSTS
UniSTS:235187  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21442,787,721 - 42,787,953 (+)MAPPERmRatBN7.2
Rnor_6.01444,417,996 - 44,418,227NCBIRnor6.0
Rnor_5.01444,237,543 - 44,237,774UniSTSRnor5.0
RGSC_v3.41445,481,574 - 45,481,805UniSTSRGSC3.4
Cytogenetic Map14p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 41 11 8
Low 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC100271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000003552   ⟹   ENSRNOP00000003552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1444,413,636 - 44,457,239 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099960   ⟹   ENSRNOP00000085533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1442,783,332 - 42,829,760 (+)Ensembl
RefSeq Acc Id: NM_001037792   ⟹   NP_001032881
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,137,009 - 43,180,617 (+)NCBI
mRatBN7.21442,783,361 - 42,826,959 (+)NCBI
Rnor_6.01444,413,636 - 44,457,241 (+)NCBI
Rnor_5.01444,233,183 - 44,279,597 (+)NCBI
RGSC_v3.41445,477,213 - 45,520,785 (+)RGD
Celera1441,934,308 - 41,977,957 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250961   ⟹   XP_006251023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,143,828 - 43,180,622 (+)NCBI
mRatBN7.21442,790,364 - 42,829,762 (+)NCBI
Rnor_6.01444,420,451 - 44,460,044 (+)NCBI
Rnor_5.01444,233,183 - 44,279,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039092247   ⟹   XP_038948175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,137,232 - 43,180,622 (+)NCBI
mRatBN7.21442,783,697 - 42,829,762 (+)NCBI
RefSeq Acc Id: XM_039092248   ⟹   XP_038948176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,137,633 - 43,180,622 (+)NCBI
mRatBN7.21442,783,992 - 42,829,762 (+)NCBI
RefSeq Acc Id: XM_039092249   ⟹   XP_038948177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,137,835 - 43,180,622 (+)NCBI
mRatBN7.21442,784,189 - 42,829,762 (+)NCBI
RefSeq Acc Id: XM_039092250   ⟹   XP_038948178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,137,394 - 43,180,622 (+)NCBI
mRatBN7.21442,783,767 - 42,829,762 (+)NCBI
RefSeq Acc Id: XM_063273434   ⟹   XP_063129504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,136,960 - 43,180,622 (+)NCBI
RefSeq Acc Id: XM_063273436   ⟹   XP_063129506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,136,754 - 43,180,622 (+)NCBI
RefSeq Acc Id: XM_063273437   ⟹   XP_063129507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,143,994 - 43,180,622 (+)NCBI
RefSeq Acc Id: XM_063273438   ⟹   XP_063129508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,137,232 - 43,180,622 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001032881   ⟸   NM_001037792
- UniProtKB: Q498C7 (UniProtKB/Swiss-Prot),   A6JDD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251023   ⟸   XM_006250961
- Peptide Label: isoform X1
- UniProtKB: Q498C7 (UniProtKB/Swiss-Prot),   A6JDD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000003552   ⟸   ENSRNOT00000003552
RefSeq Acc Id: XP_038948175   ⟸   XM_039092247
- Peptide Label: isoform X1
- UniProtKB: Q498C7 (UniProtKB/Swiss-Prot),   A6JDD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948178   ⟸   XM_039092250
- Peptide Label: isoform X1
- UniProtKB: Q498C7 (UniProtKB/Swiss-Prot),   A6JDD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948176   ⟸   XM_039092248
- Peptide Label: isoform X1
- UniProtKB: Q498C7 (UniProtKB/Swiss-Prot),   A6JDD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948177   ⟸   XM_039092249
- Peptide Label: isoform X1
- UniProtKB: Q498C7 (UniProtKB/Swiss-Prot),   A6JDD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000085533   ⟸   ENSRNOT00000099960
RefSeq Acc Id: XP_063129506   ⟸   XM_063273436
- Peptide Label: isoform X1
- UniProtKB: Q498C7 (UniProtKB/Swiss-Prot),   A6JDD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129504   ⟸   XM_063273434
- Peptide Label: isoform X1
- UniProtKB: Q498C7 (UniProtKB/Swiss-Prot),   A6JDD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129508   ⟸   XM_063273438
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129507   ⟸   XM_063273437
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q498C7-F1-model_v2 AlphaFold Q498C7 1-99 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699313
Promoter ID:EPDNEW_R9838
Type:initiation region
Name:Smim14_1
Description:small integral membrane protein 14
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01444,413,653 - 44,413,713EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311122 AgrOrtholog
BioCyc Gene G2FUF-15747 BioCyc
Ensembl Genes ENSRNOG00000002553 Ensembl
  ENSRNOG00000066377 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055017975 UniProtKB/Swiss-Prot
  ENSRNOG00060015914 UniProtKB/Swiss-Prot
  ENSRNOG00065013407 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000099960 ENTREZGENE
  ENSRNOT00000099960.1 UniProtKB/Swiss-Prot
  ENSRNOT00055030443 UniProtKB/Swiss-Prot
  ENSRNOT00060027258 UniProtKB/Swiss-Prot
  ENSRNOT00065022054 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7445571 IMAGE-MGC_LOAD
InterPro Uncharacterised_CD034/YQF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:364154 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:116420 IMAGE-MGC_LOAD
NCBI Gene 364154 ENTREZGENE
PANTHER PTHR31019 UniProtKB/Swiss-Prot
  SMALL INTEGRAL MEMBRANE PROTEIN 14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DUF2615 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Smim14 PhenoGen
RatGTEx ENSRNOG00000002553 RatGTEx
  ENSRNOG00000066377 RatGTEx
  ENSRNOG00055017975 RatGTEx
  ENSRNOG00060015914 RatGTEx
  ENSRNOG00065013407 RatGTEx
UniProt A6JDD7 ENTREZGENE, UniProtKB/TrEMBL
  Q498C7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-18 Smim14  small integral membrane protein 14  RGD1311122  similar to RIKEN cDNA 1110003E01  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311122  similar to RIKEN cDNA 1110003E01  RGD1311122_predicted  similar to RIKEN cDNA 1110003E01 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311122_predicted  similar to RIKEN cDNA 1110003E01 (predicted)  LOC364154_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC364154_predicted  similar to RIKEN cDNA 1110003E01 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL