Pmm1 (phosphomannomutase 1) - Rat Genome Database

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Gene: Pmm1 (phosphomannomutase 1) Rattus norvegicus
Analyze
Symbol: Pmm1
Name: phosphomannomutase 1
RGD ID: 1310897
Description: Predicted to enable phosphomannomutase activity. Predicted to be involved in mannose metabolic process and protein N-linked glycosylation. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Predicted to be located in cytoplasm and neuronal cell body. Predicted to be active in cytosol. Orthologous to human PMM1 (phosphomannomutase 1); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC300089; MGC105960; Secp53 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,346,767 - 115,357,137 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7115,346,771 - 115,357,024 (-)EnsemblGRCr8
mRatBN7.27113,466,632 - 113,477,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,466,632 - 113,477,022 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7115,229,302 - 115,239,546 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,452,796 - 117,463,040 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,422,239 - 117,432,483 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,183,504 - 123,193,874 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,183,506 - 123,193,761 (-)Ensemblrn6Rnor6.0
Rnor_5.07123,158,885 - 123,169,142 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47120,323,808 - 120,334,065 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7109,782,496 - 109,792,754 (-)NCBICelera
RGSC_v3.17120,358,039 - 120,368,295 (-)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
1H-pyrazole  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
ciglitazone  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
doxorubicin  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
indole-3-methanol  (EXP)
inulin  (ISO)
ketoconazole  (EXP)
leflunomide  (EXP,ISO)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (EXP,ISO)
rac-lactic acid  (ISO)
rimonabant  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP,ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
neuronal cell body  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16115222   PMID:16540464   PMID:20439489  


Genomics

Comparative Map Data
Pmm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,346,767 - 115,357,137 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7115,346,771 - 115,357,024 (-)EnsemblGRCr8
mRatBN7.27113,466,632 - 113,477,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,466,632 - 113,477,022 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7115,229,302 - 115,239,546 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,452,796 - 117,463,040 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,422,239 - 117,432,483 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,183,504 - 123,193,874 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,183,506 - 123,193,761 (-)Ensemblrn6Rnor6.0
Rnor_5.07123,158,885 - 123,169,142 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47120,323,808 - 120,334,065 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7109,782,496 - 109,792,754 (-)NCBICelera
RGSC_v3.17120,358,039 - 120,368,295 (-)NCBI
Cytogenetic Map7q34NCBI
PMM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,576,900 - 41,589,840 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,576,896 - 41,595,275 (-)Ensemblhg38GRCh38
GRCh372241,972,904 - 41,985,844 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,302,858 - 40,315,759 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342240,297,411 - 40,310,313NCBI
Celera2225,779,317 - 25,792,298 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2224,938,706 - 24,951,582 (-)NCBIHuRef
CHM1_12241,933,029 - 41,946,009 (-)NCBICHM1_1
T2T-CHM13v2.02242,055,771 - 42,068,712 (-)NCBIT2T-CHM13v2.0
Pmm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,835,307 - 81,845,131 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,835,309 - 81,845,131 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381581,951,106 - 81,960,930 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,951,108 - 81,960,930 (-)Ensemblmm10GRCm38
MGSCv371581,781,536 - 81,791,297 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361581,778,367 - 81,788,119 (-)NCBIMGSCv36mm8
Celera1584,073,154 - 84,082,920 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.3NCBI
Pmm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541327,090,291 - 27,097,088 (-)Ensembl
ChiLan1.0NW_00495541327,090,291 - 27,097,088 (-)NCBIChiLan1.0ChiLan1.0
PMM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,408,349 - 51,422,735 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,107,618 - 54,120,592 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,472,067 - 22,485,029 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,558,733 - 40,571,811 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,558,733 - 40,571,811 (-)EnsemblpanPan2panpan1.1
PMM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,699,476 - 23,706,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,700,387 - 23,706,547 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1023,629,920 - 23,639,439 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01024,442,035 - 24,451,570 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,442,045 - 24,451,565 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,158,621 - 24,168,390 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,480,091 - 24,489,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,654,164 - 24,663,696 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pmm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,347,295 - 7,357,622 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936492357,665 - 372,008 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936492357,732 - 368,042 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PMM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl56,964,999 - 6,975,904 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.156,964,999 - 6,975,904 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.254,336,774 - 4,347,697 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PMM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11924,115,717 - 24,128,869 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1924,118,481 - 24,128,830 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045101,285,073 - 101,296,826 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pmm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247527,039,789 - 7,047,069 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247527,039,781 - 7,047,069 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pmm1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11251,689,134 - 251,699,787 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pmm1
129 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:50
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000007164
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000007164   ⟹   ENSRNOP00000007164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7115,346,771 - 115,357,024 (-)Ensembl
mRatBN7.2 Ensembl7113,466,632 - 113,477,022 (-)Ensembl
Rnor_6.0 Ensembl7123,183,506 - 123,193,761 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113653   ⟹   ENSRNOP00000086897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7115,346,771 - 115,357,024 (-)Ensembl
mRatBN7.2 Ensembl7113,466,632 - 113,477,022 (-)Ensembl
RefSeq Acc Id: NM_001008323   ⟹   NP_001008324
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,346,767 - 115,357,024 (-)NCBI
mRatBN7.27113,466,632 - 113,476,891 (-)NCBI
Rnor_6.07123,183,504 - 123,193,761 (-)NCBI
Rnor_5.07123,158,885 - 123,169,142 (-)NCBI
RGSC_v3.47120,323,808 - 120,334,065 (-)RGD
Celera7109,782,496 - 109,792,754 (-)RGD
Sequence:
RefSeq Acc Id: XM_017594771   ⟹   XP_017450260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,346,767 - 115,357,137 (-)NCBI
mRatBN7.27113,466,632 - 113,477,004 (-)NCBI
Rnor_6.07123,183,504 - 123,193,874 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063263321   ⟹   XP_063119391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,348,387 - 115,357,102 (-)NCBI
RefSeq Acc Id: NP_001008324   ⟸   NM_001008323
- UniProtKB: Q5RK25 (UniProtKB/TrEMBL),   A6HT35 (UniProtKB/TrEMBL),   F7F8W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450260   ⟸   XM_017594771
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000007164   ⟸   ENSRNOT00000007164
Ensembl Acc Id: ENSRNOP00000086897   ⟸   ENSRNOT00000113653
RefSeq Acc Id: XP_063119391   ⟸   XM_063263321
- Peptide Label: isoform X1
- UniProtKB: A6HT37 (UniProtKB/TrEMBL),   A6HT39 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5RK25-F1-model_v2 AlphaFold Q5RK25 1-262 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695521
Promoter ID:EPDNEW_R6046
Type:initiation region
Name:Pmm1_1
Description:phosphomannomutase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07123,193,787 - 123,193,847EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310897 AgrOrtholog
BioCyc Gene G2FUF-32653 BioCyc
BioCyc Pathway PWY-5659 [GDP-mannose biosynthesis] BioCyc
BioCyc Pathway Image PWY-5659 BioCyc
Ensembl Genes ENSRNOG00000005358 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007164 ENTREZGENE
  ENSRNOT00000007164.7 UniProtKB/TrEMBL
  ENSRNOT00000113653.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1240.20 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7302298 IMAGE-MGC_LOAD
InterPro HAD-like_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD-SF_hydro_IIB UniProtKB/TrEMBL
  PMM UniProtKB/TrEMBL
  PMM_cap UniProtKB/TrEMBL
KEGG Report rno:300089 UniProtKB/TrEMBL
MGC_CLONE MGC:105960 IMAGE-MGC_LOAD
NCBI Gene 300089 ENTREZGENE
PANTHER PHOSPHOMANNOMUTASE 1 UniProtKB/TrEMBL
  PMM UniProtKB/TrEMBL
Pfam PMM UniProtKB/TrEMBL
PhenoGen Pmm1 PhenoGen
RatGTEx ENSRNOG00000005358 RatGTEx
Superfamily-SCOP HAD-like_dom UniProtKB/TrEMBL
UniProt A0A8I6A355_RAT UniProtKB/TrEMBL
  A6HT34_RAT UniProtKB/TrEMBL
  A6HT35 ENTREZGENE, UniProtKB/TrEMBL
  A6HT36_RAT UniProtKB/TrEMBL
  A6HT37 ENTREZGENE, UniProtKB/TrEMBL
  A6HT38_RAT UniProtKB/TrEMBL
  A6HT39 ENTREZGENE, UniProtKB/TrEMBL
  F7F8W6 ENTREZGENE, UniProtKB/TrEMBL
  Q5RK25 ENTREZGENE
UniProt Secondary Q5RK25 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Pmm1  phosphomannomutase 1  Pmm1_predicted  phosphomannomutase 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pmm1_predicted  phosphomannomutase 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED