Tril (TLR4 interactor with leucine-rich repeats) - Rat Genome Database

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Pathways
Gene: Tril (TLR4 interactor with leucine-rich repeats) Rattus norvegicus
Analyze
Symbol: Tril
Name: TLR4 interactor with leucine-rich repeats
RGD ID: 1310827
Description: Predicted to enable lipopolysaccharide binding activity and signaling receptor activity. Predicted to be involved in regulation of cytokine production involved in immune response and toll-like receptor 4 signaling pathway. Predicted to be located in membrane. Predicted to be part of lipopolysaccharide receptor complex. Predicted to be active in plasma membrane. Orthologous to human TRIL (TLR4 interactor with leucine rich repeats); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362364; RGD1310827; similar to RIKEN cDNA 1200009O22, EST AI316813; TLR4 interactor with leucine rich repeats
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8484,252,781 - 84,257,626 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl484,239,028 - 84,260,209 (-)EnsemblGRCr8
mRatBN7.2482,922,327 - 82,927,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl482,922,328 - 82,927,172 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx488,143,247 - 88,148,092 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0483,918,647 - 83,923,492 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0482,341,689 - 82,346,533 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0483,967,695 - 83,972,540 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl483,967,696 - 83,972,540 (-)Ensemblrn6Rnor6.0
Rnor_5.04148,630,039 - 148,634,884 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4482,177,050 - 82,181,895 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera477,801,789 - 77,806,634 (-)NCBICelera
RGSC_v3.1482,463,912 - 82,466,627 (-)NCBI
Cytogenetic Map4q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19710467  


Genomics

Comparative Map Data
Tril
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8484,252,781 - 84,257,626 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl484,239,028 - 84,260,209 (-)EnsemblGRCr8
mRatBN7.2482,922,327 - 82,927,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl482,922,328 - 82,927,172 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx488,143,247 - 88,148,092 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0483,918,647 - 83,923,492 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0482,341,689 - 82,346,533 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0483,967,695 - 83,972,540 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl483,967,696 - 83,972,540 (-)Ensemblrn6Rnor6.0
Rnor_5.04148,630,039 - 148,634,884 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4482,177,050 - 82,181,895 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera477,801,789 - 77,806,634 (-)NCBICelera
RGSC_v3.1482,463,912 - 82,466,627 (-)NCBI
Cytogenetic Map4q24NCBI
TRIL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38728,953,358 - 28,958,330 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl728,953,358 - 28,958,330 (-)Ensemblhg38GRCh38
GRCh37728,992,974 - 28,997,946 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36728,959,499 - 28,964,554 (-)NCBIBuild 36Build 36hg18NCBI36
Celera728,982,554 - 28,987,608 (-)NCBICelera
Cytogenetic Map7p14.3NCBI
HuRef728,874,840 - 28,879,894 (-)NCBIHuRef
CHM1_1728,993,172 - 28,998,227 (-)NCBICHM1_1
T2T-CHM13v2.0729,090,882 - 29,095,853 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2729,043,206 - 29,048,260 (-)NCBI
Tril
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39653,792,453 - 53,797,810 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl653,792,453 - 53,797,815 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38653,815,468 - 53,820,825 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl653,815,468 - 53,820,830 (-)Ensemblmm10GRCm38
MGSCv37653,765,462 - 53,770,819 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36653,745,046 - 53,750,272 (-)NCBIMGSCv36mm8
Celera654,342,086 - 54,347,443 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map626.07NCBI
Tril
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541030,500,276 - 30,502,735 (-)Ensembl
ChiLan1.0NW_00495541030,497,953 - 30,503,444 (-)NCBIChiLan1.0ChiLan1.0
TRIL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2633,783,690 - 33,789,076 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1782,108,386 - 82,113,451 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0729,596,977 - 29,600,989 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1729,189,813 - 29,194,998 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl729,192,063 - 29,194,498 (-)EnsemblpanPan2panpan1.1
TRIL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11441,999,558 - 42,004,418 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1442,001,920 - 42,004,397 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1441,434,793 - 41,440,404 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01441,941,504 - 41,947,124 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1441,943,870 - 41,946,344 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11442,058,720 - 42,064,344 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01441,737,368 - 41,742,599 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01442,095,691 - 42,100,927 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tril
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511886,241,805 - 86,247,016 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364785,453,532 - 5,459,071 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11843,725,910 - 43,833,993 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21848,131,829 - 48,260,547 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRIL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12129,416,135 - 29,421,192 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604275,330,871 - 75,336,064 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tril
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247391,664,432 - 1,666,867 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247391,663,916 - 1,668,258 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tril
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1687,259,527 - 87,264,823 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tril
13 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:95
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000036951
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)459753119104753119Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)480212111119233320Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)471647492116647492Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)48021363484338055Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)480216705104243248Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)469036742114036742Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)457613242102613242Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)457613242102613242Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)457613242102613242Rat
2306794Ean2Experimental allergic neuritis QTL 26.4nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)48279077797183061Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)468353567113353567Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)459836842104836842Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)46104105794638356Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)464209744109209744Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45807987592690793Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463224393108224393Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46390045888813920Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat

Markers in Region
RH134022  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2482,922,380 - 82,922,562 (+)MAPPERmRatBN7.2
Rnor_6.0483,967,749 - 83,967,930NCBIRnor6.0
Rnor_5.04148,630,093 - 148,630,274UniSTSRnor5.0
RGSC_v3.4482,177,104 - 82,177,285UniSTSRGSC3.4
Celera477,801,843 - 77,802,024UniSTS
RH 3.4 Map4518.8UniSTS
Cytogenetic Map4q24UniSTS
RH143563  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2482,922,916 - 82,923,062 (+)MAPPERmRatBN7.2
Rnor_6.0483,968,285 - 83,968,430NCBIRnor6.0
Rnor_5.04148,630,629 - 148,630,774UniSTSRnor5.0
RGSC_v3.4482,177,640 - 82,177,785UniSTSRGSC3.4
Celera477,802,379 - 77,802,524UniSTS
RH 3.4 Map4518.6UniSTS
Cytogenetic Map4q24UniSTS
RH134893  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2482,923,495 - 82,923,694 (+)MAPPERmRatBN7.2
Rnor_6.0483,968,864 - 83,969,062NCBIRnor6.0
Rnor_5.04148,631,208 - 148,631,406UniSTSRnor5.0
RGSC_v3.4482,178,219 - 82,178,417UniSTSRGSC3.4
Celera477,802,958 - 77,803,156UniSTS
RH 3.4 Map4517.7UniSTS
Cytogenetic Map4q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 57 59 6 321 157 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000036951   ⟹   ENSRNOP00000037327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl484,239,028 - 84,260,209 (-)Ensembl
mRatBN7.2 Ensembl482,922,328 - 82,927,172 (-)Ensembl
Rnor_6.0 Ensembl483,967,696 - 83,972,540 (-)Ensembl
RefSeq Acc Id: NM_001034010   ⟹   NP_001029182
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8484,252,781 - 84,257,626 (-)NCBI
mRatBN7.2482,922,327 - 82,927,172 (-)NCBI
Rnor_6.0483,967,695 - 83,972,540 (-)NCBI
Rnor_5.04148,630,039 - 148,634,884 (-)NCBI
RGSC_v3.4482,177,050 - 82,181,895 (-)RGD
Celera477,801,789 - 77,806,634 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001029182 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00660 (Get FASTA)   NCBI Sequence Viewer  
  EDL88128 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037327
  ENSRNOP00000037327.1
GenBank Protein Q496Z2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001029182   ⟸   NM_001034010
- Peptide Label: precursor
- UniProtKB: Q496Z2 (UniProtKB/Swiss-Prot),   A6K0U0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000037327   ⟸   ENSRNOT00000036951
Protein Domains
LRRCT   LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q496Z2-F1-model_v2 AlphaFold Q496Z2 1-811 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693060
Promoter ID:EPDNEW_R3585
Type:single initiation site
Name:Tril_1
Description:TLR4 interactor with leucine-rich repeats
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0483,972,600 - 83,972,660EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310827 AgrOrtholog
BioCyc Gene G2FUF-44781 BioCyc
Ensembl Genes ENSRNOG00000026941 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000036951 ENTREZGENE
  ENSRNOT00000036951.3 UniProtKB/Swiss-Prot
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7935751 IMAGE-MGC_LOAD
InterPro Dev_Immune_Receptor UniProtKB/Swiss-Prot
  FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Leu-rich_rpt UniProtKB/Swiss-Prot
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:362364 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124837 IMAGE-MGC_LOAD
NCBI Gene 362364 ENTREZGENE
PANTHER SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN UniProtKB/Swiss-Prot
  TLR4 INTERACTOR WITH LEUCINE RICH REPEATS UniProtKB/Swiss-Prot
Pfam LRR_8 UniProtKB/Swiss-Prot
PhenoGen Tril PhenoGen
PROSITE LRR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000026941 RatGTEx
SMART LRR_TYP UniProtKB/Swiss-Prot
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot
  SSF49265 UniProtKB/Swiss-Prot
UniProt A6K0U0 ENTREZGENE, UniProtKB/TrEMBL
  Q496Z2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-12-10 Tril  TLR4 interactor with leucine-rich repeats  RGD1310827  similar to RIKEN cDNA 1200009O22; EST AI316813  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310827  similar to RIKEN cDNA 1200009O22; EST AI316813  RGD1310827_predicted  similar to RIKEN cDNA 1200009O22; EST AI316813 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310827_predicted  similar to RIKEN cDNA 1200009O22; EST AI316813 (predicted)  LOC362364_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362364_predicted  similar to RIKEN cDNA 1200009O22; EST AI316813 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL