Zfyve21 (zinc finger FYVE-type containing 21) - Rat Genome Database

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Gene: Zfyve21 (zinc finger FYVE-type containing 21) Rattus norvegicus
Analyze
Symbol: Zfyve21
Name: zinc finger FYVE-type containing 21
RGD ID: 1311036
Description: Predicted to enable metal ion binding activity. Predicted to be located in endosome and focal adhesion. Orthologous to human ZFYVE21 (zinc finger FYVE-type containing 21); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362789; zinc finger FYVE domain-containing protein 21; zinc finger, FYVE domain containing 21
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,695,132 - 136,715,601 (+)NCBIGRCr8
mRatBN7.26130,873,979 - 130,894,618 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,873,912 - 130,894,411 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6131,047,358 - 131,067,823 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06131,344,329 - 131,364,794 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,704,029 - 130,724,484 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06136,380,968 - 136,400,810 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6136,380,990 - 136,400,810 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,388,945 - 145,408,787 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,603,711 - 136,623,531 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16136,609,943 - 136,626,505 (+)NCBI
Celera6128,427,856 - 128,447,676 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
endosome  (IEA)
focal adhesion  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zfyve21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,695,132 - 136,715,601 (+)NCBIGRCr8
mRatBN7.26130,873,979 - 130,894,618 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,873,912 - 130,894,411 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6131,047,358 - 131,067,823 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06131,344,329 - 131,364,794 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,704,029 - 130,724,484 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06136,380,968 - 136,400,810 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6136,380,990 - 136,400,810 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,388,945 - 145,408,787 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,603,711 - 136,623,531 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16136,609,943 - 136,626,505 (+)NCBI
Celera6128,427,856 - 128,447,676 (+)NCBICelera
Cytogenetic Map6q32NCBI
ZFYVE21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,715,810 - 103,733,664 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,715,730 - 103,733,668 (+)EnsemblGRCh38hg38GRCh38
GRCh3714104,182,147 - 104,200,001 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614103,251,898 - 103,269,752 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414103,251,897 - 103,269,751NCBI
Celera1484,236,401 - 84,254,256 (+)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1484,360,391 - 84,378,316 (+)NCBIHuRef
CHM1_114104,120,235 - 104,138,173 (+)NCBICHM1_1
T2T-CHM13v2.01497,951,867 - 97,969,731 (+)NCBIT2T-CHM13v2.0
Zfyve21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,780,600 - 111,794,822 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,780,604 - 111,798,626 (+)EnsemblGRCm39 Ensembl
GRCm3812111,814,166 - 111,828,388 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,814,170 - 111,832,192 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712113,052,481 - 113,066,287 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612112,262,048 - 112,276,194 (+)NCBIMGSCv36mm8
Celera12113,018,844 - 113,036,868 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.14NCBI
Zfyve21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,509,506 - 2,519,676 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555382,509,506 - 2,519,682 (+)NCBIChiLan1.0ChiLan1.0
ZFYVE21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,874,979 - 104,892,848 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114104,091,481 - 104,109,354 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01484,341,941 - 84,359,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114104,161,904 - 104,168,787 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14104,161,904 - 104,168,787 (+)Ensemblpanpan1.1panPan2
ZFYVE21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1871,451,968 - 71,462,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl871,451,999 - 71,461,938 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha870,965,098 - 70,975,370 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0871,730,727 - 71,741,005 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,730,738 - 71,741,005 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1871,419,386 - 71,429,952 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0871,459,814 - 71,470,377 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,858,469 - 71,868,979 (+)NCBIUU_Cfam_GSD_1.0
Zfyve21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086402,618,502 - 2,633,222 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366211,446,099 - 1,462,219 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366211,447,459 - 1,462,179 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFYVE21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27130,821,382 - 130,829,315 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFYVE21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,644,466 - 81,663,017 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,644,493 - 81,662,376 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605368,958,017 - 68,976,595 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfyve21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,206,218 - 1,216,508 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247341,205,742 - 1,216,398 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfyve21
55 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:123
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000063865
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat

Markers in Region
C85416  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,890,241 - 130,890,433 (+)MAPPERmRatBN7.2
Rnor_6.06136,397,221 - 136,397,412NCBIRnor6.0
Rnor_5.06145,405,198 - 145,405,389UniSTSRnor5.0
RGSC_v3.46136,619,942 - 136,620,133UniSTSRGSC3.4
Celera6128,444,087 - 128,444,278UniSTS
Cytogenetic Map6q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 57 41 19 41 2 2 74 35 34 11 2
Low 1 6 9 7 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000063865   ⟹   ENSRNOP00000059837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6130,874,009 - 130,890,616 (+)Ensembl
Rnor_6.0 Ensembl6136,380,990 - 136,400,810 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082914   ⟹   ENSRNOP00000074963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6130,873,912 - 130,890,610 (+)Ensembl
Rnor_6.0 Ensembl6136,380,995 - 136,397,228 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094351   ⟹   ENSRNOP00000092004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6130,873,912 - 130,894,411 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097439   ⟹   ENSRNOP00000090894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6130,873,912 - 130,894,411 (+)Ensembl
RefSeq Acc Id: NM_001108725   ⟹   NP_001102195
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,151 - 136,715,601 (+)NCBI
mRatBN7.26130,873,999 - 130,894,449 (+)NCBI
Rnor_6.06136,380,990 - 136,400,810 (+)NCBI
Rnor_5.06145,388,945 - 145,408,787 (+)NCBI
RGSC_v3.46136,603,711 - 136,623,531 (+)RGD
Celera6128,427,856 - 128,447,676 (+)RGD
Sequence:
RefSeq Acc Id: NM_001399738   ⟹   NP_001386667
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,151 - 136,711,240 (+)NCBI
mRatBN7.26130,873,999 - 130,890,088 (+)NCBI
RefSeq Acc Id: NM_001399739   ⟹   NP_001386668
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,151 - 136,711,403 (+)NCBI
mRatBN7.26130,873,999 - 130,890,251 (+)NCBI
RefSeq Acc Id: NM_001399740   ⟹   NP_001386669
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,151 - 136,715,601 (+)NCBI
mRatBN7.26130,873,999 - 130,894,449 (+)NCBI
RefSeq Acc Id: NR_174344
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,151 - 136,711,768 (+)NCBI
mRatBN7.26130,873,999 - 130,890,616 (+)NCBI
RefSeq Acc Id: XM_006240639   ⟹   XP_006240701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,134 - 136,711,770 (+)NCBI
mRatBN7.26130,873,980 - 130,890,618 (+)NCBI
Rnor_6.06136,380,968 - 136,397,599 (+)NCBI
Rnor_5.06145,388,945 - 145,408,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240641   ⟹   XP_006240703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,135 - 136,711,770 (+)NCBI
mRatBN7.26130,873,980 - 130,890,618 (+)NCBI
Rnor_6.06136,380,968 - 136,397,599 (+)NCBI
Rnor_5.06145,388,945 - 145,408,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594235   ⟹   XP_017449724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,134 - 136,711,770 (+)NCBI
mRatBN7.26130,873,980 - 130,890,618 (+)NCBI
Rnor_6.06136,380,968 - 136,397,599 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594236   ⟹   XP_017449725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,132 - 136,711,770 (+)NCBI
mRatBN7.26130,873,980 - 130,890,618 (+)NCBI
Rnor_6.06136,380,968 - 136,397,599 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594237   ⟹   XP_017449726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,132 - 136,715,559 (+)NCBI
mRatBN7.26130,873,979 - 130,894,618 (+)NCBI
Rnor_6.06136,380,968 - 136,400,776 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063262148   ⟹   XP_063118218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,132 - 136,715,559 (+)NCBI
RefSeq Acc Id: XM_063262149   ⟹   XP_063118219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,695,132 - 136,715,559 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001102195   ⟸   NM_001108725
- Peptide Label: isoform 2
- UniProtKB: A6KBT7 (UniProtKB/TrEMBL),   A0A8I6AFN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240701   ⟸   XM_006240639
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K9E1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240703   ⟸   XM_006240641
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K9E1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449726   ⟸   XM_017594237
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AAK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449724   ⟸   XM_017594235
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9E1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449725   ⟸   XM_017594236
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K9E1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074963   ⟸   ENSRNOT00000082914
RefSeq Acc Id: ENSRNOP00000059837   ⟸   ENSRNOT00000063865
RefSeq Acc Id: ENSRNOP00000092004   ⟸   ENSRNOT00000094351
RefSeq Acc Id: ENSRNOP00000090894   ⟸   ENSRNOT00000097439
RefSeq Acc Id: NP_001386669   ⟸   NM_001399740
- Peptide Label: isofrm 4
RefSeq Acc Id: NP_001386668   ⟸   NM_001399739
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001386667   ⟸   NM_001399738
- Peptide Label: isoform 1
- UniProtKB: D3ZVP7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063118218   ⟸   XM_063262148
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063118219   ⟸   XM_063262149
- Peptide Label: isoform X7
Protein Domains
FYVE-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVP7-F1-model_v2 AlphaFold D3ZVP7 1-234 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694851
Promoter ID:EPDNEW_R5371
Type:initiation region
Name:Zfyve21_1
Description:zinc finger FYVE-type containing 21
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06136,381,026 - 136,381,086EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311036 AgrOrtholog
BioCyc Gene G2FUF-35825 BioCyc
Ensembl Genes ENSRNOG00000012185 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000063865 ENTREZGENE
  ENSRNOT00000063865.3 UniProtKB/TrEMBL
  ENSRNOT00000082914 ENTREZGENE
  ENSRNOT00000082914.2 UniProtKB/TrEMBL
  ENSRNOT00000094351 ENTREZGENE
  ENSRNOT00000094351.1 UniProtKB/TrEMBL
  ENSRNOT00000097439.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ZFYVE21_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZFYVE21_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362789 UniProtKB/TrEMBL
NCBI Gene 362789 ENTREZGENE
PANTHER ARRESTIN DOMAIN-CONTAINING PROTEIN D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 21 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZFYVE21_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfyve21 PhenoGen
PROSITE ZF_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012185 RatGTEx
SMART FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K9E1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AAK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFN3 ENTREZGENE, UniProtKB/TrEMBL
  A6KBT7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZRQ5_RAT UniProtKB/TrEMBL
  D3ZVP7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-19 Zfyve21  zinc finger FYVE-type containing 21  Zfyve21  zinc finger, FYVE domain containing 21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfyve21  zinc finger, FYVE domain containing 21   Zfyve21_predicted  zinc finger, FYVE domain containing 21 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zfyve21_predicted  zinc finger, FYVE domain containing 21 (predicted)      Symbol and Name status set to approved 70820 APPROVED