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Gene: Miga2 (mitoguardin 2) Rattus norvegicus

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Symbol:

Miga2

Name:

mitoguardin 2

RGD ID:

1310887

Description:

Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in mitochondrial fusion. Predicted to act upstream of or within bone development. Predicted to be located in plasma membrane. Orthologous to human MIGA2 (mitoguardin 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Fam73b; family with sequence similarity 73, member B; hypothetical protein LOC296623; LOC296623; mitoguardin-2; RGD1310887; similar to CG12125-PA; uncharacterized protein LOC296623

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MIGA2 (mitoguardin 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Miga2 (mitoguardin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Miga2 (mitoguardin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MIGA2 (mitoguardin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MIGA2 (mitoguardin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Miga2 (mitoguardin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MIGA2 (mitoguardin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MIGA2 (mitoguardin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Miga2 (mitoguardin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Miga2 (mitoguardin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NFIL3 (nuclear factor, interleukin 3 regulated)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MIGA2 (mitoguardin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MIGA2 (mitoguardin 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Miga2 (mitoguardin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	K01D12.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Miga	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Miga	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	miga2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	miga2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	34,034,018 - 34,056,703 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	34,034,044 - 34,056,703 (+)	Ensembl				GRCr8
mRatBN7.2	3	13,636,235 - 13,658,895 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	13,636,238 - 13,658,896 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	16,707,761 - 16,730,411 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	25,292,727 - 25,315,377 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	23,538,481 - 23,561,132 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	8,928,484 - 8,951,189 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	8,928,534 - 8,951,189 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	14,281,269 - 14,303,963 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	9,408,140 - 9,430,785 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	8,402,799 - 8,425,429 (+)	NCBI		Celera
RGSC_v3.1	3	9,408,013 - 9,429,645 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

amphetamine (EXP)

Benoxacor (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

dibutyl phthalate (EXP)

dichloroacetic acid (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

FR900359 (ISO)

furan (EXP)

hydrogen cyanide (ISO)

lead diacetate (ISO)

methamphetamine (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

potassium cyanide (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

urethane (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bone development (ISO)

mitochondrial fusion (IBA,IEA,ISO)

Cellular Component

cytosol (IEA,ISO)

mitochondrial outer membrane (IEA)

mitochondrion (ISO)

plasma membrane (IEA,ISO)

Molecular Function

protein binding (ISO)

protein heterodimerization activity (IEA,ISO)

protein homodimerization activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22876197	PMID:26711011	PMID:34800366

Genomics

Comparative Map Data

Miga2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	34,034,018 - 34,056,703 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	34,034,044 - 34,056,703 (+)	Ensembl				GRCr8
mRatBN7.2	3	13,636,235 - 13,658,895 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	13,636,238 - 13,658,896 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	16,707,761 - 16,730,411 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	25,292,727 - 25,315,377 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	23,538,481 - 23,561,132 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	8,928,484 - 8,951,189 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	8,928,534 - 8,951,189 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	14,281,269 - 14,303,963 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	9,408,140 - 9,430,785 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	8,402,799 - 8,425,429 (+)	NCBI		Celera
RGSC_v3.1	3	9,408,013 - 9,429,645 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

MIGA2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	129,036,626 - 129,072,082 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	129,036,614 - 129,072,087 (+)	Ensembl			hg38	GRCh38
GRCh37	9	131,798,905 - 131,834,361 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	130,839,074 - 130,874,172 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	128,878,806 - 128,913,904	NCBI
Celera	9	102,451,566 - 102,486,648 (+)	NCBI		Celera
Cytogenetic Map	9	q34.11	NCBI
HuRef	9	101,406,579 - 101,441,661 (+)	NCBI		HuRef
CHM1_1	9	131,950,093 - 131,985,185 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	141,240,095 - 141,275,546 (+)	NCBI		T2T-CHM13v2.0

Miga2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	30,254,232 - 30,275,532 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	30,254,245 - 30,275,533 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	30,364,233 - 30,385,520 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	30,364,233 - 30,385,521 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	30,219,855 - 30,241,039 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	30,186,344 - 30,207,528 (+)	NCBI		MGSCv36	mm8
Celera	2	30,069,368 - 30,090,426 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	21.63	NCBI

Miga2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955570	1,387,013 - 1,402,996 (+)	Ensembl
ChiLan1.0	NW_004955570	1,387,006 - 1,402,996 (+)	NCBI	ChiLan1.0	ChiLan1.0

MIGA2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	10,279,682 - 10,316,702 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	10,282,029 - 10,319,049 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	100,160,068 - 100,197,095 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	128,820,773 - 128,856,977 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	128,820,773 - 128,856,977 (+)	Ensembl			panPan2	panpan1.1

MIGA2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	54,602,363 - 54,631,287 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	54,604,086 - 54,631,228 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	53,797,951 - 53,826,918 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	55,498,346 - 55,524,165 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	55,498,109 - 55,552,212 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0	9	54,596,516 - 54,625,519 (-)	NCBI		UNSW_CanFamBas_1.0

Miga2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	196,713,508 - 196,739,991 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	16,482,049 - 16,509,997 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	16,482,070 - 16,506,890 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MIGA2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	269,334,838 - 269,363,936 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	269,334,938 - 269,363,938 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	303,351,067 - 303,380,133 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MIGA2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	9,092,712 - 9,126,679 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666096	432,196 - 467,610 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Miga2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	6,028,404 - 6,045,137 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	6,028,403 - 6,045,158 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Miga2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	5,245,478 - 5,268,283 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Miga2
291 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	693
Count of miRNA genes:	274
Interacting mature miRNAs:	351
Transcripts:	ENSRNOT00000065300
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH125103

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	13,655,197 - 13,656,373 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	8,947,491 - 8,948,666	NCBI	Rnor6.0
Rnor_5.0	3	14,300,265 - 14,301,440	UniSTS	Rnor5.0
RGSC_v3.4	3	9,427,087 - 9,428,262	UniSTS	RGSC3.4
Celera	3	8,421,731 - 8,422,906	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
22	12	71	185	91	90	59	122	59	6	412	226	12	165	97	99	31	28	28

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC115341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065300 ⟹ ENSRNOP00000062428

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	34,034,044 - 34,056,703 (+)	Ensembl
mRatBN7.2 Ensembl	3	13,636,250 - 13,658,896 (+)	Ensembl
Rnor_6.0 Ensembl	3	8,928,544 - 8,951,189 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088509 ⟹ ENSRNOP00000075370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	34,034,095 - 34,056,701 (+)	Ensembl
mRatBN7.2 Ensembl	3	13,636,238 - 13,658,893 (+)	Ensembl
Rnor_6.0 Ensembl	3	8,928,534 - 8,949,947 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000165778 ⟹ ENSRNOP00000106111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	34,034,095 - 34,056,701 (+)	Ensembl

RefSeq Acc Id:

NM_001106566 ⟹ NP_001100036

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,034,044 - 34,056,703 (+)	NCBI
mRatBN7.2	3	13,636,235 - 13,658,895 (+)	NCBI
Rnor_6.0	3	8,928,544 - 8,951,189 (+)	NCBI
Rnor_5.0	3	14,281,269 - 14,303,963 (+)	NCBI
RGSC_v3.4	3	9,408,140 - 9,430,785 (+)	RGD
Celera	3	8,402,799 - 8,425,429 (+)	RGD

Sequence:

show sequence

TGCCGCCTGGAAAGGAGACGCTGCCCTTCCCCAGCGATGGGATCCCGGCTTTGTGGAATGACCT
GTTATGTGTGCCCCTGTCCTGCTGGGGAGTGGATGGTGCCCAGGACCCAGCCAGAGACCAGCTG
AAGACGTTCTCCTCGGAAGCTCTCACCCCAGGAGGTCCCGTCCCGGGTGCTGGGCCTACCATGG
CATTCCGTAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATACC
AGTGTTCCTGTACACGACTTTTGGTCAGTCTGCGTTCTCCCAACTGCGGTTGACCCCAGGCCTG
AGAAAGGTTCTTTTTGCCACGGCCCTCGGGACTGTGGCCTTGGCCCTGGCTGCCCACCAGCTGA
AAAGGCGCCGTCGGAAGAAGAAACAGGTGGGCCCCGAGATGGGAAGTGAGCAGCTGGGCACCTT
CCCCATGCCCATCCTCATGGCCCGCAAGGTCCCTTCGGTGAAGAAAGGCTGCTCCAGCCGGAGG
GTTCAGAGCCCCAGCAGCAAGAGCAACGACACTCTGAGTGGTATCTCCTCCATAGAGCCCAGCA
AGCACTCAGGCTCCTCCCACAGCCTGGCCTCGATGGTAATGGTCAATTCATCCAGCCCTACAGC
TGCGTGCTCAGGCTCATGGGAAACCAGAGGGATGGAGGAGTCTGTGCCCACCATGGATGGCAGT
GCTGAGAGCCTCTATGTGCAAGGCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAGG
CACTGAGTGTGGGTCAGAGAGGGGACGGAGGCAGCACCCCCACACCAGGTGACAGCCTCCAGAA
CCCAGACACCTCATCTGAAGCACTGTCAGAGCCAGAGTCACAACGAAGGGAGTTTGCTGAGAAG
CTGGAGTCCCTGTTGCACCGGGCCTACCATTTGCAGGAAGAGTTCGGATCCACCCTCCCCTCTG
ACAACATGCTGCTGGACCTTGAGAGGACCCTAATGCTGCCCCTGACTGAGGGCTCATTGTGTCT
GCGAGCTGATGATGAGGACAGCCTGACCTCAGAAGACTCCTTTTTCTCAGCCACTGAGCTCTTT
GAGTCCCTGCAGATCGGAGAGTACCCGCTTCCTCTCTCCAGGCCCGCTGCTGCCTACGAGGAGG
CTCTGCAGCTGGTGAAGGAGGGGAAAGTACCTTGTCGAACACTCAGGACAGAGCTGCTAGGCTG
CTACAGTGACCAAGATTTCCTGGCCAAGCTGCATTGTGTACGGCAGGCCTTTGAGGGGCTTCTA
GAAGAAAGGAACAACCAGGTGTTCTTCGGGGAGGTCGGCCGGCAGATGGTGACAGGCCTAATGA
CCAAGGCTGAGAAGAGTCCCAAGGGCTTCCTGGAGAGCTACGAGGAGATGTTGAACTACGCCCT
GCGGCCTGAGACCTGGGCTACCACCCGGTTGGAGCTGGAGGGCAGAGGGGTGGCATGCATGAGC
TTCTTCGACATCGTGTTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCAT
CTTCGGTGCTTGCTGTCCTGCGGAACCGTTGGCTGTCTGATAGCTTCAAGGAAACAGCCCTGGC
CACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTTCTGATGCACCAGATTGTGCAATAC
CTGAGGGACATGTTCGACCTGGACAACGTGCGCTACACTTCTGTGCCAGCCCTAGCAGAAGACA
TCCTACAGTTGTCCCGGCGCCGCAGCGAGATTCTGTTGGGCTACCTGGGGGCACCAGTGGCTAG
TAGCACCGGGCTGAATGGGCCACTGCCTCGAGAGAATGGGCCCCTGGATGAGCTGCAATAGTAG
GGTGCGGGCTGGAGGAGAGAGGTGGCTGGGCCTCAGTCACAAGGGTGATTGCTGGGAGAGAGAA
AGCTGCCCCTCCCTTCCTTTGGAGTGGCATCCAAGGGCCAGGGTGGCCAAGGGCCATTGCCCCT
GAGCTTGCTCCACTTCCTCATCTGGGAATCCCAACACCCAGAGGACAGATTTCCATGAAGAGGA
ACCACTAGGAGCACTGGATAGCAGCTGCCCTTGGGGTTCCCTGAGCAGTAGAGGCAGGCCAGAG
TCAGCAGCAGGGTCTGACCAAGGGCAAGCAGCAAGACAGAAAGGTGGTGGAGAATGGCTTTGAG
CATGGACCACAGAGCCCTCATCTCCTCTGCCGCTGGCGGAGGGCAAGGAGGTGATAGGTAAGGG
ATAGAGCGCACAGGGCTATGTGGTGACCGGCACAGGGTTCTGCAATAGGAGCCATGTATAGCTA
CACAATTCCCAGCACCTGGGCTTCCGGCCAGGATGAAAGCCACATCTGGGCCATCCAGAGCGGG
GCTCGCCCCATGTGTGCTCATGTCTGAGCAGGGACTCGTCCTTCACAAACCCAGGACGCTGTCC
TCATATTCCCACGCCCTGCCAAAGACTCAAGTTTCCCCACCTCTGCCACCACCAAAGAGGGAGG
AGGAGGCAGGGCTGGCCCTTCCCATGCCCTGGTGAGCCTGAAGCTCCTTCCTGGGCAGTGCTAG
ACTCCAGCTGAGGACTCCAGCCCGAGCTCACACAGGCCCATCTCCTGTGTTGCCATCTGCTGCT
CCAAAGTGAGGACCTAGGAACCATGGCAGGGTGGGCAGAGGTCACACAGCAGGGCAGTTCCTCC
CCATCACCCCACCCCACCCCACCCCCGACAAGCTGGACTCAGCACTTTGCCTTCAACTCCATGC
ACATGTGTTTTGGGGCAGCTGCCACCCAGGGTCCTGCAGCAGCCCTTGGCATTTGTCACGGAGG
CTGCAGGGGTTCTGGCGGCCTTCCTTTTGCCTGAGCTGGGAAGCTTTTATTTATTGCCTTAATA
CTTTATTTGGCTGTTCCGTCCCTCCCAGTTGTGGCATGCAGGAGAAAAGACTCCTGGTCTGCAG
TGGAGCACTGGCTCCTGGAACAAAGTTCCTCTCCCTGGAAGGGACAAGGGCTCCCTGGGGTCAG
CAGGATGCACTGAAGAGAGGGTAGCCATGGCTCTGGGTCCTCTCTGAGGCCTGCGCTCAAAAGG
GAGCAGCCCTCACGCACTGTCCTCACATTCCATTCTTTTGCACTTACCTTGAGCTGTGAATGTA
ACCTTGGGCCAAGGCCCACTCTGATTTGCTCCTGAACCATACAGCTGTGGCATTTTTATTTTGT
CCTGTTTGTGTGTCCATGCCCCACCCTCTACACTCAACCAGCAATAGAGTGTGAGAGCAAGGCC
TGTGAATCAGATAAAGGATCGAAGTGACT

hide sequence

RefSeq Acc Id:

NM_001399326 ⟹ NP_001386255

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,034,044 - 34,056,703 (+)	NCBI
mRatBN7.2	3	13,636,235 - 13,658,895 (+)	NCBI

RefSeq Acc Id:

XM_006233782 ⟹ XP_006233844

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,034,102 - 34,056,702 (+)	NCBI
mRatBN7.2	3	13,636,284 - 13,658,797 (+)	NCBI
Rnor_6.0	3	8,928,598 - 8,951,188 (+)	NCBI
Rnor_5.0	3	14,281,269 - 14,303,963 (+)	NCBI

Sequence:

show sequence

GACGGCCACTGCGCGGGCGAGCAGCGCAGCAGGGCTAGGAGCGAGGCTTGCAGAGCATGGAACC
CGGCCCTCGTAGGGGTCCGCAACCCAGCCGGTCCGTGAAAGTGTCCAAGCTTTGTGGAATGACC
TGTTATGTGTGCCCCTGTCCTGCTGGGGAGTGGATGGTGCCCAGGACCCAGCCAGAGACCAGCT
GAAGACGTTCTCCTCGGAAGCTCTCACCCCAGGAGGTCCCGTCCCGGGTGCTGGGCCTACCATG
GCATTCCGTAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATAC
CAGTGTTCCTGTACACGACTTTTGGTCAGTCTGCGTTCTCCCAACTGCGGTTGACCCCAGGCCT
GAGAAAGGTTCTTTTTGCCACGGCCCTCGGGACTGTGGCCTTGGCCCTGGCTGCCCACCAGCTG
AAAAGGCGCCGTCGGAAGAAGAAACAGGTGGGCCCCGAGATGGGAAGTGAGCAGCTGGGCACCT
TCCCCATGCCCATCCTCATGGCCCGCAAGGTCCCTTCGGTGAAGAAAGGCTGCTCCAGCCGGAG
GGTTCAGAGCCCCAGCAGCAAGAGCAACGACACTCTGAGTGGTATCTCCTCCATAGAGCCCAGC
AAGCACTCAGGCTCCTCCCACAGCCTGGCCTCGATGGTAATGGTCAATTCATCCAGCCCTACAG
CTGCGTGCTCAGGCTCATGGGAAACCAGAGGGATGGAGGAGTCTGTGCCCACCATGGATGGCAG
TGCTGAGAGCCTCTATGTGCAAGGCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAG
GCACTGAGTGTGGGTCAGAGAGGGGACGGAGGCAGCACCCCCACACCAGGTGACAGCCTCCAGA
ACCCAGACACCTCATCTGAAGCACTGTCAGAGCCAGAGTCACAACGAAGGGAGTTTGCTGAGAA
GCTGGAGTCCCTGTTGCACCGGGCCTACCATTTGCAGGAAGAGTTCGGATCCACCCTCCCCTCT
GACAACATGCTGCTGGACCTTGAGAGGACCCTAATGCTGCCCCTGACTGAGGGCTCATTGTGTC
TGCGAGCTGATGATGAGGACAGCCTGACCTCAGAAGACTCCTTTTTCTCAGCCACTGAGCTCTT
TGAGTCCCTGCAGATCGGAGAGTACCCGCTTCCTCTCTCCAGGCCCGCTGCTGCCTACGAGGAG
GCTCTGCAGCTGGTGAAGGAGGGGAAAGTACCTTGTCGAACACTCAGGACAGAGCTGCTAGGCT
GCTACAGTGACCAAGATTTCCTGGCCAAGCTGCATTGTGTACGGCAGGCCTTTGAGGGGCTTCT
AGAAGAAAGGAACAACCAGGTGTTCTTCGGGGAGGTCGGCCGGCAGATGGTGACAGGCCTAATG
ACCAAGGCTGAGAAGAGTCCCAAGGGCTTCCTGGAGAGCTACGAGGAGATGTTGAACTACGCCC
TGCGGCCTGAGACCTGGGCTACCACCCGGTTGGAGCTGGAGGGCAGAGGGGTGGCATGCATGAG
CTTCTTCGACATCGTGTTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCA
TCTTCGGTGCTTGCTGTCCTGCGGAACCGTTGGCTGTCTGATAGCTTCAAGGAAACAGCCCTGG
CCACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTTCTGATGGTGCCTGATGGCTTCAT
CTCTCATTTCTACTCCGTATCGGAGCATGTTAGCCCTGTGCTGGCCTTTGGCTTCCTCGGACCC
AAGCCCCAGCTCTCAGAAGTCTGTGCTTTCTTCAAGCACCAGATTGTGCAATACCTGAGGGACA
TGTTCGACCTGGACAACGTGCGCTACACTTCTGTGCCAGCCCTAGCAGAAGACATCCTACAGTT
GTCCCGGCGCCGCAGCGAGATTCTGTTGGGCTACCTGGGGGCACCAGTGGCTAGTAGCACCGGG
CTGAATGGGCCACTGCCTCGAGAGAATGGGCCCCTGGATGAGCTGCAATAGTAGGGTGCGGGCT
GGAGGAGAGAGGTGGCTGGGCCTCAGTCACAAGGGTGATTGCTGGGAGAGAGAAAGCTGCCCCT
CCCTTCCTTTGGAGTGGCATCCAAGGGCCAGGGTGGCCAAGGGCCATTGCCCCTGAGCTTGCTC
CACTTCCTCATCTGGGAATCCCAACACCCAGAGGACAGATTTCCATGAAGAGGAACCACTAGGA
GCACTGGATAGCAGCTGCCCTTGGGGTTCCCTGAGCAGTAGAGGCAGGCCAGAGTCAGCAGCAG
GGTCTGACCAAGGGCAAGCAGCAAGACAGAAAGGTGGTGGAGAATGGCTTTGAGCATGGACCAC
AGAGCCCTCATCTCCTCTGCCGCTGGCGGAGGGCAAGGAGGTGATAGGTAAGGGATAGAGCGCA
CAGGGCTATGTGGTGACCGGCACAGGGTTCTGCAATAGGAGCCATGTATAGCTACACAATTCCC
AGCACCTGGGCTTCCGGCCAGGATGAAAGCCACATCTGGGCCATCCAGAGCGGGGCTCGCCCCA
TGTGTGCTCATGTCTGAGCAGGGACTCGTCCTTCACAAACCCAGGACGCTGTCCTCATATTCCC
ACGCCCTGCCAAAGACTCAAGTTTCCCCACCTCTGCCACCACCAAAGAGGGAGGAGGAGGCAGG
GCTGGCCCTTCCCATGCCCTGGTGAGCCTGAAGCTCCTTCCTGGGCAGTGCTAGACTCCAGCTG
AGGACTCCAGCCCGAGCTCACACAGGCCCATCTCCTGTGTTGCCATCTGCTGCTCCAAAGTGAG
GACCTAGGAACCATGGCAGGGTGGGCAGAGGTCACACAGCAGGGCAGTTCCTCCCCATCACCCC
ACCCCACCCCACCCCCGACAAGCTGGACTCAGCACTTTGCCTTCAACTCCATGCACATGTGTTT
TGGGGCAGCTGCCACCCAGGGTCCTGCAGCAGCCCTTGGCATTTGTCACGGAGGCTGCAGGGGT
TCTGGCGGCCTTCCTTTTGCCTGAGCTGGGAAGCTTTTATTTATTGCCTTAATACTTTATTTGG
CTGTTCCGTCCCTCCCAGTTGTGGCATGCAGGAGAAAAGACTCCTGGTCTGCAGTGGAGCACTG
GCTCCTGGAACAAAGTTCCTCTCCCTGGAAGGGACAAGGGCTCCCTGGGGTCAGCAGGATGCAC
TGAAGAGAGGGTAGCCATGGCTCTGGGTCCTCTCTGAGGCCTGCGCTCAAAAGGGAGCAGCCCT
CACGCACTGTCCTCACATTCCATTCTTTTGCACTTACCTTGAGCTGTGAATGTAACCTTGGGCC
AAGGCCCACTCTGATTTGCTCCTGAACCATACAGCTGTGGCATTTTTATTTTGTCCTGTTTGTG
TGTCCATGCCCCACCCTCTACACTCAACCAGCAATAGAGTGTGAGAGCAAGGCCTGTGAATCAG
ATAAAGGATCGAAGTGAC

hide sequence

RefSeq Acc Id:

XM_063283490 ⟹ XP_063139560

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,034,018 - 34,051,789 (+)	NCBI

RefSeq Acc Id:

XR_010064604

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,034,018 - 34,052,727 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100036	(Get FASTA)	NCBI Sequence Viewer
	NP_001386255	(Get FASTA)	NCBI Sequence Viewer
	XP_006233844	(Get FASTA)	NCBI Sequence Viewer
	XP_063139560	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93315	(Get FASTA)	NCBI Sequence Viewer
	EDL93316	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062428
	ENSRNOP00000062428.1
	ENSRNOP00000075370
	ENSRNOP00000075370.1
	ENSRNOP00000106111.1

RefSeq Acc Id:	NP_001100036 ⟸ NM_001106566
- Peptide Label:	isoform 2
- UniProtKB:	D3Z899 (UniProtKB/TrEMBL), A6JTY2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAFRRTEGMSMIQALAMTVAEIPVFLYTTFGQSAFSQLRLTPGLRKVLFATALGTVALALAAHQ LKRRRRKKKQVGPEMGSEQLGTFPMPILMARKVPSVKKGCSSRRVQSPSSKSNDTLSGISSIEP SKHSGSSHSLASMVMVNSSSPTAACSGSWETRGMEESVPTMDGSAESLYVQGMELFEEALQKWE QALSVGQRGDGGSTPTPGDSLQNPDTSSEALSEPESQRREFAEKLESLLHRAYHLQEEFGSTLP SDNMLLDLERTLMLPLTEGSLCLRADDEDSLTSEDSFFSATELFESLQIGEYPLPLSRPAAAYE EALQLVKEGKVPCRTLRTELLGCYSDQDFLAKLHCVRQAFEGLLEERNNQVFFGEVGRQMVTGL MTKAEKSPKGFLESYEEMLNYALRPETWATTRLELEGRGVACMSFFDIVLDFILMDAFEDLENP PSSVLAVLRNRWLSDSFKETALATACWSVLKAKRRLLMHQIVQYLRDMFDLDNVRYTSVPALAE DILQLSRRRSEILLGYLGAPVASSTGLNGPLPRENGPLDELQ hide sequence

RefSeq Acc Id:	XP_006233844 ⟸ XM_006233782
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAE6 (UniProtKB/TrEMBL), A6JTY1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAFRRTEGMSMIQALAMTVAEIPVFLYTTFGQSAFSQLRLTPGLRKVLFATALGTVALALAAHQ LKRRRRKKKQVGPEMGSEQLGTFPMPILMARKVPSVKKGCSSRRVQSPSSKSNDTLSGISSIEP SKHSGSSHSLASMVMVNSSSPTAACSGSWETRGMEESVPTMDGSAESLYVQGMELFEEALQKWE QALSVGQRGDGGSTPTPGDSLQNPDTSSEALSEPESQRREFAEKLESLLHRAYHLQEEFGSTLP SDNMLLDLERTLMLPLTEGSLCLRADDEDSLTSEDSFFSATELFESLQIGEYPLPLSRPAAAYE EALQLVKEGKVPCRTLRTELLGCYSDQDFLAKLHCVRQAFEGLLEERNNQVFFGEVGRQMVTGL MTKAEKSPKGFLESYEEMLNYALRPETWATTRLELEGRGVACMSFFDIVLDFILMDAFEDLENP PSSVLAVLRNRWLSDSFKETALATACWSVLKAKRRLLMVPDGFISHFYSVSEHVSPVLAFGFLG PKPQLSEVCAFFKHQIVQYLRDMFDLDNVRYTSVPALAEDILQLSRRRSEILLGYLGAPVASST GLNGPLPRENGPLDELQ hide sequence

Ensembl Acc Id:

ENSRNOP00000062428 ⟸ ENSRNOT00000065300

Ensembl Acc Id:

ENSRNOP00000075370 ⟸ ENSRNOT00000088509

RefSeq Acc Id:	NP_001386255 ⟸ NM_001399326
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2KAE6 (UniProtKB/TrEMBL), A6JTY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139560 ⟸ XM_063283490
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000106111 ⟸ ENSRNOT00000165778

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2KAE6-F1-model_v2	AlphaFold	A0A0G2KAE6	1-593	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691971

Promoter ID:

EPDNEW_R2482

Type:

multiple initiation site

Name:

Miga2_1

Description:

mitoguardin 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	8,928,536 - 8,928,596	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310887	AgrOrtholog
BioCyc Gene	G2FUF-50219	BioCyc
Ensembl Genes	ENSRNOG00000017513	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065300	ENTREZGENE
	ENSRNOT00000065300.5	UniProtKB/TrEMBL
	ENSRNOT00000088509	ENTREZGENE
	ENSRNOT00000088509.3	UniProtKB/TrEMBL
	ENSRNOT00000165778.1	UniProtKB/TrEMBL
InterPro	DUF2217	UniProtKB/TrEMBL
KEGG Report	rno:296623	UniProtKB/TrEMBL
NCBI Gene	296623	ENTREZGENE
PANTHER	MITOGUARDIN 2	UniProtKB/TrEMBL
	PTHR21508	UniProtKB/TrEMBL
Pfam	DUF2217	UniProtKB/TrEMBL
PhenoGen	Miga2	PhenoGen
RatGTEx	ENSRNOG00000017513	RatGTEx
UniProt	A0A0G2KAE6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L7H1_RAT	UniProtKB/TrEMBL
	A6JTY1	ENTREZGENE, UniProtKB/TrEMBL
	A6JTY2	ENTREZGENE, UniProtKB/TrEMBL
	D3Z899	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-29	Miga2	mitoguardin 2	Fam73b	family with sequence similarity 73, member B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Fam73b	family with sequence similarity 73, member B	RGD1310887_predicted	similar to CG12125-PA (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1310887_predicted	similar to CG12125-PA (predicted)	LOC296623_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296623_predicted	similar to CG12125-PA (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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