Clip4 (CAP-GLY domain containing linker protein family, member 4) - Rat Genome Database

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Gene: Clip4 (CAP-GLY domain containing linker protein family, member 4) Rattus norvegicus
Analyze
Symbol: Clip4
Name: CAP-GLY domain containing linker protein family, member 4
RGD ID: 1311049
Description: Orthologous to human CLIP4 (CAP-Gly domain containing linker protein family member 4); INTERACTS WITH 3,4-methylenedioxymethamphetamine; acrylamide; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CAP-Gly domain-containing linker protein 4; LOC120093199; LOC120103484; LOC298801; restin-like 2; restin-like protein 2; RGD1311049; Rsnl2; similar to RIKEN cDNA 4833417L20; uncharacterized LOC120093199; uncharacterized LOC120103484
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8629,349,245 - 29,351,890 (-)NCBIGRCr8GRCr8GRCr8
GRCr8629,359,628 - 29,449,365 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl629,348,918 - 29,449,271 (-)EnsemblGRCr8
mRatBN7.2623,616,280 - 23,697,625 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2623,597,729 - 23,601,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2623,718,580 - 23,729,231 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl623,616,281 - 23,677,874 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx623,947,453 - 24,028,759 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0624,263,324 - 24,344,633 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0623,751,181 - 23,832,692 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0623,222,020 - 23,316,962 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl623,222,021 - 23,316,962 (-)Ensemblrn6Rnor6.0
Rnor_5.0633,101,206 - 33,183,386 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4623,749,168 - 23,832,427 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera623,147,858 - 23,228,522 (-)NCBICelera
RGSC_v3.1623,752,122 - 23,835,380 (-)NCBI
Cytogenetic Map6q14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
artesunate  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cantharidin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (ISO)
diisononyl phthalate  (ISO)
diquat  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
isoprenaline  (ISO)
lead(0)  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorononanoic acid  (ISO)
phenylmercury acetate  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetraphene  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Clip4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8629,349,245 - 29,351,890 (-)NCBIGRCr8GRCr8GRCr8
GRCr8629,359,628 - 29,449,365 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl629,348,918 - 29,449,271 (-)EnsemblGRCr8
mRatBN7.2623,616,280 - 23,697,625 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2623,597,729 - 23,601,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2623,718,580 - 23,729,231 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl623,616,281 - 23,677,874 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx623,947,453 - 24,028,759 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0624,263,324 - 24,344,633 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0623,751,181 - 23,832,692 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0623,222,020 - 23,316,962 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl623,222,021 - 23,316,962 (-)Ensemblrn6Rnor6.0
Rnor_5.0633,101,206 - 33,183,386 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4623,749,168 - 23,832,427 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera623,147,858 - 23,228,522 (-)NCBICelera
RGSC_v3.1623,752,122 - 23,835,380 (-)NCBI
Cytogenetic Map6q14NCBI
CLIP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38229,097,726 - 29,183,808 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl229,095,545 - 29,199,777 (+)Ensemblhg38GRCh38
GRCh37229,320,592 - 29,406,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36229,191,822 - 29,260,180 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34229,249,968 - 29,318,324NCBI
Celera229,182,715 - 29,251,081 (+)NCBICelera
Cytogenetic Map2p23.2NCBI
HuRef229,085,263 - 29,147,683 (+)NCBIHuRef
CHM1_1229,268,549 - 29,336,915 (+)NCBICHM1_1
T2T-CHM13v2.0229,141,179 - 29,227,263 (+)NCBIT2T-CHM13v2.0
Clip4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391772,076,674 - 72,171,205 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1772,075,468 - 72,171,268 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381771,769,674 - 71,864,210 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1771,768,473 - 71,864,273 (+)Ensemblmm10GRCm38
MGSCv371772,119,031 - 72,207,691 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361771,686,804 - 71,761,624 (+)NCBIMGSCv36mm8
Celera1776,045,870 - 76,131,398 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1742.9NCBI
Clip4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546910,964,847 - 11,045,365 (+)Ensembl
ChiLan1.0NW_00495546910,966,830 - 11,042,494 (+)NCBIChiLan1.0ChiLan1.0
CLIP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21297,325,114 - 97,393,515 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A97,329,087 - 97,397,482 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A29,120,679 - 29,189,021 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A29,180,601 - 29,267,084 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A29,180,601 - 29,272,876 (+)EnsemblpanPan2panpan1.1
CLIP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11722,921,455 - 23,007,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1722,921,488 - 23,011,839 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1722,715,679 - 22,815,543 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01723,484,033 - 23,583,967 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1723,463,573 - 23,595,133 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11722,783,370 - 22,883,295 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01722,835,888 - 22,945,736 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01722,952,028 - 23,051,925 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Clip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629267,123,526 - 67,162,207 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364933,679,298 - 3,733,175 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364933,677,358 - 3,755,465 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLIP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3110,111,153 - 110,181,127 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13110,111,015 - 110,181,144 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23116,931,705 - 117,021,159 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLIP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11478,415,593 - 78,504,484 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1478,414,487 - 78,478,938 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604533,592,548 - 33,710,530 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clip4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473811,012,123 - 11,086,527 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473810,977,701 - 11,086,997 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Clip4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1721,362,170 - 21,432,437 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Clip4
446 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:38
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000065421
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
8693645Alc31Alcohol consumption QTL 313.70.038drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)62328466429732046Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)62228825732981219Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat

Markers in Region
D6Got15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2623,680,060 - 23,680,221 (+)MAPPERmRatBN7.2
Rnor_6.0623,299,388 - 23,299,549NCBIRnor6.0
Rnor_5.0633,165,812 - 33,165,973UniSTSRnor5.0
RGSC_v3.4623,814,851 - 23,815,014RGDRGSC3.4
RGSC_v3.4623,814,852 - 23,815,014UniSTSRGSC3.4
Celera623,210,973 - 23,211,135UniSTS
RGSC_v3.1623,817,804 - 23,817,967RGD
RH 2.0 Map6186.4RGD
Cytogenetic Map6q13UniSTS
BF393672  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2623,687,147 - 23,687,256 (+)MAPPERmRatBN7.2
mRatBN7.2623,718,667 - 23,718,776 (+)MAPPERmRatBN7.2
Rnor_6.0623,306,480 - 23,306,588NCBIRnor6.0
Rnor_5.0633,172,904 - 33,173,012UniSTSRnor5.0
RGSC_v3.4623,821,945 - 23,822,053UniSTSRGSC3.4
Celera623,218,040 - 23,218,148UniSTS
Cytogenetic Map6q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 12 76 162 81 80 49 42 49 6 289 152 12 138 71 104 31 24 24

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC081910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000065421   ⟹   ENSRNOP00000063078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl623,222,021 - 23,316,962 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085708   ⟹   ENSRNOP00000073802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl629,367,967 - 29,449,271 (-)Ensembl
mRatBN7.2 Ensembl623,616,281 - 23,677,874 (-)Ensembl
Rnor_6.0 Ensembl623,222,216 - 23,291,568 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130254   ⟹   ENSRNOP00000105029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl629,360,672 - 29,449,271 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000144084   ⟹   ENSRNOP00000111998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl629,360,469 - 29,449,271 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170399   ⟹   ENSRNOP00000112322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl629,348,918 - 29,449,271 (-)Ensembl
RefSeq Acc Id: NM_001013942   ⟹   NP_001013964
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8629,367,966 - 29,449,271 (-)NCBI
mRatBN7.2623,616,280 - 23,697,625 (-)NCBI
Rnor_6.0623,222,020 - 23,316,962 (-)NCBI
Rnor_5.0633,101,206 - 33,183,386 (-)NCBI
RGSC_v3.4623,749,168 - 23,832,427 (-)RGD
Celera623,147,858 - 23,228,522 (-)RGD
Sequence:
RefSeq Acc Id: XM_063261626   ⟹   XP_063117696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8629,359,628 - 29,449,365 (-)NCBI
RefSeq Acc Id: XM_063261627   ⟹   XP_063117697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8629,359,628 - 29,436,145 (-)NCBI
RefSeq Acc Id: XM_063261628   ⟹   XP_063117698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8629,359,628 - 29,436,308 (-)NCBI
RefSeq Acc Id: XR_010052058
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8629,376,758 - 29,449,365 (-)NCBI
RefSeq Acc Id: XR_010052206
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8629,349,245 - 29,351,890 (-)NCBI
RefSeq Acc Id: NP_001013964   ⟸   NM_001013942
- UniProtKB: Q66HD5 (UniProtKB/Swiss-Prot),   A0A0G2K6G4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063078   ⟸   ENSRNOT00000065421
Ensembl Acc Id: ENSRNOP00000073802   ⟸   ENSRNOT00000085708
RefSeq Acc Id: XP_063117696   ⟸   XM_063261626
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063117698   ⟸   XM_063261628
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063117697   ⟸   XM_063261627
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000111998   ⟸   ENSRNOT00000144084
Ensembl Acc Id: ENSRNOP00000105029   ⟸   ENSRNOT00000130254
Ensembl Acc Id: ENSRNOP00000112322   ⟸   ENSRNOT00000170399
Protein Domains
CAP-Gly

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HD5-F1-model_v2 AlphaFold Q66HD5 1-599 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694430
Promoter ID:EPDNEW_R4941
Type:multiple initiation site
Name:Clip4_1
Description:CAP-GLY domain containing linker protein family, member 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0623,316,988 - 23,317,048EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311049 AgrOrtholog
BioCyc Gene G2FUF-38393 BioCyc
Ensembl Genes ENSRNOG00000008806 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000085708 ENTREZGENE
  ENSRNOT00000144084 ENTREZGENE
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot
  2.30.30.190 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7111548 IMAGE-MGC_LOAD
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot
  CAP-Gly_dom_sf UniProtKB/Swiss-Prot
  CAP-Gly_domain UniProtKB/Swiss-Prot
KEGG Report rno:298801 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93846 IMAGE-MGC_LOAD
NCBI Gene 298801 ENTREZGENE
PANTHER DYNACTIN 1-RELATED MICROTUBULE-BINDING UniProtKB/Swiss-Prot
  PTHR18916:SF32 UniProtKB/Swiss-Prot
Pfam Ank_2 UniProtKB/Swiss-Prot
  CAP_GLY UniProtKB/Swiss-Prot
PhenoGen Clip4 PhenoGen
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
  ANK_REPEAT UniProtKB/Swiss-Prot
  CAP_GLY_1 UniProtKB/Swiss-Prot
  CAP_GLY_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008806 RatGTEx
SMART ANK UniProtKB/Swiss-Prot
  CAP_GLY UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot
  SSF74924 UniProtKB/Swiss-Prot
UniProt A0A0G2K6G4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L5G6_RAT UniProtKB/TrEMBL
  A0ABK0M3V3_RAT UniProtKB/TrEMBL
  A0ABK0M8E9_RAT UniProtKB/TrEMBL
  CLIP4_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-18 Clip4  CAP-GLY domain containing linker protein family, member 4  LOC120093199  uncharacterized LOC120093199  Data Merged 737654 PROVISIONAL
2024-03-18 Clip4  CAP-GLY domain containing linker protein family, member 4  LOC120103484  uncharacterized LOC120103484  Data Merged 737654 PROVISIONAL
2021-01-27 LOC120103484  uncharacterized LOC120103484      Symbol and Name status set to provisional 70820 PROVISIONAL
2021-01-27 LOC120093199  uncharacterized LOC120093199      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-07 Clip4  CAP-GLY domain containing linker protein family, member 4  Rsnl2  restin-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Rsnl2  restin-like 2  RGD1311049  similar to RIKEN cDNA 4833417L20  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1311049  similar to RIKEN cDNA 4833417L20  RGD1311049_predicted  similar to RIKEN cDNA 4833417L20 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311049_predicted  similar to RIKEN cDNA 4833417L20 (predicted)  LOC298801_predicted  similar to RIKEN cDNA 4833417L20 (predicted)  Symbol and Name status set to approved 1331353 APPROVED
2005-01-20 RGD1311049_predicted  similar to RIKEN cDNA 4833417L20 (predicted)  LOC298801_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC298801_predicted  similar to RIKEN cDNA 4833417L20 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL