Tagln2 (transgelin 2) - Rat Genome Database

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Gene: Tagln2 (transgelin 2) Rattus norvegicus
Analyze
Symbol: Tagln2
Name: transgelin 2
RGD ID: 1310840
Description: Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and epithelial cell differentiation. Predicted to be active in actin cytoskeleton. Orthologous to human TAGLN2 (transgelin 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC304983; transgelin-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,499,350 - 87,506,328 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1387,499,394 - 87,506,330 (+)EnsemblGRCr8
mRatBN7.21384,966,980 - 84,973,973 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,967,009 - 84,973,972 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1387,470,400 - 87,477,325 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,870,673 - 88,877,596 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01386,055,413 - 86,062,336 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,807,196 - 90,814,119 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,807,199 - 90,814,119 (-)Ensemblrn6Rnor6.0
Rnor_5.01395,407,077 - 95,414,000 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41388,505,258 - 88,512,178 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1384,576,664 - 84,583,584 (+)NCBICelera
RGSC_v3.11388,694,141 - 88,701,062 (+)NCBI
Cytogenetic Map13q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2-methylcholine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (EXP)
amphetamine  (EXP)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
bortezomib  (ISO)
buspirone  (EXP)
butan-1-ol  (ISO)
cadmium dichloride  (EXP,ISO)
calycosin  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
ciprofibrate  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
diallyl trisulfide  (ISO)
dibutyl phthalate  (EXP,ISO)
dihydroartemisinin  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
enzyme inhibitor  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fumonisin B1  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
haloperidol  (ISO)
heparin  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
nicotine  (ISO)
nimesulide  (EXP)
ochratoxin A  (ISO)
okadaic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
quercetin  (EXP)
resveratrol  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tanespimycin  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:19056867   PMID:19190083   PMID:19199708   PMID:20458337   PMID:21492153   PMID:23376485   PMID:23533145   PMID:25468996  


Genomics

Comparative Map Data
Tagln2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,499,350 - 87,506,328 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1387,499,394 - 87,506,330 (+)EnsemblGRCr8
mRatBN7.21384,966,980 - 84,973,973 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,967,009 - 84,973,972 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1387,470,400 - 87,477,325 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,870,673 - 88,877,596 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01386,055,413 - 86,062,336 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,807,196 - 90,814,119 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,807,199 - 90,814,119 (-)Ensemblrn6Rnor6.0
Rnor_5.01395,407,077 - 95,414,000 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41388,505,258 - 88,512,178 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1384,576,664 - 84,583,584 (+)NCBICelera
RGSC_v3.11388,694,141 - 88,701,062 (+)NCBI
Cytogenetic Map13q24NCBI
TAGLN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,918,111 - 159,925,507 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,918,107 - 159,925,525 (-)Ensemblhg38GRCh38
GRCh371159,887,901 - 159,895,297 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,154,527 - 158,161,908 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341156,700,975 - 156,708,357NCBI
Celera1132,956,342 - 132,963,724 (-)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1131,244,608 - 131,252,044 (-)NCBIHuRef
CHM1_11161,283,227 - 161,290,660 (-)NCBICHM1_1
T2T-CHM13v2.01159,055,181 - 159,062,575 (-)NCBIT2T-CHM13v2.0
Tagln2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,327,813 - 172,334,942 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,327,614 - 172,334,947 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381172,500,246 - 172,507,375 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,500,047 - 172,507,380 (+)Ensemblmm10GRCm38
MGSCv371174,430,377 - 174,437,506 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361174,336,939 - 174,344,055 (+)NCBIMGSCv36mm8
Celera1175,353,741 - 175,361,114 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.89NCBI
Tagln2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546811,713,515 - 11,721,870 (-)Ensembl
ChiLan1.0NW_00495546811,713,809 - 11,721,125 (-)NCBIChiLan1.0ChiLan1.0
TAGLN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,928,580 - 89,936,071 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,668,597 - 89,676,095 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,269,954 - 135,277,421 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,190,519 - 139,197,953 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,190,519 - 139,197,953 (-)EnsemblpanPan2panpan1.1
TAGLN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13822,224,223 - 22,230,292 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3822,225,133 - 22,229,766 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3822,302,122 - 22,308,156 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03822,347,244 - 22,353,299 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3822,347,277 - 22,352,817 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.03822,647,035 - 22,653,092 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,057,510 - 23,063,564 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tagln2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,057,365 - 6,064,824 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740689,595 - 699,763 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936740689,745 - 697,145 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAGLN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,566,545 - 90,574,760 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1490,566,272 - 90,574,762 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,615,640 - 98,623,934 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAGLN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1204,024,948 - 4,032,361 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl204,024,775 - 4,032,526 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660383,083,164 - 3,090,625 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tagln2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247941,331,075 - 1,338,445 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tagln2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11051,618,746 - 51,625,730 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tagln2
147 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:71
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000011208
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
RH133696  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21384,973,673 - 84,973,889 (-)MAPPERmRatBN7.2
Rnor_6.01390,807,280 - 90,807,495NCBIRnor6.0
Rnor_5.01395,413,701 - 95,413,916UniSTSRnor5.0
RGSC_v3.41388,511,882 - 88,512,097UniSTSRGSC3.4
Celera1384,583,288 - 84,583,503UniSTS
RH 3.4 Map13565.0UniSTS
Cytogenetic Map13q24UniSTS
AI103968  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21384,965,284 - 84,965,479 (-)MAPPERmRatBN7.2
Rnor_6.01390,815,690 - 90,815,884NCBIRnor6.0
Rnor_5.01395,405,312 - 95,405,506UniSTSRnor5.0
RGSC_v3.41388,503,493 - 88,503,687UniSTSRGSC3.4
Celera1384,574,899 - 84,575,093UniSTS
RH 3.4 Map13562.4UniSTS
Cytogenetic Map13q24UniSTS
AI013247  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21384,973,611 - 84,973,846 (-)MAPPERmRatBN7.2
Rnor_6.01390,807,323 - 90,807,557NCBIRnor6.0
Rnor_5.01395,413,639 - 95,413,873UniSTSRnor5.0
RGSC_v3.41388,511,820 - 88,512,054UniSTSRGSC3.4
Celera1384,583,226 - 84,583,460UniSTS
RH 3.4 Map13563.0UniSTS
Cytogenetic Map13q24UniSTS
AU049530  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21384,972,522 - 84,972,648 (-)MAPPERmRatBN7.2
Rnor_6.01390,808,521 - 90,808,646NCBIRnor6.0
Rnor_5.01395,412,550 - 95,412,675UniSTSRnor5.0
RGSC_v3.41388,510,731 - 88,510,856UniSTSRGSC3.4
Celera1384,582,137 - 84,582,262UniSTS
Cytogenetic Map13q24UniSTS
Tagln2  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81387,504,134 - 87,504,723 (+)Marker Load Pipeline
mRatBN7.21384,971,776 - 84,972,365 (-)MAPPERmRatBN7.2
Rnor_6.01390,808,804 - 90,809,392NCBIRnor6.0
Rnor_5.01395,411,804 - 95,412,392UniSTSRnor5.0
RGSC_v3.41388,509,985 - 88,510,573UniSTSRGSC3.4
Celera1384,581,391 - 84,581,979UniSTS
Cytogenetic Map13q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000011208   ⟹   ENSRNOP00000011208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1387,499,394 - 87,506,330 (+)Ensembl
mRatBN7.2 Ensembl1384,967,035 - 84,973,969 (+)Ensembl
Rnor_6.0 Ensembl1390,807,199 - 90,814,119 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102023   ⟹   ENSRNOP00000081124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1387,501,223 - 87,506,329 (+)Ensembl
mRatBN7.2 Ensembl1384,968,823 - 84,973,972 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114693   ⟹   ENSRNOP00000080418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1387,504,232 - 87,506,324 (+)Ensembl
mRatBN7.2 Ensembl1384,967,009 - 84,973,972 (+)Ensembl
RefSeq Acc Id: NM_001013127   ⟹   NP_001013145
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81387,499,408 - 87,506,328 (+)NCBI
mRatBN7.21384,967,050 - 84,973,970 (+)NCBI
Rnor_6.01390,807,199 - 90,814,119 (-)NCBI
Rnor_5.01395,407,077 - 95,414,000 (+)NCBI
RGSC_v3.41388,505,258 - 88,512,178 (+)RGD
Celera1384,576,664 - 84,583,584 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250295   ⟹   XP_006250357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81387,499,390 - 87,506,324 (+)NCBI
mRatBN7.21384,967,188 - 84,973,973 (+)NCBI
Rnor_6.01390,807,196 - 90,814,009 (-)NCBI
Rnor_5.01395,407,077 - 95,414,000 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090801   ⟹   XP_038946729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81387,499,350 - 87,506,324 (+)NCBI
mRatBN7.21384,966,980 - 84,973,973 (+)NCBI
RefSeq Acc Id: XM_063272375   ⟹   XP_063128445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81387,501,176 - 87,506,324 (+)NCBI
RefSeq Acc Id: NP_001013145   ⟸   NM_001013127
- UniProtKB: Q5XFX0 (UniProtKB/Swiss-Prot),   A6JG61 (UniProtKB/TrEMBL),   A0A8I5ZRB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250357   ⟸   XM_006250295
- Peptide Label: isoform X1
- UniProtKB: Q5XFX0 (UniProtKB/Swiss-Prot),   A6JG61 (UniProtKB/TrEMBL),   A0A8I5ZRB4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011208   ⟸   ENSRNOT00000011208
RefSeq Acc Id: XP_038946729   ⟸   XM_039090801
- Peptide Label: isoform X1
- UniProtKB: Q5XFX0 (UniProtKB/Swiss-Prot),   A6JG61 (UniProtKB/TrEMBL),   A0A8I5ZRB4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080418   ⟸   ENSRNOT00000114693
Ensembl Acc Id: ENSRNOP00000081124   ⟸   ENSRNOT00000102023
RefSeq Acc Id: XP_063128445   ⟸   XM_063272375
- Peptide Label: isoform X1
- UniProtKB: Q5XFX0 (UniProtKB/Swiss-Prot),   A6JG61 (UniProtKB/TrEMBL),   A0A8I5ZRB4 (UniProtKB/TrEMBL)
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XFX0-F1-model_v2 AlphaFold Q5XFX0 1-199 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699026
Promoter ID:EPDNEW_R9551
Type:multiple initiation site
Name:Tagln2_1
Description:transgelin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01390,814,138 - 90,814,198EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310840 AgrOrtholog
BioCyc Gene G2FUF-17311 BioCyc
Ensembl Genes ENSRNOG00000008301 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011208 ENTREZGENE
  ENSRNOT00000011208.8 UniProtKB/Swiss-Prot
  ENSRNOT00000102023 ENTREZGENE
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7300611 IMAGE-MGC_LOAD
InterPro Calponin-like UniProtKB/Swiss-Prot
  Calponin_repeat UniProtKB/Swiss-Prot
  CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  SM22_calponin UniProtKB/Swiss-Prot
KEGG Report rno:304983 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105912 IMAGE-MGC_LOAD
NCBI Gene 304983 ENTREZGENE
PANTHER CALPONIN UniProtKB/Swiss-Prot
  TRANSGELIN-2 UniProtKB/Swiss-Prot
Pfam Calponin UniProtKB/Swiss-Prot
  PF00307 UniProtKB/Swiss-Prot
PhenoGen Tagln2 PhenoGen
PRINTS SM22CALPONIN UniProtKB/Swiss-Prot
  TRANSGELIN UniProtKB/Swiss-Prot
PROSITE CALPONIN_1 UniProtKB/Swiss-Prot
  CALPONIN_2 UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008301 RatGTEx
SMART SM00033 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot
UniProt A0A8I5ZQ04_RAT UniProtKB/TrEMBL
  A0A8I5ZRB4 ENTREZGENE, UniProtKB/TrEMBL
  A6JG60_RAT UniProtKB/TrEMBL
  A6JG61 ENTREZGENE, UniProtKB/TrEMBL
  Q5XFX0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Tagln2  transgelin 2  Tagln2_predicted  transgelin 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tagln2_predicted  transgelin 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED