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Gene: Arid5a (AT-rich interaction domain 5A) Rattus norvegicus

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Symbol:

Arid5a

Name:

AT-rich interaction domain 5A

RGD ID:

1311041

Description:

Predicted to enable several functions, including RNA binding activity; nuclear receptor binding activity; and transcription corepressor activity. Predicted to be involved in several processes, including cellular response to estrogen stimulus; positive regulation of T-helper 17 type immune response; and positive regulation of gene expression. Predicted to act upstream of or within chondrocyte differentiation and positive regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human ARID5A (AT-rich interaction domain 5A); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AT rich interactive domain 5A (Mrf1 like); AT-rich interactive domain-containing protein 5A; LOC316327; MGC124686

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARID5A (AT-rich interaction domain 5A)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Arid5a (AT-rich interaction domain 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arid5a (AT-rich interaction domain 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARID5A (AT-rich interaction domain 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARID5A (AT-rich interaction domain 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arid5a (AT-rich interaction domain 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARID5A (AT-rich interaction domain 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARID5A (AT-rich interaction domain 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arid5a (AT-rich interaction domain 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Arid5a (AT-rich interaction domain 5A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TCP1 (t-complex 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ARID5A (AT-rich interaction domain 5A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arid5a (AT-rich interaction domain 5A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arid5a (AT rich interactive domain 5A (MRF1-like))	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arid6 (AT-rich interaction domain 6)	Alliance	DIOPT (OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	SWI1	Alliance	DIOPT (OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	arid5b	Alliance	DIOPT (InParanoid\|OrthoInspector)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,030,513 - 46,058,729 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	46,030,548 - 46,045,363 (+)	Ensembl				GRCr8
mRatBN7.2	9	38,534,612 - 38,549,467 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	38,534,590 - 38,547,597 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	47,046,170 - 47,061,006 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	52,153,491 - 52,168,275 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	50,435,379 - 50,450,163 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	42,871,907 - 42,886,725 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	42,871,950 - 42,884,855 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	42,526,010 - 42,540,829 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	35,239,813 - 35,244,452 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	36,310,858 - 36,315,497 (+)	NCBI		Celera
RGSC_v3.1	9	35,208,479 - 35,245,017 (+)	NCBI
Cytogenetic Map	9	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

15-acetyldeoxynivalenol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

acrylamide (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

alpha-Zearalanol (EXP)

amiodarone (ISO)

aristolochic acid A (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

chlorpyrifos (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

diclofenac (ISO)

dioxygen (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fluoranthene (ISO)

FR900359 (ISO)

gentamycin (EXP)

graphite (EXP)

indometacin (ISO)

melphalan (ISO)

menadione (ISO)

methoxychlor (EXP)

methylmercury chloride (EXP)

mono(2-ethylhexyl) phthalate (ISO)

Muraglitazar (EXP)

N-methyl-4-phenylpyridinium (ISO)

naphthalene (ISO)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

raloxifene (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

Tesaglitazar (EXP)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

Triptolide (ISO)

triptonide (ISO)

troglitazone (EXP)

trovafloxacin (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to estrogen stimulus (ISO)

cellular response to lipopolysaccharide (ISO)

chondrocyte differentiation (ISO)

DNA-templated transcription (IEA)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of 3'-UTR-mediated mRNA stabilization (ISO)

positive regulation of interleukin-17 production (ISO)

positive regulation of interleukin-6 production (ISO)

positive regulation of protein acetylation (ISO)

positive regulation of T-helper 1 cell cytokine production (ISO)

positive regulation of T-helper 17 type immune response (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

positive regulation of tumor necrosis factor production (ISO)

positive regulation of type II interferon production (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (IBA,IEA,ISO)

transcription regulator complex (ISO)

Molecular Function

chromatin binding (ISO)

DNA binding (IEA)

identical protein binding (ISO)

mRNA 3'-UTR AU-rich region binding (ISO)

nuclear androgen receptor binding (ISO)

nuclear estrogen receptor binding (ISO)

nuclear retinoid X receptor binding (ISO)

nuclear thyroid hormone receptor binding (ISO)

protein binding (ISO)

RNA stem-loop binding (ISO)

sequence-specific DNA binding (ISO)

transcription cis-regulatory region binding (IBA)

transcription corepressor activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15640446	PMID:15941852	PMID:21346191	PMID:27022145	PMID:27671645

Genomics

Comparative Map Data

Arid5a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,030,513 - 46,058,729 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	46,030,548 - 46,045,363 (+)	Ensembl				GRCr8
mRatBN7.2	9	38,534,612 - 38,549,467 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	38,534,590 - 38,547,597 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	47,046,170 - 47,061,006 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	52,153,491 - 52,168,275 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	50,435,379 - 50,450,163 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	42,871,907 - 42,886,725 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	42,871,950 - 42,884,855 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	42,526,010 - 42,540,829 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	35,239,813 - 35,244,452 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	36,310,858 - 36,315,497 (+)	NCBI		Celera
RGSC_v3.1	9	35,208,479 - 35,245,017 (+)	NCBI
Cytogenetic Map	9	q21	NCBI

ARID5A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	96,536,752 - 96,552,638 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	96,536,717 - 96,552,638 (+)	Ensembl			hg38	GRCh38
GRCh37	2	97,202,489 - 97,218,375 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	96,566,191 - 96,582,098 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	91,643,676 - 91,659,583 (+)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	91,163,667 - 91,180,142 (+)	NCBI		HuRef
CHM1_1	2	97,207,299 - 97,223,202 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	97,043,371 - 97,059,257 (+)	NCBI		T2T-CHM13v2.0

Arid5a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	36,346,814 - 36,363,117 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	36,346,814 - 36,363,110 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	36,307,733 - 36,324,037 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	36,307,733 - 36,324,029 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	36,364,578 - 36,380,874 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	36,252,300 - 36,267,521 (+)	NCBI		MGSCv36	mm8
Celera	1	36,094,498 - 36,110,796 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	15.2	NCBI

Arid5a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	3,950,750 - 3,965,750 (+)	Ensembl
ChiLan1.0	NW_004955470	3,951,010 - 3,964,391 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARID5A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	31,755,836 - 31,771,847 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	31,758,599 - 31,774,604 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	102,762,076 - 102,778,072 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	97,459,684 - 97,475,655 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	97,459,690 - 97,475,651 (+)	Ensembl			panPan2	panpan1.1

ARID5A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	34,320,791 - 34,333,660 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	34,321,177 - 34,333,621 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	34,091,654 - 34,104,579 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	35,091,079 - 35,104,010 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	35,091,084 - 35,104,106 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	34,215,957 - 34,228,876 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	34,278,026 - 34,290,944 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	34,496,157 - 34,509,082 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Arid5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	83,279,214 - 83,291,438 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	537,168 - 546,017 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	539,150 - 545,021 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARID5A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	46,701,632 - 46,714,113 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	46,701,628 - 46,714,121 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	48,848,384 - 48,860,871 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARID5A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	876,508 - 892,267 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	876,562 - 892,166 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	168,304,534 - 168,320,367 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arid5a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	2,491,156 - 2,506,110 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	2,491,162 - 2,504,580 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arid5a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	112,525,147 - 112,538,065 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arid5a
187 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	156
Count of miRNA genes:	111
Interacting mature miRNAs:	137
Transcripts:	ENSRNOT00000067688
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	31250432	68875676	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	31250432	65651574	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	31456061	57460683	Rat

Markers in Region

RH130730

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	38,546,754 - 38,546,962 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	42,884,013 - 42,884,220	NCBI	Rnor6.0
Rnor_5.0	9	42,538,117 - 42,538,324	UniSTS	Rnor5.0
RGSC_v3.4	9	35,243,609 - 35,243,816	UniSTS	RGSC3.4
Celera	9	36,314,654 - 36,314,861	UniSTS
RH 3.4 Map	9	359.2	UniSTS
Cytogenetic Map	9	q21	UniSTS

RH138587

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	38,547,392 - 38,547,529 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	42,884,651 - 42,884,787	NCBI	Rnor6.0
Rnor_5.0	9	42,538,755 - 42,538,891	UniSTS	Rnor5.0
RGSC_v3.4	9	35,244,247 - 35,244,383	UniSTS	RGSC3.4
Celera	9	36,315,292 - 36,315,428	UniSTS
RH 3.4 Map	9	359.2	UniSTS
Cytogenetic Map	9	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	92	59	6	356	192	11	139	81	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC105777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067688 ⟹ ENSRNOP00000060873

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	46,030,579 - 46,045,363 (+)	Ensembl
mRatBN7.2 Ensembl	9	38,543,990 - 38,547,597 (+)	Ensembl
Rnor_6.0 Ensembl	9	42,880,217 - 42,884,855 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089673 ⟹ ENSRNOP00000071542

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	46,030,548 - 46,045,363 (+)	Ensembl
mRatBN7.2 Ensembl	9	38,534,590 - 38,547,064 (+)	Ensembl
Rnor_6.0 Ensembl	9	42,871,950 - 42,884,204 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099627 ⟹ ENSRNOP00000092959

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	38,542,670 - 38,547,064 (+)	Ensembl

RefSeq Acc Id:

NM_001034934 ⟹ NP_001030106

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,579 - 46,045,363 (+)	NCBI
mRatBN7.2	9	38,534,683 - 38,549,467 (+)	NCBI
Rnor_6.0	9	42,880,217 - 42,884,856 (+)	NCBI
Rnor_5.0	9	42,526,010 - 42,540,829 (+)	NCBI
RGSC_v3.4	9	35,239,813 - 35,244,452 (+)	RGD
Celera	9	36,310,858 - 36,315,497 (+)	RGD

Sequence:

show sequence

CAAGCCTCAAGATGAGCAGAGCAAGAGCCAGAGCCCCATCCAGCTTGAGTTAACCTGTGGAAGA
TCTACAAGGCAGTGGAGAAGCTGGGGGCCTATGAGCTGGTGACAGGCCGCCGCCTCTGGAAGAA
CGTGTATGATGAACTTGGGGGTAGCCCGGGCAGCACCAGTGCGGCTACATGCACACGCCGCCAC
TATGAGAGGCTGGTCCTCCCATATGTGCGGCACCTGAAGGGAGAGGACGACAAACCACTGCCCC
CTACCAAGCCCAGGAAGCAATACAAGATGGCCAAGGAGCTGAGGGGAGATGATGGGGCCACTGA
GAAGCTGAAGAAGGCCAAGGACTCAGAGGAGAGGCAGGCGGACCAGACCACATCAGAAAAGACC
AAATCAGATGCCCCTGGCCAGACACAGCTTCCCAGACAAGGATCCTCAAGGGATAGCACGGAAC
AGCTGGGCCCAGTATCTGGGTCTTCTCCACCGTTCCTGGGTGCTAATAGTTGTCCTGAGGCCTA
CAAGCGGCTTTTGGCGAGCTTCTACTGCAAAGGGGCGCATGGTATCATGTCACCACTGGCCAAA
AAGAAACTCCTGGCTCAGGTCAGCAAGGCAGAGGCCTTGCAGTGCCAAGAAGAGGGCTGTCGCC
ACGGAGCAAGGAGCCCCAACAAGGACCTTCAAGAAAGTTCCCAGAACCCAAGAGGGCTGGCTGA
GAACTCTGAACACCAACTAACCCCCCCGGAAGGATTGCGGGCCCCTGGTGGCAGCACTGGTGTG
GAGGCACAGGTGGGCCCCTGCCCTACAGCCCCCACATTCTTAGGCCGTTTTCATGCGTACCCCA
CCGAGGTGCTGAAGCCCGTCAGCCAGCACCCCAGGGACTTCTTCTCCAGCCTTAAAGACAGGGT
GCTGTTGGGACCACCTGGTAAAGAGGAAGGGCTGACAGCCAAAGAGTCCCAGCTGGTATGGGGT
GGGGATGCCAACCGCCCCTCTGCATTCCACAAAGGCAGCACAAGGAAAAGAAGTTTCTATCCCA
AGCCCAAAGCCTGCTGGGTGTCCCCCATGGCCAAGGTCCCTGCTGAGAGTCCCGGAGCCCCACT
CCCCCATCCCAGGAGCCCAGGTCTTAGCAAGAAGCGCGGCTTGGAAGAAGAGGGATACACTCAT
GGTGGCAAGAAACTGAAGGCGGTGTCTCCCTTTCTGAAGGAGGTGGATGCCAGGGAGAGTGAGG
GCAAGCCTGCAGCCCCTGGCTTGGCTGTATCCTGTCTACTGGGCCCAGCCCTGGGGCCCACTCC
TCCAGAGTCCTACAGGGGCACCATGCTGCGGTGTCCTCTGAACTTCACCAGTAGTGCAGACCCT
CTGAAGGGCCAGGCCTCACTGCCCTTCAGCCCCCTGGTCATTCCTACTTTCCCAGCCCATCTCC
TGGCTACAACAGGCCCCTCGCCTATGGCTACCAGCCTGATGCATTTCCCTCCCACGCCATATGA
CACTGTCCTTCGCAACAGACTGGGTCCAGCTTCGTCTGCCTGGCACGTGCCCCCCGTCACAACC
TATGCGGCACCCCACTTCTTCCACCTCAACACCAAACTGTAGGGCCTGAGTCTATCCTGCTATG
CCTCGGAGATGGGGCCTCAAATGGGCAGATGCTGCTGCGCATCTCAGGCCAGACTAGCCTCCCC
GAGTCTGACTCCCTCGCACAGACAGGAGGAGGCAGTGGGCTTGTCTGAATGAAGCAGCCTGTGC
CCAAAGCCCAGGGACCAAGTTGTGGTAAGATCATGAAAGTACCTGAGCTGGTGTTCTCTTTCCA
CAGAGGCCAAGAGGTCTGAGAGGCTGGGGAGCTAAATTATCAGCTCAAGGCATCCAGGTTGGCC
ATGAAAGACCCAATAAAAAGACACTGGTGTGATTGCACTCAGCCCAAGGGTATACAGCATTGGA
CGTTTGCAAGGGGAGGTGAGGCAGGAGCGAGCGTGTAGGCGTGGCCATCAGTGTGGGAGCAAAG
ATGAAACAAAGCCACTCTGGCCTGGACGCTGCCACCCCACTGGAGGGTAGGGCCAGAGCCAAAC
CGGGCCTCTGTGCGCAGATGAACAGCCGAGATTCCTTTCGCTCCAGCCTCAGGACACTCGACTG
TTGAGGTTGCCGTGGTGCAAAGCCCAGAGCACACTGGTGACCTGTGAGACAAGTGGGAGGGGCT
GTGTCATTGCAACCCTCTGAGCTGAGCCAGTCCCAGAAGGCCTTGAGTCTTTCAGTGAAGGGCT
TGCTCTGAGAGACCTTGCTGTGTTGCTCATGTTAATCTGGGACCCCTGACCTAAAGAAATCCAA
CTATGGCCTTCTCAGTAGCAGAAGCTACAGGTGTGAACCTCTGTACCCGTGAAGAGGGGATTTG
TGGGTGTTCGTATAAAACCCAAGTGAGTCTGTCCTATTGGTGGGCAGACCTGTGAGCCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001399179 ⟹ NP_001386108

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,579 - 46,045,363 (+)	NCBI
mRatBN7.2	9	38,534,683 - 38,549,467 (+)	NCBI

RefSeq Acc Id:

XM_006244807 ⟹ XP_006244869

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,527 - 46,058,729 (+)	NCBI
mRatBN7.2	9	38,534,612 - 38,549,467 (+)	NCBI
Rnor_6.0	9	42,871,907 - 42,886,725 (+)	NCBI
Rnor_5.0	9	42,526,010 - 42,540,829 (+)	NCBI

Sequence:

show sequence

GGGGAGAGGAGACCGTCGAGCGGCGCAGCGAGCCAGTCGCGCCGAGAGCGCTGGGAGCGGACGG
CTGTGCGCATCGAGGGTCTCCGGACGGCGACGCACGCTCTCGCTGGGCAATGGCACCTTCGGCT
AAGGGGAAAGCGGAGCAATCAGAGGAAGGTGACCTCCAGGAGCCCCCTGTGTCCCCCAAGCCTC
AAGATGAGCAGAGCAAGAGCCAGAGCCCCATCCAGCTTGAGGACTCCCCTAAGGCAGGTGGGGA
GCAGGAGGAAGAACAGGCCTTCCTGGTCAGCCTCTACAAGTTCATGAAGGAGCGACACACGCCC
ATCGAGAGGGTGCCCCATCTTGGCTTCAAGCAGATTAACCTGTGGAAGATCTACAAGGCAGTGG
AGAAGCTGGGGGCCTATGAGCTGGTGACAGGCCGCCGCCTCTGGAAGAACGTGTATGATGAACT
TGGGGGTAGCCCGGGCAGCACCAGTGCGGCTACATGCACACGCCGCCACTATGAGAGGCTGGTC
CTCCCATATGTGCGGCACCTGAAGGGAGAGGACGACAAACCACTGCCCCCTACCAAGCCCAGGA
AGCAATACAAGATGGCCAAGGAGCTGAGGGGAGATGATGGGGCCACTGAGAAGCTGAAGAAGGC
CAAGGACTCAGAGGAGAGGCAGGCGGACCAGACCACATCAGAAAAGACCAAATCAGATGCCCCT
GGCCAGACACAGCTTCCCAGACAAGGATCCTCAAGGGATAGCACGGAACAGCTGGGCCCAGTAT
CTGGGTCTTCTCCACCGTTCCTGGGTGCTAATAGCTGTCCTGAGGCCTACAAGCGGCTTTTGGC
GAGCTTCTACTGCAAAGGGGCGCATGGTATCATGTCACCACTGGCCAAAAAGAAACTCCTGGCT
CAGGTCAGCAAGGCAGAGGCCTTGCAGTGCCAAGAAGAGGGCTGTCGCCACGGAGCAAGGAGCC
CCAACAAGGACCTTCAAGAAAGTTCCCAGAACCCAAGAGGGCTGGCTGAGAACTCTGAACACCA
ACTAACCCCCCCGGAAGGATTGCGGGCCCCTGGTGGCAGCACTGGTGTGGAGGCACAGGTGGGC
CCCTGCCCTACAGCCCCCACATTCTTAGGCCGTTTTCATGCGTACCCCACCGAGGTGCTGAAGC
CCGTCAGCCAGCACCCCAGGGACTTCTTCTCCAGCCTTAAAGACAGGGTGCTGTTGGGACCACC
TGGTAAAGAGGAAGGGCTGACAGCCAAAGAGTCCCAGCTGGTATGGGGTGGGGATGCCAACCGC
CCCTCTGCATTCCACAAAGGCAGCACAAGGAAAAGAAGTTTCTATCCCAAGCCCAAAGCCTGCT
GGGTGTCCCCCATGGCCAAGGTCCCTGCTGAGAGTCCCGGAGCCCCACTCCCCCATCCCAGGAG
CCCAGGTCTTAGCAAGAAGCGCGGCTTGGAAGAAGAGGGATACACTCATGGTGGCAAGAAACTG
AAGGCGGTGTCTCCCTTTCTGAAGGAGGTGGATGCCAGGGAGAGTGAGGGCAAGCCTGCAGCCC
CTGGCTTGGCTGTATCCTGTCTACTGGGCCCAGCCCTGGGGCCCACTCCTCCAGAGTCCTACAG
GGGCACCATGCTGCGGTGTCCTCTGAACTTCACCAGTAGTGCAGACCCTCTGAAGGGCCAGGCC
TCACTGCCCTTCAGCCCCCTGGTCATTCCTACTTTCCCAGCCCATCTCCTGGCTACAACAGGCC
CCTCGCCTATGGCTACCAGCCTGATGCATTTCCCTCCCACGCCATATGACACTGTCCTTCGCAA
CAGACTGGGTCCAGCTTCGTCTGCCTGGCACGTGCCCCCCGTCACAACCTATGCGGCACCCCAC
TTCTTCCACCTCAACACCAAACTGTAGGGCCTGAGTCTATCCTGCTATGCCTCGGAGATGGGGC
CTCTAATGGGCAGATGCTGCTGCGCATCTCAGGCCAGACTAGCCTCCCCGAGTCTGACTCCCTC
GCACAGACAGGAGGAGGCAGTGGGCTTGTCTGAATGAAGCAGCCTGTGCCCAAAGCCCAGGGAC
CAAGTTGTGGTAAGATCATGAAAGTACCTGAGCTGGTGTTCTCTTTCCACAGAGGCCAAGAGGT
CTGAGAGGCTGGGGAGCTAAATTATCAGCTCAAGGCATCCAGGTTGGCCACGAAAGACCCAATA
AAAAGACACTGGTGTGATTGCACTCAGCCCAAGGGTATACAGCATTGGACGTTTGCAAGGGGAG
GTGAGGCAGGAGCGAGCGTGTAGGCGTGGCCATCAGTGTGGGAGCAAAGATGAAACAAAGCCAC
TCTGGCCTGGACGCTGCCACCCCACTGGAGGGTAGGGCCAGAGCCAAACCGGGCCTCTGTGCGC
AGATGAACAGCCGAGATTCCTTTCGCTCCAGCCTCAGGACACTCGACTGTTGAGGTTGCCGTGG
TGCAAAGCCCAGAGCACACTGGTGACCTGTGAGACAAGTGGGAGGGGCTGTGTCATTGCAACCC
TCTGAGCTGAGCCAGTCCCAGAAGGCCTTGAGTCTTTCAGTGAAGGGCTTGCTCTGAGAGACCT
TGCTGTGTTGCTCATGTTAATCTGGGACCCCTGACCTAAAGAAATCCAACTATGGCCTTCTCAG
TAGCAGAAGCTACAGGTGTGAACCTCTGTACCCGTGAAGAGGGGATTTGTGGGTGTTCGTATAA
AACCCAAGTGAGTCTGTCCTATTGGTGGGCAGACCTGTGAGCCCAGCTGCCTAGTGTTCCCAGT
CAGTAACCTGCCACATCCACACCTATTTTTCCTGTTCCACATACTGGACTTGGGGTGAGGGGTA
GAGGGAACCCATCTCTACCTGTGAATCTGTTGACAAGTCACAGTGATATTTAACTGTGGTTGCT
CCAGGCGCCCACACAGAAACCCTGTGGCTTGGCATCCACAACTACCTTAGATATGGCTTGCTCT
GCCAGTCCCAAGGAGACAGTACAGTTTCACACCATTCCTGGAAAGGCAGGGCCACCATGGCCCA
GAGATGCTAGGATGCCAGTGAACCAAGTCAACAGATGATTACTGACCTACATCATGGGAACTCA
CCCTCTCCCTGACCCCAGGCCATGGGTAGGAGGGCAAGGTTTTGTGGTCCCCTTAGTTCACAGG
AGGCATAGCCAAGGTCAGCAACAGGAAGTGCCATTGAGGATGTCTGACTCTGGGAAACGGTGGC
CAGGAAGGCAGCTGCCTGTGGAAGGGAGCTGGGACACAGGTGTCCTCCAGGACCAGGTAGCCAG
AGGGTGGAAGTCCCACTGATGCATCTTGCAACTTCCCGCCTTCTGTCTAGAGATACCAGGATTC
CAGTCTGAGTATGCAGATTAACAGCCCTGAGCTCCTGACAACCCCTCTGCACCCATGCGTTAGC
CCGTCTCTGAGCTTCTACAGCCCCATGAGGAAATGCCCTGGGTGTTGGGCTGCACACTGTGGAG
TCAGGACCCAGGAGAGACAGAGGGTAACTTTGTTTCTGGAGGGATCCCCTTCATCTACAAAGTA
ACGCTAGTCCGAGCCTGCTCAATGATGGCATGTGGCGGACAGCCTGGAACAGGAGATCGGTCCA
AGCTTCAGGAGCAGAGCCATCTGCTGGTTCATCAGGAGAATGCATGGCTGGGAGGGGAGGGTGT
GTTGGTTTCTGGGCCGGACTCTACCTCTGCTTCAGCAAAGACTCTAGAAATGAATGCAAATCAG
GCTTCCTGGGAAACCTAGGGATATTGCACCCATGTGCCAGTCTCACACAATCCTCCTTCCTTCT
GTGAATGAGAAAACCGAGCTCAGAGGCGACTCCAAACGCCATGGTGGCTGACAGCAGGTGCACA
CACCTTCCCGTGTTCACTTGTGTCCCTGACAGGTTACCCCAGAGGACCCACAGGACTGCAGAGT
TCTGGGCTTGTGTCCAGGGCATAACTTATTGTCAGAGTCTACTTCCAAATCATTTGTGACATCT
GTGCTAATGGTGGGAGAAGGCAGAGGCCACCCTGGTATTTGTGCAGACCCAACCCCTGCCCGTG
ATTCCAGCTCATCCCTGGAAACAGCCTAAGTGTGACGAGTTGGCTATTCAGCAGGAAATACCTC
ATTTGCCTTGGGTGTAAAAGCGTGCTGCCCCTTTAACTGCCTTAGGTGGCGTTGGTATACATTA
CACCGGCATCTCCCACACGAGGCAACTATCACCACCGCAGTTATTTGCTTGGTTTGGTTTTTCA
AGACAGGGTTTCTCTATGCAGCCCTGGCTGCCCTGGAATTTACTCTGTAGACCAGACTGGTCTC
TAATTAATAGAGACCCACCTGCCTCTGCCTCTACTTGGATTAAAGACGTGGGCCACCATGCCCA
GAGGCCACCTCAGCCAGCAACCACCAGAGTATTAAATAGAATGGCTGTCAATGTTCCTTGGCTA
CTGGAGGAACAGGGCAGCAAGCCTCTGAGGGAGTGGGGGGAGAGAGAGACAGAGAGAGGCCAGT
AGCCAGGGGGTCTGTGGGGCAGGGACAGAGGAAGCCAGAGGTGACTCAGGCTGTATTTGGAGCC
TTCTAGTCCAAGGGGCAGTTGGGCTTTTACATGAAATAAAAGAAAGATGGGAAGAGTG

hide sequence

RefSeq Acc Id:

XM_017596440 ⟹ XP_017451929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,532 - 46,058,729 (+)	NCBI
mRatBN7.2	9	38,534,639 - 38,549,467 (+)	NCBI
Rnor_6.0	9	42,872,034 - 42,886,725 (+)	NCBI

Sequence:

show sequence

GGCGGGCAGCGCCGGGGTCGGAGGGTTGGGGTCCCGGAGCGATCGTGGCCCTCGGGGCAACCCG
AGTGTCTGCGTGCTCTCTTCTCGTGGAAACTCGGGGCGGCCAGGGGCTTCCCAGGCGTTTATCT
CGAAACTCTCCTCTCGGGCTCTGGACTGAAATTCACTGAGCCGCCCACACTTCCTGCTGCGGTT
TCAATCTCGAGCTGCTCTGGGCCCATTTGTTGTGACAGCTGTCAGCAGCAGCTTCTCGGCCGCG
GGCCCCTCCCTGCCCCGTGCCAGCCCAGCGCTTCTCAGAAGCCGAGGCGCCCGGGCCGCGCGCA
GCGCTTCCCACTGCGGTCCCGATTCCTGAAAGTGACTGCGCGGGTTTTGAAGAAATTGCTCAAT
GCGCTTTGAAGAATCAACGGTTCCTCTTTTCTGCCGAGGGACATGGTTGTGGTTTGACGGTCAC
AAGCTTCAGATCCCCTGCTCCTCTCTTCTCTTTTCCTTTTCTTTCTGTTTCTTTTTTCTTTCCA
ACCCCCCGTAGGAAAGAGGCTCTCTTTTTACCCGTCTGGTTCTCTGAATTTCCCTCTCTTCCCT
TGGGTCTCTTCAAAGGGACAGAATAGTGGCCCTGGACAGGGGGTGTTTAGTGGAGGGAGGGCAG
AAACTTAGGCTGCCGGAGTGCGACGAACAAGTTTGGCTTTGCTCTCCTTGCCAACTGGGGGCAC
AACCTTGCAACCGCATCTGCGACCCTCCGCACTGCCCAGGCGTTGCCCCCTGACTGGGCTCACA
CCCCATACAGGCACAGTGGGGCCAACTCTGGGCTGGGAAGGCCTCAAATTCATCCCAAGTTTTG
CCGATCAGGCCAGCATCCCATAGTCTTATTTCAGAGGAGTGTAACAGGTGCTCTTTGCCCCGCC
CCGCGGGCACTATTGGGAATTGATGTAAATCTAGGGATCTCAGAGCCTAAAGAGGATGGATGCC
TGGGAAGGGAAGGGGAGGTGTTATCTAGAGGGTCTGGTCTCCACAGCAGTTAGAGTCCTAACTG
ACTGCTTGACCTAGAACTTGAAGTGACAGAGGCAGAATGGGCCTTAGGATTATATACTCCACCC
CCATCTTTTATTACAGAGAAACTGAGGCATAGAGATGGGCTCAGGTCTGACAGTGAGTGAGGAC
CAGGCTTCAAAGACTCCTTGCCCTTTCTCTTCTTTCTGGTAGCCTTCTGCTGCCCTGAGTGGGA
AGCTGAATGGTCTAGATTCCCCCTTGACCAGGATAGCAGGCACTGTGCTAGGGTGAGGAGAGGA
GGAGAAAGGAAAAGTGAGGTCTGAAATTTCCCTGTGTAGGGGTTCTAGTCTCCTGTTGAGTCAC
CCTCTGCAACTTGTTTCTGCATAGGTGGGGTGGGAAAACCGGAAATGATCCATATAGAGAGCTC
TGTCTTCACCAGACATACAGACAGAGGGTGGGGCCGTGAAGACTCAGCCCTTCCAGGATTAGGA
TCTCTTGGGCTATCTCAGGGCAGTGGGAGTCTAGCATCTTAAACCTGGTACCCCTATACTCCCC
TCTACCTTTCTGTACCCCCCAAGGGCTCTCAGCTTGTCTCTAGCCACTAACAGAGCTTGGCAGA
AGTGCTGAGGGTGGGCTGTGGCCAGTTCTGTGCCCTGGATCCTCAGACTCCTGTCTAGCTGTCC
TTAAGGCTGGCTCTTGGCAGGACACCTCCCCCCCCCCAAAAAAAGCCAAACTGCCTATTGGAGC
AAGCCCAAGGAGGAGAATGCCAGGCAGCCAGCTTCTGGGCCATGAAGTGGACTGACCGCTTCAA
AGGCTGTCTTTGTTTCCTCTCCAGAGCTTGAGCTAAGAGAAACTTAAGCCAACAACCTCAGGCG
AGCGGGCGGGACTGTGTCTACTGGTTGTTATTGAGGTTGCTGTTGCCGTTATTGACGTGCTGTT
CCCAGCCAGTGAGTTTTCATGAAAGGAAGTGTCACTTCCTTCCCATCACAAGAAGGGTGACTGG
GCAGCACCTTCGGCTAAGGGGAAAGCGGAGCAATCAGAGGAAGGTGACCTCCAGGAGCCCCCTG
TGTCCCCCAAGCCTCAAGATGAGCAGAGCAAGAGCCAGAGCCCCATCCAGCTTGAGTTAACCTG
TGGAAGATCTACAAGGCAGTGGAGAAGCTGGGGGCCTATGAGCTGGTGACAGGCCGCCGCCTCT
GGAAGAACGTGTATGATGAACTTGGGGGTAGCCCGGGCAGCACCAGTGCGGCTACATGCACACG
CCGCCACTATGAGAGGCTGGTCCTCCCATATGTGCGGCACCTGAAGGGAGAGGACGACAAACCA
CTGCCCCCTACCAAGCCCAGGAAGCAATACAAGATGGCCAAGGAGCTGAGGGGAGATGATGGGG
CCACTGAGAAGCTGAAGAAGGCCAAGGACTCAGAGGAGAGGCAGGCGGACCAGACCACATCAGA
AAAGACCAAATCAGATGCCCCTGGCCAGACACAGCTTCCCAGACAAGGATCCTCAAGGGATAGC
ACGGAACAGCTGGGCCCAGTATCTGGGTCTTCTCCACCGTTCCTGGGTGCTAATAGCTGTCCTG
AGGCCTACAAGCGGCTTTTGGCGAGCTTCTACTGCAAAGGGGCGCATGGTATCATGTCACCACT
GGCCAAAAAGAAACTCCTGGCTCAGGTCAGCAAGGCAGAGGCCTTGCAGTGCCAAGAAGAGGGC
TGTCGCCACGGAGCAAGGAGCCCCAACAAGGACCTTCAAGAAAGTTCCCAGAACCCAAGAGGGC
TGGCTGAGAACTCTGAACACCAACTAACCCCCCCGGAAGGATTGCGGGCCCCTGGTGGCAGCAC
TGGTGTGGAGGCACAGGTGGGCCCCTGCCCTACAGCCCCCACATTCTTAGGCCGTTTTCATGCG
TACCCCACCGAGGTGCTGAAGCCCGTCAGCCAGCACCCCAGGGACTTCTTCTCCAGCCTTAAAG
ACAGGGTGCTGTTGGGACCACCTGGTAAAGAGGAAGGGCTGACAGCCAAAGAGTCCCAGCTGGT
ATGGGGTGGGGATGCCAACCGCCCCTCTGCATTCCACAAAGGCAGCACAAGGAAAAGAAGTTTC
TATCCCAAGCCCAAAGCCTGCTGGGTGTCCCCCATGGCCAAGGTCCCTGCTGAGAGTCCCGGAG
CCCCACTCCCCCATCCCAGGAGCCCAGGTCTTAGCAAGAAGCGCGGCTTGGAAGAAGAGGGATA
CACTCATGGTGGCAAGAAACTGAAGGCGGTGTCTCCCTTTCTGAAGGAGGTGGATGCCAGGGAG
AGTGAGGGCAAGCCTGCAGCCCCTGGCTTGGCTGTATCCTGTCTACTGGGCCCAGCCCTGGGGC
CCACTCCTCCAGAGTCCTACAGGGGCACCATGCTGCGGTGTCCTCTGAACTTCACCAGTAGTGC
AGACCCTCTGAAGGGCCAGGCCTCACTGCCCTTCAGCCCCCTGGTCATTCCTACTTTCCCAGCC
CATCTCCTGGCTACAACAGGCCCCTCGCCTATGGCTACCAGCCTGATGCATTTCCCTCCCACGC
CATATGACACTGTCCTTCGCAACAGACTGGGTCCAGCTTCGTCTGCCTGGCACGTGCCCCCCGT
CACAACCTATGCGGCACCCCACTTCTTCCACCTCAACACCAAACTGTAGGGCCTGAGTCTATCC
TGCTATGCCTCGGAGATGGGGCCTCTAATGGGCAGATGCTGCTGCGCATCTCAGGCCAGACTAG
CCTCCCCGAGTCTGACTCCCTCGCACAGACAGGAGGAGGCAGTGGGCTTGTCTGAATGAAGCAG
CCTGTGCCCAAAGCCCAGGGACCAAGTTGTGGTAAGATCATGAAAGTACCTGAGCTGGTGTTCT
CTTTCCACAGAGGCCAAGAGGTCTGAGAGGCTGGGGAGCTAAATTATCAGCTCAAGGCATCCAG
GTTGGCCACGAAAGACCCAATAAAAAGACACTGGTGTGATTGCACTCAGCCCAAGGGTATACAG
CATTGGACGTTTGCAAGGGGAGGTGAGGCAGGAGCGAGCGTGTAGGCGTGGCCATCAGTGTGGG
AGCAAAGATGAAACAAAGCCACTCTGGCCTGGACGCTGCCACCCCACTGGAGGGTAGGGCCAGA
GCCAAACCGGGCCTCTGTGCGCAGATGAACAGCCGAGATTCCTTTCGCTCCAGCCTCAGGACAC
TCGACTGTTGAGGTTGCCGTGGTGCAAAGCCCAGAGCACACTGGTGACCTGTGAGACAAGTGGG
AGGGGCTGTGTCATTGCAACCCTCTGAGCTGAGCCAGTCCCAGAAGGCCTTGAGTCTTTCAGTG
AAGGGCTTGCTCTGAGAGACCTTGCTGTGTTGCTCATGTTAATCTGGGACCCCTGACCTAAAGA
AATCCAACTATGGCCTTCTCAGTAGCAGAAGCTACAGGTGTGAACCTCTGTACCCGTGAAGAGG
GGATTTGTGGGTGTTCGTATAAAACCCAAGTGAGTCTGTCCTATTGGTGGGCAGACCTGTGAGC
CCAGCTGCCTAGTGTTCCCAGTCAGTAACCTGCCACATCCACACCTATTTTTCCTGTTCCACAT
ACTGGACTTGGGGTGAGGGGTAGAGGGAACCCATCTCTACCTGTGAATCTGTTGACAAGTCACA
GTGATATTTAACTGTGGTTGCTCCAGGCGCCCACACAGAAACCCTGTGGCTTGGCATCCACAAC
TACCTTAGATATGGCTTGCTCTGCCAGTCCCAAGGAGACAGTACAGTTTCACACCATTCCTGGA
AAGGCAGGGCCACCATGGCCCAGAGATGCTAGGATGCCAGTGAACCAAGTCAACAGATGATTAC
TGACCTACATCATGGGAACTCACCCTCTCCCTGACCCCAGGCCATGGGTAGGAGGGCAAGGTTT
TGTGGTCCCCTTAGTTCACAGGAGGCATAGCCAAGGTCAGCAACAGGAAGTGCCATTGAGGATG
TCTGACTCTGGGAAACGGTGGCCAGGAAGGCAGCTGCCTGTGGAAGGGAGCTGGGACACAGGTG
TCCTCCAGGACCAGGTAGCCAGAGGGTGGAAGTCCCACTGATGCATCTTGCAACTTCCCGCCTT
CTGTCTAGAGATACCAGGATTCCAGTCTGAGTATGCAGATTAACAGCCCTGAGCTCCTGACAAC
CCCTCTGCACCCATGCGTTAGCCCGTCTCTGAGCTTCTACAGCCCCATGAGGAAATGCCCTGGG
TGTTGGGCTGCACACTGTGGAGTCAGGACCCAGGAGAGACAGAGGGTAACTTTGTTTCTGGAGG
GATCCCCTTCATCTACAAAGTAACGCTAGTCCGAGCCTGCTCAATGATGGCATGTGGCGGACAG
CCTGGAACAGGAGATCGGTCCAAGCTTCAGGAGCAGAGCCATCTGCTGGTTCATCAGGAGAATG
CATGGCTGGGAGGGGAGGGTGTGTTGGTTTCTGGGCCGGACTCTACCTCTGCTTCAGCAAAGAC
TCTAGAAATGAATGCAAATCAGGCTTCCTGGGAAACCTAGGGATATTGCACCCATGTGCCAGTC
TCACACAATCCTCCTTCCTTCTGTGAATGAGAAAACCGAGCTCAGAGGCGACTCCAAACGCCAT
GGTGGCTGACAGCAGGTGCACACACCTTCCCGTGTTCACTTGTGTCCCTGACAGGTTACCCCAG
AGGACCCACAGGACTGCAGAGTTCTGGGCTTGTGTCCAGGGCATAACTTATTGTCAGAGTCTAC
TTCCAAATCATTTGTGACATCTGTGCTAATGGTGGGAGAAGGCAGAGGCCACCCTGGTATTTGT
GCAGACCCAACCCCTGCCCGTGATTCCAGCTCATCCCTGGAAACAGCCTAAGTGTGACGAGTTG
GCTATTCAGCAGGAAATACCTCATTTGCCTTGGGTGTAAAAGCGTGCTGCCCCTTTAACTGCCT
TAGGTGGCGTTGGTATACATTACACCGGCATCTCCCACACGAGGCAACTATCACCACCGCAGTT
ATTTGCTTGGTTTGGTTTTTCAAGACAGGGTTTCTCTATGCAGCCCTGGCTGCCCTGGAATTTA
CTCTGTAGACCAGACTGGTCTCTAATTAATAGAGACCCACCTGCCTCTGCCTCTACTTGGATTA
AAGACGTGGGCCACCATGCCCAGAGGCCACCTCAGCCAGCAACCACCAGAGTATTAAATAGAAT
GGCTGTCAATGTTCCTTGGCTACTGGAGGAACAGGGCAGCAAGCCTCTGAGGGAGTGGGGGGAG
AGAGAGACAGAGAGAGGCCAGTAGCCAGGGGGTCTGTGGGGCAGGGACAGAGGAAGCCAGAGGT
GACTCAGGCTGTATTTGGAGCCTTCTAGTCCAAGGGGCAGTTGGGCTTTTACATGAAATAAAAG
AAAGATGGGAAGAGTG

hide sequence

RefSeq Acc Id:

XM_039083561 ⟹ XP_038939489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,513 - 46,058,729 (+)	NCBI
mRatBN7.2	9	38,534,615 - 38,549,467 (+)	NCBI

RefSeq Acc Id:

XM_039083563 ⟹ XP_038939491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,531 - 46,058,729 (+)	NCBI
mRatBN7.2	9	38,534,639 - 38,549,467 (+)	NCBI

RefSeq Acc Id:

XM_039083564 ⟹ XP_038939492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,531 - 46,058,729 (+)	NCBI
mRatBN7.2	9	38,534,639 - 38,549,467 (+)	NCBI

RefSeq Acc Id:

XM_063267145 ⟹ XP_063123215

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,513 - 46,058,729 (+)	NCBI

RefSeq Acc Id:

XR_010054592

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,513 - 46,058,729 (+)	NCBI

RefSeq Acc Id:

XR_010054593

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,513 - 46,058,729 (+)	NCBI

RefSeq Acc Id:

XR_010054594

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,030,513 - 46,058,729 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030106	(Get FASTA)	NCBI Sequence Viewer
	NP_001386108	(Get FASTA)	NCBI Sequence Viewer
	XP_006244869	(Get FASTA)	NCBI Sequence Viewer
	XP_017451929	(Get FASTA)	NCBI Sequence Viewer
	XP_038939489	(Get FASTA)	NCBI Sequence Viewer
	XP_038939491	(Get FASTA)	NCBI Sequence Viewer
	XP_038939492	(Get FASTA)	NCBI Sequence Viewer
	XP_063123215	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05778	(Get FASTA)	NCBI Sequence Viewer
	EDL99282	(Get FASTA)	NCBI Sequence Viewer
	EDL99283	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060873
	ENSRNOP00000060873.3
	ENSRNOP00000071542
	ENSRNOP00000071542.2

RefSeq Acc Id:	NP_001030106 ⟸ NM_001034934
- Peptide Label:	isoform 1
- UniProtKB:	Q3KRC8 (UniProtKB/TrEMBL), F7F3Y1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKELRGDDGATEKLKKAKDSEERQADQTTSEKTKSDAPGQTQLPRQGSSRDSTEQLGPVSGSS PPFLGANSCPEAYKRLLASFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEEGCRHGARSPNKD LQESSQNPRGLAENSEHQLTPPEGLRAPGGSTGVEAQVGPCPTAPTFLGRFHAYPTEVLKPVSQ HPRDFFSSLKDRVLLGPPGKEEGLTAKESQLVWGGDANRPSAFHKGSTRKRSFYPKPKACWVSP MAKVPAESPGAPLPHPRSPGLSKKRGLEEEGYTHGGKKLKAVSPFLKEVDARESEGKPAAPGLA VSCLLGPALGPTPPESYRGTMLRCPLNFTSSADPLKGQASLPFSPLVIPTFPAHLLATTGPSPM ATSLMHFPPTPYDTVLRNRLGPASSAWHVPPVTTYAAPHFFHLNTKL hide sequence

RefSeq Acc Id:	XP_006244869 ⟸ XM_006244807
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K0Q5 (UniProtKB/TrEMBL), A0A8I6AIK6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPSAKGKAEQSEEGDLQEPPVSPKPQDEQSKSQSPIQLEDSPKAGGEQEEEQAFLVSLYKFMK ERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRH YERLVLPYVRHLKGEDDKPLPPTKPRKQYKMAKELRGDDGATEKLKKAKDSEERQADQTTSEKT KSDAPGQTQLPRQGSSRDSTEQLGPVSGSSPPFLGANSCPEAYKRLLASFYCKGAHGIMSPLAK KKLLAQVSKAEALQCQEEGCRHGARSPNKDLQESSQNPRGLAENSEHQLTPPEGLRAPGGSTGV EAQVGPCPTAPTFLGRFHAYPTEVLKPVSQHPRDFFSSLKDRVLLGPPGKEEGLTAKESQLVWG GDANRPSAFHKGSTRKRSFYPKPKACWVSPMAKVPAESPGAPLPHPRSPGLSKKRGLEEEGYTH GGKKLKAVSPFLKEVDARESEGKPAAPGLAVSCLLGPALGPTPPESYRGTMLRCPLNFTSSADP LKGQASLPFSPLVIPTFPAHLLATTGPSPMATSLMHFPPTPYDTVLRNRLGPASSAWHVPPVTT YAAPHFFHLNTKL hide sequence

RefSeq Acc Id:	XP_017451929 ⟸ XM_017596440
- Peptide Label:	isoform X5
- UniProtKB:	Q3KRC8 (UniProtKB/TrEMBL), F7F3Y1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKELRGDDGATEKLKKAKDSEERQADQTTSEKTKSDAPGQTQLPRQGSSRDSTEQLGPVSGSS PPFLGANSCPEAYKRLLASFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEEGCRHGARSPNKD LQESSQNPRGLAENSEHQLTPPEGLRAPGGSTGVEAQVGPCPTAPTFLGRFHAYPTEVLKPVSQ HPRDFFSSLKDRVLLGPPGKEEGLTAKESQLVWGGDANRPSAFHKGSTRKRSFYPKPKACWVSP MAKVPAESPGAPLPHPRSPGLSKKRGLEEEGYTHGGKKLKAVSPFLKEVDARESEGKPAAPGLA VSCLLGPALGPTPPESYRGTMLRCPLNFTSSADPLKGQASLPFSPLVIPTFPAHLLATTGPSPM ATSLMHFPPTPYDTVLRNRLGPASSAWHVPPVTTYAAPHFFHLNTKL hide sequence

Ensembl Acc Id:

ENSRNOP00000060873 ⟸ ENSRNOT00000067688

Ensembl Acc Id:

ENSRNOP00000071542 ⟸ ENSRNOT00000089673

RefSeq Acc Id:	XP_038939489 ⟸ XM_039083561
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AIK6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939491 ⟸ XM_039083563
- Peptide Label:	isoform X4
- UniProtKB:	F7F3Y1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939492 ⟸ XM_039083564
- Peptide Label:	isoform X4
- UniProtKB:	F7F3Y1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092959 ⟸ ENSRNOT00000099627

RefSeq Acc Id:	NP_001386108 ⟸ NM_001399179
- Peptide Label:	isoform 2
- UniProtKB:	A6INC7 (UniProtKB/TrEMBL), A0A8I6AIK6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123215 ⟸ XM_063267145
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AIK6 (UniProtKB/TrEMBL)

Protein Domains

ARID

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K0Q5-F1-model_v2	AlphaFold	A0A0G2K0Q5	1-590	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696606

Promoter ID:

EPDNEW_R7124

Type:

multiple initiation site

Name:

Arid5a_1

Description:

AT-rich interaction domain 5A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	42,871,941 - 42,872,001	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311041	AgrOrtholog
BioCyc Gene	G2FUF-27815	BioCyc
Ensembl Genes	ENSRNOG00000015382	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067688	ENTREZGENE
	ENSRNOT00000067688.4	UniProtKB/TrEMBL
	ENSRNOT00000089673	ENTREZGENE
	ENSRNOT00000089673.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.60	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7931985	IMAGE-MGC_LOAD
InterPro	ARID/SWI1_ChromRemod	UniProtKB/TrEMBL
	ARID_dom	UniProtKB/TrEMBL
	ARID_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:316327	UniProtKB/TrEMBL
MGC_CLONE	MGC:124686	IMAGE-MGC_LOAD
NCBI Gene	316327	ENTREZGENE
PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5A	UniProtKB/TrEMBL
	RBP-RELATED	UniProtKB/TrEMBL
Pfam	ARID	UniProtKB/TrEMBL
PhenoGen	Arid5a	PhenoGen
PROSITE	ARID	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015382	RatGTEx
SMART	ARID	UniProtKB/TrEMBL
	BRIGHT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46774	UniProtKB/TrEMBL
UniProt	A0A0G2K0Q5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AIK6	ENTREZGENE
	A6INC7	ENTREZGENE, UniProtKB/TrEMBL
	F7F3Y1	ENTREZGENE, UniProtKB/TrEMBL
	Q3KRC8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Arid5a	AT-rich interaction domain 5A	Arid5a	AT rich interactive domain 5A (Mrf1 like)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Arid5a	AT rich interactive domain 5A (Mrf1 like)	Arid5a_predicted	AT rich interactive domain 5A (Mrf1 like) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Arid5a_predicted	AT rich interactive domain 5A (Mrf1 like) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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