Snrnp27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27) - Rat Genome Database

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Gene: Snrnp27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27) Rattus norvegicus
Analyze
Symbol: Snrnp27
Name: small nuclear ribonucleoprotein U4/U6.U5 subunit 27
RGD ID: 1310925
Description: Predicted to be involved in RNA splicing; germ cell development; and mRNA processing. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 3,3',5,5'-tetrabromobisphenol A; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EST AI449063; LOC362392; putative nucleic acid binding protein RY-1; RGD1310925; Ry1; similar to putative nucleic acid binding protein RY-1; small nuclear ribonucleoprotein 27 (U4/U6.U5); small nuclear ribonucleoprotein 27kDa (U4/U6.U5); U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,681,054 - 120,691,343 (-)NCBIGRCr8
mRatBN7.24119,123,676 - 119,133,234 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,121,877 - 119,133,234 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,596,192 - 124,605,756 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,370,925 - 120,380,489 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,995,188 - 119,004,752 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,478,075 - 118,487,633 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,478,075 - 118,534,280 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04183,048,089 - 183,057,647 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,828,680 - 120,838,238 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14121,073,178 - 121,082,871 (-)NCBI
Celera4108,093,738 - 108,103,296 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25002582  


Genomics

Comparative Map Data
Snrnp27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,681,054 - 120,691,343 (-)NCBIGRCr8
mRatBN7.24119,123,676 - 119,133,234 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,121,877 - 119,133,234 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,596,192 - 124,605,756 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,370,925 - 120,380,489 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,995,188 - 119,004,752 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,478,075 - 118,487,633 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,478,075 - 118,534,280 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04183,048,089 - 183,057,647 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,828,680 - 120,838,238 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14121,073,178 - 121,082,871 (-)NCBI
Celera4108,093,738 - 108,103,296 (-)NCBICelera
Cytogenetic Map4q34NCBI
SNRNP27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38269,893,956 - 69,905,236 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl269,893,956 - 69,905,575 (+)EnsemblGRCh38hg38GRCh38
GRCh37270,121,088 - 70,132,368 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36269,974,594 - 69,985,853 (+)NCBINCBI36Build 36hg18NCBI36
Celera269,972,266 - 69,983,527 (+)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef269,857,032 - 69,868,320 (+)NCBIHuRef
CHM1_1270,050,725 - 70,062,018 (+)NCBICHM1_1
T2T-CHM13v2.0269,906,240 - 69,916,976 (+)NCBIT2T-CHM13v2.0
Snrnp27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,652,151 - 86,661,473 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl686,652,133 - 86,661,504 (-)EnsemblGRCm39 Ensembl
GRCm38686,675,169 - 86,684,491 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,675,151 - 86,684,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv37686,625,163 - 86,634,485 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36686,640,803 - 86,650,125 (-)NCBIMGSCv36mm8
Celera688,612,797 - 88,622,344 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.75NCBI
Snrnp27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542415,238,793 - 15,252,244 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542415,243,190 - 15,251,831 (-)NCBIChiLan1.0ChiLan1.0
SNRNP27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21256,505,707 - 56,517,088 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A56,510,222 - 56,521,034 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A69,936,640 - 69,947,971 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A71,054,108 - 71,065,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,054,108 - 71,065,343 (+)Ensemblpanpan1.1panPan2
SNRNP27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11068,531,541 - 68,541,233 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,531,253 - 68,541,225 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1068,421,961 - 68,431,690 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01069,552,964 - 69,562,649 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1069,552,690 - 69,562,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,272,390 - 69,282,067 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01069,535,320 - 69,545,033 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01069,832,953 - 69,842,642 (+)NCBIUU_Cfam_GSD_1.0
Snrnp27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629214,452,473 - 14,465,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649114,106,066 - 14,118,856 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649114,106,124 - 14,118,823 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRNP27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl372,556,367 - 72,565,948 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1372,556,127 - 72,566,023 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,950,669 - 75,960,564 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNRNP27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11437,217,877 - 37,228,441 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1437,218,122 - 37,228,407 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604574,769,599 - 74,787,584 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrnp27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,490,190 - 3,503,566 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247623,494,301 - 3,503,456 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snrnp27
36 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:982
Count of miRNA genes:303
Interacting mature miRNAs:398
Transcripts:ENSRNOT00000068093
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat

Markers in Region
RH131135  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24119,121,893 - 119,122,085 (+)MAPPERmRatBN7.2
Rnor_6.04118,476,293 - 118,476,484NCBIRnor6.0
Rnor_5.04183,046,307 - 183,046,498UniSTSRnor5.0
RGSC_v3.44120,826,898 - 120,827,089UniSTSRGSC3.4
Celera4108,091,956 - 108,092,147UniSTS
RH 3.4 Map4696.9UniSTS
Cytogenetic Map4q34UniSTS
AI449063  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24119,123,800 - 119,123,899 (+)MAPPERmRatBN7.2
Rnor_6.04118,478,200 - 118,478,298NCBIRnor6.0
Rnor_5.04183,048,214 - 183,048,312UniSTSRnor5.0
RGSC_v3.44120,828,805 - 120,828,903UniSTSRGSC3.4
Celera4108,093,863 - 108,093,961UniSTS
Cytogenetic Map4q34UniSTS
RH137261  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01516,739,524 - 16,739,732NCBIRnor5.0
Rnor_5.04183,048,257 - 183,048,467NCBIRnor5.0
RGSC_v3.41512,958,991 - 12,959,198UniSTSRGSC3.4
RGSC_v3.44120,828,849 - 120,829,058UniSTSRGSC3.4
Celera1511,411,476 - 11,411,683UniSTS
Celera4108,093,907 - 108,094,116UniSTS
RH 3.4 Map1594.52UniSTS
Cytogenetic Map15p16UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000024414   ⟹   ENSRNOP00000024414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4119,140,598 - 119,179,881 (-)Ensembl
Rnor_6.0 Ensembl4118,495,005 - 118,534,280 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000068093   ⟹   ENSRNOP00000060276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4119,121,877 - 119,133,234 (-)Ensembl
Rnor_6.0 Ensembl4118,478,075 - 118,487,633 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000081201   ⟹   ENSRNOP00000073273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4119,147,789 - 119,179,881 (-)Ensembl
Rnor_6.0 Ensembl4118,484,788 - 118,534,266 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104724   ⟹   ENSRNOP00000095104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4119,166,622 - 119,179,881 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110024   ⟹   ENSRNOP00000091345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4119,121,877 - 119,132,986 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118148   ⟹   ENSRNOP00000095491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4119,140,598 - 119,179,881 (-)Ensembl
RefSeq Acc Id: NM_001108636   ⟹   NP_001102106
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,681,054 - 120,690,612 (-)NCBI
mRatBN7.24119,123,676 - 119,133,234 (-)NCBI
Rnor_6.04118,478,075 - 118,487,633 (-)NCBI
Rnor_5.04183,048,089 - 183,057,647 (-)NCBI
RGSC_v3.44120,828,680 - 120,838,238 (-)RGD
Celera4108,093,738 - 108,103,296 (-)RGD
Sequence:
RefSeq Acc Id: XM_063286286   ⟹   XP_063142356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,681,117 - 120,691,343 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102106 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142356 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL91257 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060276.2
  ENSRNOP00000091345.1
  ENSRNOP00000095104.1
RefSeq Acc Id: NP_001102106   ⟸   NM_001108636
- UniProtKB: D3ZR17 (UniProtKB/TrEMBL),   D3ZBG5 (UniProtKB/TrEMBL),   A6IAY9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024414   ⟸   ENSRNOT00000024414
Ensembl Acc Id: ENSRNOP00000073273   ⟸   ENSRNOT00000081201
Ensembl Acc Id: ENSRNOP00000060276   ⟸   ENSRNOT00000068093
Ensembl Acc Id: ENSRNOP00000095491   ⟸   ENSRNOT00000118148
Ensembl Acc Id: ENSRNOP00000091345   ⟸   ENSRNOT00000110024
Ensembl Acc Id: ENSRNOP00000095104   ⟸   ENSRNOT00000104724
RefSeq Acc Id: XP_063142356   ⟸   XM_063286286
- Peptide Label: isoform X1
Protein Domains
BTB   U4/U6.U5 small nuclear ribonucleoprotein 27kDa

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693212
Promoter ID:EPDNEW_R3737
Type:initiation region
Name:Gmcl1_1
Description:germ cell-less, spermatogenesis associated 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3738  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04118,487,608 - 118,487,668EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310925 AgrOrtholog
BioCyc Gene G2FUF-43885 BioCyc
Ensembl Genes ENSRNOG00000017838 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000065135 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068093.4 UniProtKB/TrEMBL
  ENSRNOT00000104724.1 UniProtKB/TrEMBL
  ENSRNOT00000110024.1 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  DUF1777 UniProtKB/TrEMBL
  Gcl-like UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
KEGG Report rno:362392 UniProtKB/TrEMBL
NCBI Gene 362392 ENTREZGENE
PANTHER GERM CELL-LESS PROTEIN-LIKE 1 UniProtKB/TrEMBL
  PTHR23231 UniProtKB/TrEMBL
  U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN UniProtKB/TrEMBL
  U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  DUF1777 UniProtKB/TrEMBL
PhenoGen Snrnp27 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017838 RatGTEx
  ENSRNOG00000065135 RatGTEx
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
UniProt A0A8I6ADI8_RAT UniProtKB/TrEMBL
  A0A8I6AN78_RAT UniProtKB/TrEMBL
  A6IAY9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZBG5 ENTREZGENE
  D3ZR17 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D3ZBG5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Snrnp27  small nuclear ribonucleoprotein U4/U6.U5 subunit 27  Snrnp27  small nuclear ribonucleoprotein 27 (U4/U6.U5)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-04-27 Snrnp27  small nuclear ribonucleoprotein 27 (U4/U6.U5)  Snrnp27  small nuclear ribonucleoprotein 27kDa (U4/U6.U5)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 Snrnp27  small nuclear ribonucleoprotein 27kDa (U4/U6.U5)  Ry1  putative nucleic acid binding protein RY-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-27 Ry1  putative nucleic acid binding protein RY-1  RGD1310925_predicted  similar to putative nucleic acid binding protein RY-1; EST AI449063 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1310925_predicted  similar to putative nucleic acid binding protein RY-1; EST AI449063 (predicted)  LOC362392_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362392_predicted  similar to putative nucleic acid binding protein RY-1; EST AI449063 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL