Irf2bpl (interferon regulatory factor 2 binding protein-like) - Rat Genome Database

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Gene: Irf2bpl (interferon regulatory factor 2 binding protein-like) Rattus norvegicus
Analyze
Symbol: Irf2bpl
Name: interferon regulatory factor 2 binding protein-like
RGD ID: 1310994
Description: Predicted to enable transcription corepressor activity and ubiquitin protein ligase activity. Involved in development of secondary female sexual characteristics. Located in nucleus. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with regression, abnormal movements, loss of speech, and seizures. Orthologous to human IRF2BPL (interferon regulatory factor 2 binding protein like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Eap1; enhanced at puberty protein 1; interferon regulatory factor 2-binding protein-like; LOC314329; polyglutamine-containing protein; Pqcp; probable E3 ubiquitin-protein ligase IRF2BPL; RGD1310994; similar to polyglutamine-containing protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,258,149 - 112,262,264 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6112,258,188 - 112,263,280 (-)EnsemblGRCr8
mRatBN7.26106,527,179 - 106,531,294 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,528,053 - 106,530,401 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6106,694,339 - 106,698,457 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06106,993,200 - 106,997,318 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,362,856 - 106,366,974 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06110,901,940 - 110,904,288 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,901,940 - 110,904,288 (-)Ensemblrn6Rnor6.0
Rnor_5.06120,193,879 - 120,196,227 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46111,006,957 - 111,009,305 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6104,351,125 - 104,353,473 (-)NCBICelera
RGSC_v3.16111,010,488 - 111,012,836 (-)NCBI
Cytogenetic Map6q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear body  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IDA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Enhanced at puberty 1 (EAP1) is a new transcriptional regulator of the female neuroendocrine reproductive axis. Heger S, etal., J Clin Invest. 2007 Aug;117(8):2145-54.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19022886   PMID:22664934   PMID:29017168   PMID:29374064   PMID:30057031  


Genomics

Comparative Map Data
Irf2bpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,258,149 - 112,262,264 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6112,258,188 - 112,263,280 (-)EnsemblGRCr8
mRatBN7.26106,527,179 - 106,531,294 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,528,053 - 106,530,401 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6106,694,339 - 106,698,457 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06106,993,200 - 106,997,318 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,362,856 - 106,366,974 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06110,901,940 - 110,904,288 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,901,940 - 110,904,288 (-)Ensemblrn6Rnor6.0
Rnor_5.06120,193,879 - 120,196,227 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46111,006,957 - 111,009,305 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6104,351,125 - 104,353,473 (-)NCBICelera
RGSC_v3.16111,010,488 - 111,012,836 (-)NCBI
Cytogenetic Map6q31NCBI
IRF2BPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381477,024,543 - 77,028,708 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1477,024,543 - 77,028,708 (-)Ensemblhg38GRCh38
GRCh371477,490,886 - 77,495,051 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,560,639 - 76,564,787 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341476,560,640 - 76,564,787NCBI
Celera1457,529,452 - 57,533,597 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,658,580 - 57,662,726 (-)NCBIHuRef
CHM1_11477,429,337 - 77,433,489 (-)NCBICHM1_1
T2T-CHM13v2.01471,234,286 - 71,238,439 (-)NCBIT2T-CHM13v2.0
Irf2bpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,927,477 - 86,931,588 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1286,927,475 - 86,931,572 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381286,880,703 - 86,884,814 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,880,701 - 86,884,798 (-)Ensemblmm10GRCm38
MGSCv371288,221,653 - 88,225,764 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361287,769,804 - 87,773,914 (-)NCBIMGSCv36mm8
Celera1288,343,126 - 88,347,316 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.06NCBI
Irf2bpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955438946,044 - 949,315 (-)NCBIChiLan1.0ChiLan1.0
IRF2BPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,107,726 - 78,111,256 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,324,230 - 77,328,910 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,577,085 - 57,581,220 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11476,780,237 - 76,784,252 (-)NCBIPanPan1.1PanPan1.1panPan2
IRF2BPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1849,861,403 - 49,865,641 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha849,549,746 - 49,553,294 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0850,095,214 - 50,098,773 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1849,758,126 - 49,761,677 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0849,781,074 - 49,784,941 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,179,463 - 50,183,015 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
IRF2BPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,120,139 - 100,122,489 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.17100,119,282 - 100,123,820 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27106,150,940 - 106,155,615 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IRF2BPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,272,012 - 54,276,177 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,272,877 - 54,275,267 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605342,473,657 - 42,478,129 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Irf2bpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473424,853,376 - 24,856,593 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Irf2bpl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17100,968,720 - 100,972,384 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Irf2bpl
49 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:86
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000014645
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat

Markers in Region
RH129025  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26106,532,053 - 106,532,203 (+)MAPPERmRatBN7.2
Rnor_6.06110,905,941 - 110,906,090NCBIRnor6.0
Rnor_5.06120,197,880 - 120,198,029UniSTSRnor5.0
RGSC_v3.46111,010,958 - 111,011,107UniSTSRGSC3.4
Celera6104,355,126 - 104,355,275UniSTS
RH 3.4 Map6730.8UniSTS
Cytogenetic Map6q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000014645   ⟹   ENSRNOP00000064525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6112,258,188 - 112,263,280 (-)Ensembl
mRatBN7.2 Ensembl6106,528,053 - 106,530,401 (-)Ensembl
Rnor_6.0 Ensembl6110,901,940 - 110,904,288 (-)Ensembl
RefSeq Acc Id: NM_001012470   ⟹   NP_001012488
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86112,258,149 - 112,262,264 (-)NCBI
mRatBN7.26106,527,179 - 106,531,294 (-)NCBI
Rnor_6.06110,901,940 - 110,904,288 (-)NCBI
Rnor_5.06120,193,879 - 120,196,227 (-)NCBI
RGSC_v3.46111,006,957 - 111,009,305 (-)RGD
Celera6104,351,125 - 104,353,473 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001012488 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98759 (Get FASTA)   NCBI Sequence Viewer  
  AAW72780 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064525
GenBank Protein Q5EIC4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001012488   ⟸   NM_001012470
- UniProtKB: Q5EIC4 (UniProtKB/Swiss-Prot),   Q4G048 (UniProtKB/Swiss-Prot),   M0R567 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000064525   ⟸   ENSRNOT00000014645
Protein Domains
Interferon regulatory factor 2-binding protein 1/2-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5EIC4-F1-model_v2 AlphaFold Q5EIC4 1-783 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694749
Promoter ID:EPDNEW_R5274
Type:single initiation site
Name:Irf2bpl_1
Description:interferon regulatory factor 2 binding protein-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06110,904,312 - 110,904,372EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310994 AgrOrtholog
BioCyc Gene G2FUF-36747 BioCyc
Ensembl Genes ENSRNOG00000011026 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000014645 ENTREZGENE
Gene3D-CATH 1.10.10.1580 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7370440 IMAGE-MGC_LOAD
InterPro I2BP1/2_C3HC4-RING_sf UniProtKB/Swiss-Prot
  Interferon_reg_fac2-bd1_2_Znf UniProtKB/Swiss-Prot
KEGG Report rno:314329 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112782 IMAGE-MGC_LOAD
NCBI Gene 314329 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE IRF2BPL-RELATED UniProtKB/Swiss-Prot
  MYELIN TRANSCRIPTION FACTOR 1-RELATED UniProtKB/Swiss-Prot
Pfam IRF-2BP1_2 UniProtKB/Swiss-Prot
  IRF-2BP1_2_M UniProtKB/Swiss-Prot
  zf-C3HC4_IRF-2BP1_2 UniProtKB/Swiss-Prot
PhenoGen Irf2bpl PhenoGen
RatGTEx ENSRNOG00000011026 RatGTEx
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot
UniProt I2BPL_RAT UniProtKB/Swiss-Prot
  M0R567 ENTREZGENE, UniProtKB/TrEMBL
  Q4G048 ENTREZGENE
  Q5EIC4 ENTREZGENE
UniProt Secondary Q4G048 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Irf2bpl  interferon regulatory factor 2 binding protein-like  Pqcp  polyglutamine-containing protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-22 Pqcp  polyglutamine-containing protein  RGD1310994  similar to polyglutamine-containing protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310994  similar to polyglutamine-containing protein  RGD1310994_predicted  similar to polyglutamine-containing protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310994_predicted  similar to polyglutamine-containing protein (predicted)  LOC314329_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC314329_predicted  similar to polyglutamine-containing protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL